LOC102021406 (histone H2A) - Rat Genome Database

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Gene: LOC102021406 (histone H2A) Chinchilla lanigera
Analyze
Symbol: LOC102021406
Name: histone H2A
RGD ID: 8814636
Description: INVOLVED IN mRNA processing (ortholog); nucleosome assembly (ortholog); ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN euchromatin (ortholog); nucleosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955593911,641 - 911,919 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
euchromatin  (ISO)
nucleosome  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC102021406
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955593911,641 - 911,919 (+)NCBIChiLan1.0ChiLan1.0
H2AB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X154,884,972 - 154,885,558 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX154,884,972 - 154,885,558 (+)EnsemblGRCh38hg38GRCh38
GRCh37X154,113,247 - 154,113,833 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X153,766,511 - 153,767,027 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX154,271,936 - 154,272,452 (+)NCBICelera
Cytogenetic MapXq28NCBI
HuRefX142,656,817 - 142,657,333 (+)NCBIHuRef
CHM1_1X154,025,079 - 154,025,595 (+)NCBICHM1_1
T2T-CHM13v2.0X153,121,380 - 153,121,966 (+)NCBIT2T-CHM13v2.0
H2ab1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X115,924,454 - 115,924,801 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX115,924,454 - 115,924,801 (+)EnsemblGRCm39 Ensembl
GRCm38X117,014,757 - 117,015,104 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX117,014,757 - 117,015,104 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X114,128,366 - 114,128,713 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X114,128,240 - 114,128,713 (+)NCBIMGSCv36mm8
CeleraX103,753,527 - 103,753,874 (+)NCBICelera
Cytogenetic MapXE1NCBI
cM MapX49.58NCBI
H2ab3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X86,566,994 - 86,567,568 (+)NCBIGRCr8
mRatBN7.2X82,362,531 - 82,363,105 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX82,362,633 - 82,362,983 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX84,053,296 - 84,053,646 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X87,474,676 - 87,475,026 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X85,034,596 - 85,034,946 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X88,602,135 - 88,602,485 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX88,602,135 - 88,602,485 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X88,525,854 - 88,526,204 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X105,959,002 - 105,959,352 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX83,583,749 - 83,584,099 (+)NCBICelera
Cytogenetic MapXq31NCBI
LOC100992822
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X154,863,587 - 154,864,290 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X154,867,195 - 154,867,890 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X144,364,612 - 144,365,333 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X154,205,452 - 154,206,043 (+)NCBIpanpan1.1PanPan1.1panPan2
H2AB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X122,910,412 - 122,913,373 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX122,910,968 - 122,913,382 (+)NCBICanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0X126,038,484 - 126,041,082 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X121,785,189 - 121,788,817 (+)NCBIUMICH_Zoey_3.1
LOC101967165
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X119,873,257 - 119,874,388 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936927232,353 - 232,857 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
H2AB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1X125,277,575 - 125,280,752 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X143,203,035 - 143,205,593 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103232850
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X129,130,005 - 129,131,069 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606567,106,492 - 67,107,273 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_005414637   ⟹   XP_005414694
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955593911,641 - 911,919 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005414694 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005414694   ⟸   XM_005414637
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene LOC102021406 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 LOC102021406  histone H2A    histone H2A-Bbd type 1-like  Symbol and/or name change 5135510 APPROVED