Rbfox2 (RNA binding fox-1 homolog 2) - Rat Genome Database

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Gene: Rbfox2 (RNA binding fox-1 homolog 2) Chinchilla lanigera
Analyze
Symbol: Rbfox2
Name: RNA binding fox-1 homolog 2
RGD ID: 8793884
Description: ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); mRNA binding (ortholog); RNA binding (ortholog); INVOLVED IN alternative mRNA splicing, via spliceosome (ortholog); cardiac conduction (ortholog); dendrite morphogenesis (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); genetic disease (ortholog); Salivary Gland Neoplasms (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RNA binding protein fox-1 homolog 2; RNA binding protein, fox-1 homolog (C. elegans) 2; RNA binding protein, fox-1 homolog 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541322,035,837 - 22,287,763 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541322,034,048 - 22,288,430 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Rbfox2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541322,035,837 - 22,287,763 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541322,034,048 - 22,288,430 (-)NCBIChiLan1.0ChiLan1.0
RBFOX2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382235,738,736 - 36,028,824 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2235,738,736 - 36,028,824 (-)EnsemblGRCh38hg38GRCh38
GRCh372236,134,783 - 36,424,872 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362234,464,729 - 34,754,531 (-)NCBINCBI36hg18NCBI36
Build 342234,464,148 - 34,560,928NCBI
Celera2219,937,385 - 20,227,179 (-)NCBI
Cytogenetic Map22q12.3NCBI
HuRef2219,102,245 - 19,391,883 (-)NCBIHuRef
CHM1_12236,093,705 - 36,383,622 (-)NCBICHM1_1
T2T-CHM13v2.02236,198,484 - 36,488,569 (-)NCBI
Rbfox2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391576,963,190 - 77,193,058 (-)NCBIGRCm39mm39
GRCm39 Ensembl1576,963,190 - 77,191,204 (-)Ensembl
GRCm381577,078,990 - 77,308,434 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1577,078,990 - 77,307,004 (-)EnsemblGRCm38mm10GRCm38
MGSCv371576,909,420 - 77,137,483 (-)NCBIGRCm37mm9NCBIm37
MGSCv361576,909,594 - 77,134,183 (-)NCBImm8
Celera1578,567,062 - 78,795,167 (-)NCBICelera
Cytogenetic Map15D3NCBI
Rbfox2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27108,810,627 - 109,054,420 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl7108,810,628 - 109,054,691 (-)Ensembl
Rnor_6.07118,157,093 - 118,396,733 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7118,156,946 - 118,396,728 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07118,149,473 - 118,388,515 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47115,143,721 - 115,384,534 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17115,176,300 - 115,250,419 (-)NCBI
Celera7105,163,071 - 105,401,893 (-)NCBICelera
Cytogenetic Map7q34NCBI
RBFOX2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12234,580,587 - 34,870,251 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2234,586,044 - 34,870,257 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02216,740,707 - 17,031,415 (-)NCBIMhudiblu_PPA_v0panPan3
RBFOX2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11028,284,836 - 28,494,618 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1028,192,683 - 28,489,114 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1028,161,477 - 28,434,719 (+)NCBI
ROS_Cfam_1.01029,006,984 - 29,281,227 (+)NCBI
ROS_Cfam_1.0 Ensembl1029,006,281 - 29,281,225 (+)Ensembl
UMICH_Zoey_3.11028,733,191 - 29,007,048 (+)NCBI
UNSW_CanFamBas_1.01029,042,160 - 29,315,956 (+)NCBI
UU_Cfam_GSD_1.01029,220,620 - 29,496,217 (+)NCBI
Rbfox2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494511,613,596 - 11,816,299 (+)NCBI
SpeTri2.0NW_0049364924,624,013 - 4,826,715 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBFOX2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl511,633,541 - 11,903,094 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1511,633,523 - 11,905,325 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.259,682,598 - 9,774,702 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBFOX2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11918,507,184 - 18,801,535 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666045107,097,992 - 107,393,837 (+)NCBIVero_WHO_p1.0
Rbfox2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475211,765,679 - 12,022,320 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462475211,766,033 - 12,027,804 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005379131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005379139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005379140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005379141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013511499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013511500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013511501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013511502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013511503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013511504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013511505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01014279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01014280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01014281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01014282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01014283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01014284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01014285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01014286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01014287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01014288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBBH01172118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDJ01174673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCLAT00000025161   ⟹   ENSCLAP00000024919
