Rbfox2 (RNA binding protein, fox-1 homolog (C. elegans) 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Rbfox2 (RNA binding protein, fox-1 homolog (C. elegans) 2) Mus musculus
Analyze
Symbol: Rbfox2
Name: RNA binding protein, fox-1 homolog (C. elegans) 2
RGD ID: 1323506
MGI Page MGI
Description: Enables mRNA binding activity. Involved in regulation of alternative mRNA splicing, via spliceosome and regulation of definitive erythrocyte differentiation. Acts upstream of or within dendrite morphogenesis; neuromuscular process controlling balance; and radial glia guided migration of Purkinje cell. Located in nucleus. Is expressed in several structures, including blastocyst; brain; dorsal root ganglion; early embryo; and limb. Human ortholog(s) of this gene implicated in congenital heart disease. Orthologous to human RBFOX2 (RNA binding fox-1 homolog 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2810460A15Rik; AA407676; AI118529; Fbm2; fox-1 homolog B; fox-1 homolog Fxh; Fxh; Fyn-binding molecule 2; hexaribonucleotide binding protein 2; hexaribonucleotide-binding protein 2; Hrnbp2; Rbm; Rbm9; RNA binding motif protein 9; RNA binding protein fox-1 homolog 2; RNA-binding motif protein 9; RNA-binding protein 9
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391576,963,190 - 77,193,058 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1576,963,190 - 77,191,204 (-)EnsemblGRCm39 Ensembl
GRCm381577,078,990 - 77,308,434 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1577,078,990 - 77,307,004 (-)EnsemblGRCm38mm10GRCm38
MGSCv371576,909,420 - 77,137,483 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361576,909,594 - 77,134,183 (-)NCBIMGSCv36mm8
Celera1578,567,062 - 78,795,167 (-)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1536.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IEA,ISO)
nucleoplasm  (ISO)
nucleus  (IBA,IDA,ISO,ISS)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal axial skeleton morphology  (IAGP)
abnormal craniofacial bone morphology  (IAGP)
abnormal craniofacial morphology  (IAGP)
abnormal frontal bone morphology  (IAGP)
abnormal hypoglossal nerve morphology  (IAGP)
abnormal locomotor activation  (IAGP)
abnormal nasal bone morphology  (IAGP)
abnormal neurocranium morphology  (IAGP)
abnormal neuron physiology  (IAGP)
abnormal oculomotor nerve morphology  (IAGP)
abnormal palatal mesenchymal cell proliferation  (IAGP)
abnormal posture  (IAGP)
abnormal Purkinje cell migration  (IAGP)
abnormal rostral-caudal body axis extension  (IAGP)
abnormal spine curvature  (IAGP)
abnormal trochlear nerve morphology  (IAGP)
absent palatine bone horizontal plate  (IAGP)
ataxia  (IAGP)
atelectasis  (IAGP)
cleft secondary palate  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased bone ossification  (IAGP)
decreased cerebellar granule cell precursor proliferation  (IAGP)
ectopic bone  (IAGP)
ectopic Purkinje cell  (IAGP)
frontal bone hypoplasia  (IAGP)
fusion of vertebral bodies  (IAGP)
hydrocephaly  (IAGP)
impaired coordination  (IAGP)
increased neuron apoptosis  (IAGP)
increased Purkinje cell number  (IAGP)
lethality, incomplete penetrance  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
palatal shelves fail to meet at midline  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
respiratory distress  (IAGP)
respiratory failure  (IAGP)
small cerebellum  (IAGP)
small mandible  (IAGP)
small thoracic cavity  (IAGP)
subcutaneous edema  (IAGP)
thin cerebellar molecular layer  (IAGP)
thin dermal layer  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. De novo mutations in congenital heart disease with neurodevelopmental and other congenital anomalies. Homsy J, etal., Science. 2015 Dec 4;350(6265):1262-6. doi: 10.1126/science.aac9396.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Alternative splicing analysis in human monocytes and macrophages reveals MBNL1 as major regulator. Liu H, etal., Nucleic Acids Res. 2018 Jul 6;46(12):6069-6086. doi: 10.1093/nar/gky401.
4. Loss of RNA expression and allele-specific expression associated with congenital heart disease. McKean DM, etal., Nat Commun. 2016 Sep 27;7:12824. doi: 10.1038/ncomms12824.
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. Aberrant Expression of a Non-muscle RBFOX2 Isoform Triggers Cardiac Conduction Defects in Myotonic Dystrophy. Misra C, etal., Dev Cell. 2020 Mar 23;52(6):748-763.e6. doi: 10.1016/j.devcel.2020.01.037. Epub 2020 Feb 27.
7. Dysregulation of RBFOX2 Is an Early Event in Cardiac Pathogenesis of Diabetes. Nutter CA, etal., Cell Rep. 2016 Jun 7;15(10):2200-2213. doi: 10.1016/j.celrep.2016.05.002. Epub 2016 May 26.
8. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Reactivation of fetal splicing programs in diabetic hearts is mediated by protein kinase C signaling. Verma SK, etal., J Biol Chem. 2013 Dec 6;288(49):35372-86. doi: 10.1074/jbc.M113.507426. Epub 2013 Oct 22.
13. Rbfox2 function in RNA metabolism is impaired in hypoplastic left heart syndrome patient hearts. Verma SK, etal., Sci Rep. 2016 Aug 3;6:30896. doi: 10.1038/srep30896.
14. Repression of the Central Splicing Regulator RBFox2 Is Functionally Linked to Pressure Overload-Induced Heart Failure. Wei C, etal., Cell Rep. 2015 Mar 10;10(9):1521-1533. doi: 10.1016/j.celrep.2015.02.013. Epub 2015 Mar 5.
15. Aberrant Splicing Induced by Dysregulated Rbfox2 Produces Enhanced Function of CaV1.2 Calcium Channel and Vascular Myogenic Tone in Hypertension. Zhou Y, etal., Hypertension. 2017 Dec;70(6):1183-1192. doi: 10.1161/HYPERTENSIONAHA.117.09301. Epub 2017 Oct 9.
Additional References at PubMed
PMID:8889548   PMID:9185665   PMID:9811942   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11326268   PMID:11401487   PMID:12477932   PMID:12520002   PMID:12574126  
PMID:14610273   PMID:15824060   PMID:16141072   PMID:16141073   PMID:16260614   PMID:17101796   PMID:17715393   PMID:17967808   PMID:18381283   PMID:18799693   PMID:19075228   PMID:19564422  
PMID:19799774   PMID:20059953   PMID:20211142   PMID:21177649   PMID:21267068   PMID:21623373   PMID:21677750   PMID:21714144   PMID:21747913   PMID:21873635   PMID:22044765   PMID:22357600  
PMID:23100420   PMID:23435423   PMID:23892456   PMID:24500610   PMID:24637117   PMID:25087874   PMID:25609712   PMID:25737280   PMID:26142281   PMID:27211866   PMID:27859055   PMID:28378742  
PMID:29055695   PMID:29067356   PMID:29293084   PMID:29398366   PMID:29592913   PMID:29875359   PMID:29972780   PMID:30001398   PMID:30135482   PMID:30867288   PMID:31077711   PMID:31138677  
PMID:31241461   PMID:31778749   PMID:32325033   PMID:32807990   PMID:33184471   PMID:34321999   PMID:34363260   PMID:35137168   PMID:36536133   PMID:36674797   PMID:38007492  


Genomics

Comparative Map Data
Rbfox2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391576,963,190 - 77,193,058 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1576,963,190 - 77,191,204 (-)EnsemblGRCm39 Ensembl
GRCm381577,078,990 - 77,308,434 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1577,078,990 - 77,307,004 (-)EnsemblGRCm38mm10GRCm38
MGSCv371576,909,420 - 77,137,483 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361576,909,594 - 77,134,183 (-)NCBIMGSCv36mm8
Celera1578,567,062 - 78,795,167 (-)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1536.4NCBI
RBFOX2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382235,738,736 - 36,028,824 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2235,738,736 - 36,028,824 (-)EnsemblGRCh38hg38GRCh38
GRCh372236,134,783 - 36,424,872 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362234,464,729 - 34,754,531 (-)NCBINCBI36Build 36hg18NCBI36
Build 342234,464,148 - 34,560,928NCBI
Celera2219,937,385 - 20,227,179 (-)NCBICelera
Cytogenetic Map22q12.3NCBI
HuRef2219,102,245 - 19,391,883 (-)NCBIHuRef
CHM1_12236,093,705 - 36,383,622 (-)NCBICHM1_1
T2T-CHM13v2.02236,198,484 - 36,488,569 (-)NCBIT2T-CHM13v2.0
Rbfox2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87110,691,230 - 110,934,901 (-)NCBIGRCr8
mRatBN7.27108,810,627 - 109,054,420 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7108,810,628 - 109,054,691 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7110,570,959 - 110,809,646 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07112,794,550 - 113,033,237 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07112,755,992 - 112,994,747 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07118,157,093 - 118,396,733 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7118,156,946 - 118,396,728 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07118,149,473 - 118,388,515 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47115,143,721 - 115,384,534 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17115,176,300 - 115,250,419 (-)NCBI
Celera7105,163,071 - 105,401,893 (-)NCBICelera
Cytogenetic Map7q34NCBI
Rbfox2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541322,035,837 - 22,287,763 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541322,034,048 - 22,288,430 (-)NCBIChiLan1.0ChiLan1.0
RBFOX2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22345,679,483 - 45,970,525 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12248,371,336 - 48,662,325 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02216,740,707 - 17,031,415 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12234,580,587 - 34,870,251 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2234,586,044 - 34,870,257 (-)Ensemblpanpan1.1panPan2
RBFOX2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11028,284,836 - 28,494,618 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1028,192,683 - 28,489,114 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1028,161,477 - 28,434,719 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01029,006,984 - 29,281,227 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1029,006,281 - 29,281,225 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11028,733,191 - 29,007,048 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01029,042,160 - 29,315,956 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01029,220,620 - 29,496,217 (+)NCBIUU_Cfam_GSD_1.0
