Exosc7 (exosome component 7) - Rat Genome Database

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Gene: Exosc7 (exosome component 7) Chinchilla lanigera
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Symbol: Exosc7
Name: exosome component 7
RGD ID: 9036056
Description: ENCODES a protein that exhibits RNA exonuclease activity (ortholog); INVOLVED IN RNA catabolic process (ortholog); RNA processing (ortholog); FOUND IN cytosol (ortholog); exosome (RNase complex) (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: exosome complex component RRP42
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542026,677,692 - 26,697,977 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542026,677,692 - 26,697,977 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Exosc7ChinchillaRNA catabolic process involved_inISOEXOSC7 (Homo sapiens)9068941 PMID:17174896 and PMID:20531386ComplexPortalPMID:17174896 and PMID:20531386
Exosc7ChinchillaRNA processing involved_inISOEXOSC7 (Homo sapiens)9068941 PMID:17174896 and PMID:20531386ComplexPortalPMID:17174896 and PMID:20531386

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Exosc7Chinchillacytosol located_inISOEXOSC7 (Homo sapiens)9068941 PMID:20531386ComplexPortalPMID:20531386
Exosc7Chinchillaexosome (RNase complex) part_ofISOEXOSC7 (Homo sapiens)9068941 PMID:20531389UniProtPMID:20531389
Exosc7Chinchillanucleolus located_inISOEXOSC7 (Homo sapiens)9068941 PMID:20531386ComplexPortalPMID:20531386
Exosc7Chinchillanucleus located_inISOEXOSC7 (Homo sapiens)9068941 PMID:20531386ComplexPortalPMID:20531386


#
Reference Title
Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
PMID:30032202  



Exosc7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542026,677,692 - 26,697,977 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542026,677,692 - 26,697,977 (-)NCBIChiLan1.0ChiLan1.0
EXOSC7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38344,976,244 - 45,012,668 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl344,975,241 - 45,036,066 (+)EnsemblGRCh38hg38GRCh38
GRCh37345,017,736 - 45,054,160 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36344,992,768 - 45,027,966 (+)NCBINCBI36Build 36hg18NCBI36
Build 34344,992,767 - 45,027,966NCBI
Celera344,955,701 - 44,992,110 (+)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef345,061,602 - 45,098,020 (+)NCBIHuRef
CHM1_1344,967,719 - 45,004,138 (+)NCBICHM1_1
T2T-CHM13v2.0344,991,986 - 45,028,405 (+)NCBIT2T-CHM13v2.0
Exosc7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399122,942,310 - 122,965,194 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9122,942,280 - 122,965,194 (+)EnsemblGRCm39 Ensembl
GRCm389123,113,231 - 123,136,129 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9123,113,215 - 123,136,129 (+)EnsemblGRCm38mm10GRCm38
MGSCv379123,022,349 - 123,045,247 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369122,961,929 - 122,984,827 (+)NCBIMGSCv36mm8
Celera9123,564,456 - 123,587,272 (+)NCBICelera
Cytogenetic Map9F4NCBI
cM Map973.8NCBI
Exosc7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88131,650,988 - 131,676,399 (+)NCBIGRCr8
mRatBN7.28122,773,607 - 122,798,943 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8122,773,591 - 122,799,270 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8128,363,870 - 128,389,237 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08126,562,810 - 126,588,177 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08124,391,031 - 124,416,392 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08132,204,628 - 132,229,968 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8132,204,604 - 132,229,969 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08131,357,736 - 131,383,562 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48127,868,051 - 127,893,391 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18127,887,772 - 127,913,121 (+)NCBI
Celera8121,886,626 - 121,911,947 (+)NCBICelera
Cytogenetic Map8q32NCBI
EXOSC7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2244,934,529 - 44,970,666 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1344,939,295 - 44,975,432 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0344,877,339 - 44,913,510 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1345,932,301 - 46,024,604 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl345,932,343 - 46,023,269 (+)Ensemblpanpan1.1panPan2
EXOSC7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12043,343,573 - 43,379,614 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2043,343,573 - 43,379,574 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2043,259,496 - 43,295,233 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02043,828,607 - 43,864,544 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2043,828,607 - 43,864,501 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12043,067,480 - 43,102,991 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02043,475,191 - 43,510,686 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02043,751,254 - 43,787,207 (-)NCBIUU_Cfam_GSD_1.0
Exosc7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118198,398,078 - 198,424,459 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936695750,640 - 777,113 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936695748,645 - 776,767 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EXOSC7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1328,176,793 - 28,208,975 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11328,176,806 - 28,206,435 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21331,054,779 - 31,084,088 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EXOSC7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1226,452,155 - 6,485,411 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl226,452,195 - 6,485,276 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041160,683,880 - 160,717,155 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Exosc7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473075,541,568 - 75,561,767 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473075,541,677 - 75,561,826 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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RefSeq Transcripts XM_005383478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01021427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBCQ01041300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCLAT00000022220   ⟹   ENSCLAP00000022016
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542026,677,692 - 26,697,977 (-)Ensembl
RefSeq Acc Id: XM_005383478   ⟹   XP_005383535
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542026,677,692 - 26,697,977 (-)NCBI
Sequence:
Protein RefSeqs XP_005383535 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000022016
  ENSCLAP00000022016.1
RefSeq Acc Id: XP_005383535   ⟸   XM_005383478
- UniProtKB: A0A8C2W4Z7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000022016   ⟸   ENSCLAT00000022220


1 to 18 of 18 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCLAG00000015083 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000022220 ENTREZGENE
  ENSCLAT00000022220.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.230.70 UniProtKB/TrEMBL
InterPro ExoRNase_PH_dom1 UniProtKB/TrEMBL
  ExoRNase_PH_dom2 UniProtKB/TrEMBL
  ExoRNase_PH_dom2_sf UniProtKB/TrEMBL
  Exosome_comp_Rrp42_subfam UniProtKB/TrEMBL
  PNPase/RNase_PH_dom_sf UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold UniProtKB/TrEMBL
NCBI Gene LOC102010166 ENTREZGENE
PANTHER EXOSOME COMPLEX COMPONENT RRP42 UniProtKB/TrEMBL
  EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN UniProtKB/TrEMBL
Pfam RNase_PH UniProtKB/TrEMBL
  RNase_PH_C UniProtKB/TrEMBL
Superfamily-SCOP SSF54211 UniProtKB/TrEMBL
  SSF55666 UniProtKB/TrEMBL
UniProt A0A8C2W4Z7 ENTREZGENE, UniProtKB/TrEMBL
1 to 18 of 18 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Exosc7  exosome component 7  LOC102010166  exosome complex exonuclease RRP42-like  Symbol and/or name change 5135510 APPROVED