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541322,035,837 - 22,287,763 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000025162   ⟹   ENSCLAP00000024920
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541322,035,837 - 22,287,763 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000025163   ⟹   ENSCLAP00000024921
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541322,035,847 - 22,171,987 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000025164   ⟹   ENSCLAP00000024922
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541322,035,847 - 22,123,455 (-)Ensembl
RefSeq Acc Id: XM_005379131   ⟹   XP_005379188
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541322,034,048 - 22,288,430 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005379139   ⟹   XP_005379196
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541322,034,048 - 22,288,430 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005379140   ⟹   XP_005379197
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541322,034,048 - 22,288,430 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005379141   ⟹   XP_005379198
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541322,034,048 - 22,288,430 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511499   ⟹   XP_013366953
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541322,034,048 - 22,288,430 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511500   ⟹   XP_013366954
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541322,034,048 - 22,288,430 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511501   ⟹   XP_013366955
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541322,034,048 - 22,288,430 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511502   ⟹   XP_013366956
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541322,034,048 - 22,288,430 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511503   ⟹   XP_013366957
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541322,034,048 - 22,288,430 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511504   ⟹   XP_013366958
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541322,034,048 - 22,288,430 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511505   ⟹   XP_013366959
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541322,038,241 - 22,288,430 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005379196   ⟸   XM_005379139
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005379188   ⟸   XM_005379131
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_005379197   ⟸   XM_005379140
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_005379198   ⟸   XM_005379141
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_013366956   ⟸   XM_013511502
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_013366957   ⟸   XM_013511503
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_013366954   ⟸   XM_013511500
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013366958   ⟸   XM_013511504
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_013366955   ⟸   XM_013511501
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013366953   ⟸   XM_013511499
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013366959   ⟸   XM_013511505
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: ENSCLAP00000024919   ⟸   ENSCLAT00000025161
RefSeq Acc Id: ENSCLAP00000024922   ⟸   ENSCLAT00000025164
RefSeq Acc Id: ENSCLAP00000024921   ⟸   ENSCLAT00000025163
RefSeq Acc Id: ENSCLAP00000024920   ⟸   ENSCLAT00000025162
Protein Domains
RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000017106 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000024919 ENTREZGENE
  ENSCLAP00000024919.1 UniProtKB/TrEMBL
  ENSCLAP00000024920.1 UniProtKB/TrEMBL
  ENSCLAP00000024921 ENTREZGENE
  ENSCLAP00000024921.1 UniProtKB/TrEMBL
  ENSCLAP00000024922.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000025161 ENTREZGENE
  ENSCLAT00000025161.1 UniProtKB/TrEMBL
  ENSCLAT00000025162.1 UniProtKB/TrEMBL
  ENSCLAT00000025163 ENTREZGENE
  ENSCLAT00000025163.1 UniProtKB/TrEMBL
  ENSCLAT00000025164.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Fox-1_C_dom UniProtKB/TrEMBL
  FOX1_RRM UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RNA-bd_Fox-1 UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
NCBI Gene Rbfox2 ENTREZGENE
Pfam Fox-1_C UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
PIRSF Ataxin_2_bd_A2BP UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A8C2W454_CHILA UniProtKB/TrEMBL
  A0A8C2WCG4_CHILA UniProtKB/TrEMBL
  A0A8C2YUT5_CHILA UniProtKB/TrEMBL
  A0A8C2YUU2_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-09-26 Rbfox2  RNA binding fox-1 homolog 2    RNA binding protein, fox-1 homolog 2  Symbol and/or name change 5135510 APPROVED
2016-08-03 Rbfox2  RNA binding protein, fox-1 homolog 2    RNA binding protein, fox-1 homolog (C. elegans) 2  Symbol and/or name change 5135510 APPROVED