Rbfox2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494511,613,596 - 11,816,299 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364924,645,167 - 4,821,291 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364924,624,013 - 4,826,715 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBFOX2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl511,633,541 - 11,903,094 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1511,633,523 - 11,905,325 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.259,682,598 - 9,774,702 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBFOX2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11918,507,184 - 18,801,535 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666045107,097,992 - 107,393,837 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbfox2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475211,765,679 - 12,022,320 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475211,766,033 - 12,027,804 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rbfox2
6944 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:7132
Count of miRNA genes:771
Interacting mature miRNAs:954
Transcripts:ENSMUST00000048145, ENSMUST00000111581, ENSMUST00000166610, ENSMUST00000171751
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155356339689584203Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
15092079Igly6_mIgG glycosylation 6, GP6 (mouse)157410054082674156Mouse
4142252Tailaq4_mtail length adjusted QTL 4 (mouse)Not determined348969478601286Mouse
1357703Vtbt17_mvertebral trabecular bone trait 17 (mouse)Not determined154455331378553437Mouse
13504731Cath5_mcarotid atherosclerosis 5 (mouse)155478912988789129Mouse
1558786Msq1_mMAV-1 susceptibility QTL 1 (mouse)Not determined156338964681086436Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse
1301006Hfib1_mhepatic fibrogenesis 1 (mouse)Not determined154730633481306479Mouse
27095936Ulnl4_mulna length 4, 5 week (mouse)155676339687684201Mouse
10755515Amzn3_manatomical modifier of Zfp423 3 (mouse)154638964680389845Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156552537699525499Mouse
1301429Pcir3_mperiosteal circumference 3 (mouse)Not determined154846536282465496Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154216339695497881Mouse
1357756Alaa4_malopecia areata 4 (mouse)Not determined154638964680389845Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
1301433Rapop5_mradiation-induced apoptosis 5 (mouse)Not determined15927302279474762Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
10412067Pain2_mpain 2 (mouse)Not determined155164533985645626Mouse
4141952W3q7_mweight 3 weeks QTL 7 (mouse)Not determined348969478601286Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
27226717Tibw4_mtibia width 4, proximal, 10 week (mouse)15612948178684200Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
4142198Hbtq_mhabituation QTL (mouse)Not determined155116070885160833Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155711700591117153Mouse
4142448Tailq6_mtail length QTL 6 (mouse)Not determined348969478601286Mouse
1357659Epfpq4_mepididymal fat percentage QTL 4 (mouse)Not determined15348969478601286Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
1301568Tria2_mT-cell receptor induced activation 2 (mouse)Not determined154485914178859281Mouse
1302080Szs13_mseizure susceptibility 13 (mouse)Not determined155168583285694449Mouse
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155711700591117153Mouse
10045637Heal27_mwound healing/regeneration 29 (mouse)Not determined155141836185418511Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567270698101270847Mouse
1301708Cocrb14_mcocaine related behavior 14 (mouse)Not determined155180651585806651Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156158420095584200Mouse
1302002Cocia2_mcocaine induced activation 2 (mouse)Not determined157237245979899178Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse
1357559Scfq2_msubcutaneous fat pad weight QTL 2 (mouse)Not determined15348969478601286Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156533657899341028Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156481182698811946Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse
13442492Mecth2_mmechanosensation threshold 2 (mouse)157466284979387201Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156316390397163995Mouse
1301472Pain1_mpain 1 (mouse)Not determined157532084690813185Mouse
27226729Tibmd2_mtibia midshaft diameter 2, 5 week (mouse)153800024486684201Mouse
1301860Gct3_mgranulosa cell tumorigenesis 3 (mouse)Not determined154740959681409691Mouse

Markers in Region
AU021833  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381577,136,393 - 77,136,601UniSTSGRCm38
MGSCv371576,966,823 - 76,967,031UniSTSGRCm37
Celera1578,624,447 - 78,624,655UniSTS
Cytogenetic Map15E1UniSTS
Whitehead/MRC_RH15647.77UniSTS
AI118529  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381577,082,490 - 77,082,594UniSTSGRCm38
MGSCv371576,912,920 - 76,913,024UniSTSGRCm37
Celera1578,570,563 - 78,570,667UniSTS
Cytogenetic Map15E1UniSTS
Whitehead/MRC_RH15649.46UniSTS
02.MMHAP17FA2.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381577,231,422 - 77,231,618UniSTSGRCm38
MGSCv371577,061,852 - 77,062,048UniSTSGRCm37
Celera1578,719,479 - 78,719,675UniSTS
Cytogenetic Map15E1UniSTS
Whitehead_YAC15 UniSTS
D15Mit146  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381577,257,787 - 77,257,911UniSTSGRCm38
MGSCv371577,088,217 - 77,088,341UniSTSGRCm37
Celera1578,745,910 - 78,746,034UniSTS
Cytogenetic Map15E1UniSTS
cM Map1545.1UniSTS
Whitehead Genetic1532.8UniSTS
Whitehead_YAC15 UniSTS
RH125552  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381577,082,385 - 77,082,544UniSTSGRCm38
MGSCv371576,912,815 - 76,912,974UniSTSGRCm37
Celera1578,570,458 - 78,570,617UniSTS
Cytogenetic Map15E1UniSTS
RH125714  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381577,082,349 - 77,082,598UniSTSGRCm38
MGSCv371576,912,779 - 76,913,028UniSTSGRCm37
Celera1578,570,422 - 78,570,671UniSTS
Cytogenetic Map15E1UniSTS
Whitehead/MRC_RH15656.35UniSTS
R75115  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381577,083,980 - 77,084,164UniSTSGRCm38
MGSCv371576,914,410 - 76,914,594UniSTSGRCm37
Celera1578,572,053 - 78,572,237UniSTS
Cytogenetic Map15E1UniSTS
Whitehead_YAC15 UniSTS
RH11177  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381577,079,015 - 77,079,178UniSTSGRCm38
MGSCv371576,909,445 - 76,909,608UniSTSGRCm37
Celera1578,567,087 - 78,567,250UniSTS
Cytogenetic Map15E1UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001110827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001110828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001110829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001110830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001286417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001286418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001286419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001358770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001358772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_053104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_175387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_177995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_177996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_177997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006521568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006521569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006521570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006521574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006521576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006521580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006521587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030248852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001781584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003951446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004938883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_384057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEKQ02178947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF229055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF387322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI853889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK139555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL591892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL603843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL772386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY659951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY659952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY659953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY904025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC002124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC115592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY238482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY247199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY254584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ017388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ017389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000048145   ⟹   ENSMUSP00000048056
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,968,002 - 77,190,805 (-)Ensembl
GRCm38.p6 Ensembl1577,083,802 - 77,306,605 (-)Ensembl
Ensembl Acc Id: ENSMUST00000111581   ⟹   ENSMUSP00000129372
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,964,679 - 77,037,986 (-)Ensembl
GRCm38.p6 Ensembl1577,080,479 - 77,153,786 (-)Ensembl
Ensembl Acc Id: ENSMUST00000166610   ⟹   ENSMUSP00000130673
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,963,191 - 77,038,012 (-)Ensembl
GRCm38.p6 Ensembl1577,078,991 - 77,153,812 (-)Ensembl
Ensembl Acc Id: ENSMUST00000171751   ⟹   ENSMUSP00000130739
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,963,190 - 77,191,128 (-)Ensembl
GRCm38.p6 Ensembl1577,078,990 - 77,306,928 (-)Ensembl
Ensembl Acc Id: ENSMUST00000226877
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1577,001,151 - 77,087,636 (-)Ensembl
GRCm38.p6 Ensembl1577,116,951 - 77,203,436 (-)Ensembl
Ensembl Acc Id: ENSMUST00000227314   ⟹   ENSMUSP00000154233
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,967,689 - 77,037,756 (-)Ensembl
GRCm38.p6 Ensembl1577,083,489 - 77,153,556 (-)Ensembl
Ensembl Acc Id: ENSMUST00000227533   ⟹   ENSMUSP00000154209
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,968,362 - 77,037,756 (-)Ensembl
GRCm38.p6 Ensembl1577,084,162 - 77,153,556 (-)Ensembl
Ensembl Acc Id: ENSMUST00000227930   ⟹   ENSMUSP00000154810
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,967,996 - 77,037,756 (-)Ensembl
GRCm38.p6 Ensembl1577,083,796 - 77,153,556 (-)Ensembl
Ensembl Acc Id: ENSMUST00000228087   ⟹   ENSMUSP00000153751
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,968,000 - 77,037,954 (-)Ensembl
GRCm38.p6 Ensembl1577,083,800 - 77,153,754 (-)Ensembl
Ensembl Acc Id: ENSMUST00000228190
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1577,000,570 - 77,016,980 (-)Ensembl
GRCm38.p6 Ensembl1577,116,370 - 77,132,780 (-)Ensembl
Ensembl Acc Id: ENSMUST00000228253   ⟹   ENSMUSP00000154021
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,968,014 - 76,970,355 (-)Ensembl
GRCm38.p6 Ensembl1577,083,814 - 77,086,155 (-)Ensembl
Ensembl Acc Id: ENSMUST00000228361   ⟹   ENSMUSP00000154719
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,982,181 - 77,129,706 (-)Ensembl
GRCm38.p6 Ensembl1577,097,981 - 77,245,506 (-)Ensembl
Ensembl Acc Id: ENSMUST00000228558   ⟹   ENSMUSP00000154522
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,982,266 - 77,129,786 (-)Ensembl
GRCm38.p6 Ensembl1577,098,066 - 77,245,586 (-)Ensembl
Ensembl Acc Id: ENSMUST00000228582   ⟹   ENSMUSP00000154408
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,997,806 - 77,191,204 (-)Ensembl
GRCm38.p6 Ensembl1577,113,606 - 77,307,004 (-)Ensembl
Ensembl Acc Id: ENSMUST00000230194
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,968,108 - 76,973,900 (-)Ensembl
GRCm38.p6 Ensembl1577,083,908 - 77,089,700 (-)Ensembl
RefSeq Acc Id: NM_001110827   ⟹   NP_001104297
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,191,098 (-)NCBI
GRCm381577,078,990 - 77,307,053 (-)NCBI
MGSCv371576,909,420 - 77,137,483 (-)RGD
Celera1578,567,062 - 78,795,167 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001110828   ⟹   NP_001104298
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,037,994 (-)NCBI
GRCm381577,078,990 - 77,153,812 (-)NCBI
MGSCv371576,909,420 - 77,137,483 (-)RGD
Celera1578,567,062 - 78,795,167 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001110829   ⟹   NP_001104299
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,037,994 (-)NCBI
GRCm381577,078,990 - 77,153,812 (-)NCBI
MGSCv371576,909,420 - 77,137,483 (-)RGD
Celera1578,567,062 - 78,795,167 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001110830   ⟹   NP_001104300
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,037,994 (-)NCBI
GRCm381577,078,990 - 77,153,812 (-)NCBI
MGSCv371576,909,420 - 77,137,483 (-)RGD
Celera1578,567,062 - 78,795,167 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001286417   ⟹   NP_001273346
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,037,994 (-)NCBI
GRCm381577,078,990 - 77,153,812 (-)NCBI
Celera1578,567,062 - 78,795,167 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001286418   ⟹   NP_001273347
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,037,994 (-)NCBI
GRCm381577,078,990 - 77,153,812 (-)NCBI
Celera1578,567,062 - 78,795,167 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001286419   ⟹   NP_001273348
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,037,994 (-)NCBI
GRCm381577,078,990 - 77,153,812 (-)NCBI
Celera1578,567,062 - 78,795,167 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001358770   ⟹   NP_001345699
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,129,757 (-)NCBI
GRCm381577,078,990 - 77,245,608 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001358772   ⟹   NP_001345701
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,129,757 (-)NCBI
GRCm381577,078,990 - 77,245,608 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001412007   ⟹   NP_001398936
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,191,098 (-)NCBI
RefSeq Acc Id: NM_001412008   ⟹   NP_001398937
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,191,098 (-)NCBI
RefSeq Acc Id: NM_001412009   ⟹   NP_001398938
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,191,098 (-)NCBI
RefSeq Acc Id: NM_001412010   ⟹   NP_001398939
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,191,098 (-)NCBI
RefSeq Acc Id: NM_001412011   ⟹   NP_001398940
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,191,098 (-)NCBI
RefSeq Acc Id: NM_001412012   ⟹   NP_001398941
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,191,098 (-)NCBI
RefSeq Acc Id: NM_001412013   ⟹   NP_001398942
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,191,098 (-)NCBI
RefSeq Acc Id: NM_001412014   ⟹   NP_001398943
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,129,757 (-)NCBI
RefSeq Acc Id: NM_001412015   ⟹   NP_001398944
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,129,757 (-)NCBI
RefSeq Acc Id: NM_001412016   ⟹   NP_001398945
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,129,757 (-)NCBI
RefSeq Acc Id: NM_001412017   ⟹   NP_001398946
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,129,757 (-)NCBI
RefSeq Acc Id: NM_001412018   ⟹   NP_001398947
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,129,757 (-)NCBI
RefSeq Acc Id: NM_001412019   ⟹   NP_001398948
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,129,757 (-)NCBI
RefSeq Acc Id: NM_001412020   ⟹   NP_001398949
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,087,610 (-)NCBI
RefSeq Acc Id: NM_001412021   ⟹   NP_001398950
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,087,610 (-)NCBI
RefSeq Acc Id: NM_001412022   ⟹   NP_001398951
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,047,367 (-)NCBI
RefSeq Acc Id: NM_001412023   ⟹   NP_001398952
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,047,367 (-)NCBI
RefSeq Acc Id: NM_001412024   ⟹   NP_001398953
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,037,994 (-)NCBI
RefSeq Acc Id: NM_001412025   ⟹   NP_001398954
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,037,994 (-)NCBI
RefSeq Acc Id: NM_001412026   ⟹   NP_001398955
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,037,994 (-)NCBI
RefSeq Acc Id: NM_001412027   ⟹   NP_001398956
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,037,994 (-)NCBI
RefSeq Acc Id: NM_001412028   ⟹   NP_001398957
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,037,994 (-)NCBI
RefSeq Acc Id: NM_001412029   ⟹   NP_001398958
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,037,994 (-)NCBI
RefSeq Acc Id: NM_001412030   ⟹   NP_001398959
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,037,994 (-)NCBI
RefSeq Acc Id: NM_001412031   ⟹   NP_001398960
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,037,518 (-)NCBI
RefSeq Acc Id: NM_001412032   ⟹   NP_001398961
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,037,518 (-)NCBI
RefSeq Acc Id: NM_053104   ⟹   NP_444334
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,191,098 (-)NCBI
GRCm381577,078,990 - 77,307,053 (-)NCBI
MGSCv371576,909,420 - 77,137,483 (-)RGD
Celera1578,567,062 - 78,795,167 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_175387   ⟹   NP_780596
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,191,098 (-)NCBI
GRCm381577,078,990 - 77,307,053 (-)NCBI
MGSCv371576,909,420 - 77,137,483 (-)RGD
Celera1578,567,062 - 78,795,167 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_177995
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,037,994 (-)NCBI
RefSeq Acc Id: NR_177996
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,037,994 (-)NCBI
RefSeq Acc Id: NR_177997
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,037,994 (-)NCBI
RefSeq Acc Id: XM_006521568   ⟹   XP_006521631
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,193,058 (-)NCBI
GRCm381577,078,990 - 77,308,434 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006521569   ⟹   XP_006521632
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,193,058 (-)NCBI
GRCm381577,078,990 - 77,308,434 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006521570   ⟹   XP_006521633
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,193,058 (-)NCBI
GRCm381577,078,990 - 77,308,434 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006521574   ⟹   XP_006521637
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,193,058 (-)NCBI
GRCm381577,078,990 - 77,308,434 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006521576   ⟹   XP_006521639
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,193,058 (-)NCBI
GRCm381577,078,990 - 77,308,434 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006521580   ⟹   XP_006521643
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,193,058 (-)NCBI
GRCm381577,078,990 - 77,308,434 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006521587   ⟹   XP_006521650
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,193,058 (-)NCBI
GRCm381577,078,990 - 77,308,434 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030248852   ⟹   XP_030104712
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,976,012 - 77,130,158 (-)NCBI
GRCm381577,091,812 - 77,245,968 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036159654   ⟹   XP_036015547
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,193,058 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036159655   ⟹   XP_036015548
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,193,058 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036159656   ⟹   XP_036015549
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,193,058 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001781584
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,193,058 (-)NCBI
GRCm381577,078,990 - 77,308,434 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003951446
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,193,058 (-)NCBI
GRCm381577,078,990 - 77,308,434 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004938883
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,193,058 (-)NCBI
Sequence:
RefSeq Acc Id: XR_384057
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,963,190 - 77,193,058 (-)NCBI
GRCm381577,078,990 - 77,308,434 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001104297 (Get FASTA)   NCBI Sequence Viewer  
  NP_001104298 (Get FASTA)   NCBI Sequence Viewer  
  NP_001104299 (Get FASTA)   NCBI Sequence Viewer  
  NP_001104300 (Get FASTA)   NCBI Sequence Viewer  
  NP_001273346 (Get FASTA)   NCBI Sequence Viewer  
  NP_001273347 (Get FASTA)   NCBI Sequence Viewer  
  NP_001273348 (Get FASTA)   NCBI Sequence Viewer  
  NP_001345699 (Get FASTA)   NCBI Sequence Viewer  
  NP_001345701 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398936 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398937 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398938 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398939 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398940 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398941 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398942 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398943 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398944 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398945 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398946 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398947 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398948 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398949 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398950 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398951 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398952 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398953 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398954 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398955 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398956 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398957 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398958 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398959 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398960 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398961 (Get FASTA)   NCBI Sequence Viewer  
  NP_444334 (Get FASTA)   NCBI Sequence Viewer  
  NP_780596 (Get FASTA)   NCBI Sequence Viewer  
  XP_006521631 (Get FASTA)   NCBI Sequence Viewer  
  XP_006521632 (Get FASTA)   NCBI Sequence Viewer  
  XP_006521633 (Get FASTA)   NCBI Sequence Viewer  
  XP_006521637 (Get FASTA)   NCBI Sequence Viewer  
  XP_006521639 (Get FASTA)   NCBI Sequence Viewer  
  XP_006521643 (Get FASTA)   NCBI Sequence Viewer  
  XP_006521650 (Get FASTA)   NCBI Sequence Viewer  
  XP_030104712 (Get FASTA)   NCBI Sequence Viewer  
  XP_036015547 (Get FASTA)   NCBI Sequence Viewer  
  XP_036015548 (Get FASTA)   NCBI Sequence Viewer  
  XP_036015549 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH02124 (Get FASTA)   NCBI Sequence Viewer  
  AAH27263 (Get FASTA)   NCBI Sequence Viewer  
  AAK64287 (Get FASTA)   NCBI Sequence Viewer  
  AAL71902 (Get FASTA)   NCBI Sequence Viewer  
  AAV74334 (Get FASTA)   NCBI Sequence Viewer  
  AAV74335 (Get FASTA)   NCBI Sequence Viewer  
  AAV74336 (Get FASTA)   NCBI Sequence Viewer  
  AAX84842 (Get FASTA)   NCBI Sequence Viewer  
  AAY78494 (Get FASTA)   NCBI Sequence Viewer  
  AAY78495 (Get FASTA)   NCBI Sequence Viewer  
  BAC32147 (Get FASTA)   NCBI Sequence Viewer  
  BAC36885 (Get FASTA)   NCBI Sequence Viewer  
  EDL29632 (Get FASTA)   NCBI Sequence Viewer  
  EDL29633 (Get FASTA)   NCBI Sequence Viewer  
  EDL29634 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000048056
  ENSMUSP00000048056.6
  ENSMUSP00000129372
  ENSMUSP00000129372.3
  ENSMUSP00000130739
  ENSMUSP00000130739.2
  ENSMUSP00000153751
  ENSMUSP00000153751.2
  ENSMUSP00000154021.2
  ENSMUSP00000154209
  ENSMUSP00000154209.2
  ENSMUSP00000154233
  ENSMUSP00000154233.2
  ENSMUSP00000154408.2
  ENSMUSP00000154522
  ENSMUSP00000154522.2
  ENSMUSP00000154719.2
  ENSMUSP00000154810
  ENSMUSP00000154810.2
GenBank Protein Q8BP71 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_444334   ⟸   NM_053104
- Peptide Label: isoform 1
- UniProtKB: Q8VI62 (UniProtKB/Swiss-Prot),   Q8R2T5 (UniProtKB/Swiss-Prot),   Q8BRG0 (UniProtKB/Swiss-Prot),   Q537D5 (UniProtKB/Swiss-Prot),   Q537D4 (UniProtKB/Swiss-Prot),   Q0VH84 (UniProtKB/Swiss-Prot),   Q0R5Z8 (UniProtKB/Swiss-Prot),   Q0R5Z7 (UniProtKB/Swiss-Prot),   Q923W8 (UniProtKB/Swiss-Prot),   Q8BP71 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_780596   ⟸   NM_175387
- Peptide Label: isoform 2
- UniProtKB: Q8BP71 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001104297   ⟸   NM_001110827
- Peptide Label: isoform 3
- UniProtKB: Q8BP71 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001104298   ⟸   NM_001110828
- Peptide Label: isoform 4
- UniProtKB: Q8BP71 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001104299   ⟸   NM_001110829
- Peptide Label: isoform 5
- UniProtKB: Q8BP71 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001104300   ⟸   NM_001110830
- Peptide Label: isoform 6
- UniProtKB: Q8BP71 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001273347   ⟸   NM_001286418
- Peptide Label: isoform 8
- UniProtKB: Q8BP71 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001273348   ⟸   NM_001286419
- Peptide Label: isoform 9
- UniProtKB: Q8BP71 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001273346   ⟸   NM_001286417
- Peptide Label: isoform 7
- UniProtKB: A0A2K6EDK7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006521650   ⟸   XM_006521587
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_006521633   ⟸   XM_006521570
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006521639   ⟸   XM_006521576
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006521643   ⟸   XM_006521580
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_006521637   ⟸   XM_006521574
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006521631   ⟸   XM_006521568
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006521632   ⟸   XM_006521569
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001345699   ⟸   NM_001358770
- Peptide Label: isoform 10
RefSeq Acc Id: NP_001345701   ⟸   NM_001358772
- Peptide Label: isoform 12
RefSeq Acc Id: XP_030104712   ⟸   XM_030248852
- Peptide Label: isoform X36
- UniProtKB: A0A2I3BRU6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000129372   ⟸   ENSMUST00000111581
Ensembl Acc Id: ENSMUSP00000130673   ⟸   ENSMUST00000166610
Ensembl Acc Id: ENSMUSP00000048056   ⟸   ENSMUST00000048145
Ensembl Acc Id: ENSMUSP00000130739   ⟸   ENSMUST00000171751
Ensembl Acc Id: ENSMUSP00000153751   ⟸   ENSMUST00000228087
Ensembl Acc Id: ENSMUSP00000154719   ⟸   ENSMUST00000228361
Ensembl Acc Id: ENSMUSP00000154021   ⟸   ENSMUST00000228253
Ensembl Acc Id: ENSMUSP00000154209   ⟸   ENSMUST00000227533
Ensembl Acc Id: ENSMUSP00000154810   ⟸   ENSMUST00000227930
Ensembl Acc Id: ENSMUSP00000154233   ⟸   ENSMUST00000227314
Ensembl Acc Id: ENSMUSP00000154408   ⟸   ENSMUST00000228582
Ensembl Acc Id: ENSMUSP00000154522   ⟸   ENSMUST00000228558
RefSeq Acc Id: XP_036015547   ⟸   XM_036159654
- Peptide Label: isoform X7
RefSeq Acc Id: XP_036015549   ⟸   XM_036159656
- Peptide Label: isoform X18
RefSeq Acc Id: XP_036015548   ⟸   XM_036159655
- Peptide Label: isoform X14
RefSeq Acc Id: NP_001398941   ⟸   NM_001412012
- Peptide Label: isoform 17
RefSeq Acc Id: NP_001398939   ⟸   NM_001412010
- Peptide Label: isoform 16
RefSeq Acc Id: NP_001398942   ⟸   NM_001412013
- Peptide Label: isoform 18
RefSeq Acc Id: NP_001398940   ⟸   NM_001412011
- Peptide Label: isoform 37
RefSeq Acc Id: NP_001398938   ⟸   NM_001412009
- Peptide Label: isoform 15
RefSeq Acc Id: NP_001398937   ⟸   NM_001412008
- Peptide Label: isoform 14
RefSeq Acc Id: NP_001398936   ⟸   NM_001412007
- Peptide Label: isoform 13
RefSeq Acc Id: NP_001398948   ⟸   NM_001412019
- Peptide Label: isoform 24
RefSeq Acc Id: NP_001398944   ⟸   NM_001412015
- Peptide Label: isoform 20
RefSeq Acc Id: NP_001398947   ⟸   NM_001412018
- Peptide Label: isoform 23
RefSeq Acc Id: NP_001398945   ⟸   NM_001412016
- Peptide Label: isoform 21
RefSeq Acc Id: NP_001398946   ⟸   NM_001412017
- Peptide Label: isoform 22
RefSeq Acc Id: NP_001398943   ⟸   NM_001412014
- Peptide Label: isoform 19
RefSeq Acc Id: NP_001398950   ⟸   NM_001412021
- Peptide Label: isoform 26
RefSeq Acc Id: NP_001398949   ⟸   NM_001412020
- Peptide Label: isoform 25
RefSeq Acc Id: NP_001398952   ⟸   NM_001412023
- Peptide Label: isoform 28
RefSeq Acc Id: NP_001398951   ⟸   NM_001412022
- Peptide Label: isoform 27
RefSeq Acc Id: NP_001398958   ⟸   NM_001412029
- Peptide Label: isoform 33
RefSeq Acc Id: NP_001398956   ⟸   NM_001412027
- Peptide Label: isoform 38
RefSeq Acc Id: NP_001398957   ⟸   NM_001412028
- Peptide Label: isoform 32
RefSeq Acc Id: NP_001398955   ⟸   NM_001412026
- Peptide Label: isoform 31
RefSeq Acc Id: NP_001398959   ⟸   NM_001412030
- Peptide Label: isoform 34
RefSeq Acc Id: NP_001398953   ⟸   NM_001412024
- Peptide Label: isoform 29
RefSeq Acc Id: NP_001398954   ⟸   NM_001412025
- Peptide Label: isoform 30
RefSeq Acc Id: NP_001398961   ⟸   NM_001412032
- Peptide Label: isoform 36
RefSeq Acc Id: NP_001398960   ⟸   NM_001412031
- Peptide Label: isoform 35
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BP71-F1-model_v2 AlphaFold Q8BP71 1-449 view protein structure

Promoters
RGD ID:6826422
Promoter ID:MM_KWN:18928
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver,   MEF_B6
Transcripts:ENSMUST00000063150
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361576,964,786 - 76,965,286 (-)MPROMDB
RGD ID:6826423
Promoter ID:MM_KWN:18929
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000096360,   NM_001110828,   NM_001110829,   NM_001110830,   UC007WNC.1,   UC007WNF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361576,984,056 - 76,984,807 (-)MPROMDB
RGD ID:6848684
Promoter ID:MM_TRO:3581
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Liver
Transcripts:MTR002140.15.1058.3
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361577,033,994 - 77,034,494 (-)MPROMDB
RGD ID:6847277
Promoter ID:MM_ACW:18536
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:RBM9.ISEP07,   RBM9.KSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361577,075,746 - 77,076,246 (-)MPROMDB
RGD ID:6826424
Promoter ID:MM_KWN:18930
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_001110827,   NM_053104,   NM_175387
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361577,137,036 - 77,137,832 (-)MPROMDB
RGD ID:8684188
Promoter ID:EPDNEW_M20125
Type:initiation region
Name:Rbfox2_1
Description:Mus musculus RNA binding protein, fox-1 homolog 2 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20126  EPDNEW_M20127  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381577,153,794 - 77,153,854EPDNEW
RGD ID:8684190
Promoter ID:EPDNEW_M20126
Type:multiple initiation site
Name:Rbfox2_3
Description:Mus musculus RNA binding protein, fox-1 homolog 2 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20125  EPDNEW_M20127  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381577,306,898 - 77,306,958EPDNEW
RGD ID:8684192
Promoter ID:EPDNEW_M20127
Type:initiation region
Name:Rbfox2_2
Description:Mus musculus RNA binding protein, fox-1 homolog 2 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20125  EPDNEW_M20126  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381577,307,008 - 77,307,068EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1933973 AgrOrtholog
Ensembl Genes ENSMUSG00000033565 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000048145 ENTREZGENE
  ENSMUST00000048145.13 UniProtKB/Swiss-Prot
  ENSMUST00000111581 ENTREZGENE
  ENSMUST00000111581.4 UniProtKB/TrEMBL
  ENSMUST00000171751 ENTREZGENE
  ENSMUST00000171751.10 UniProtKB/Swiss-Prot
  ENSMUST00000227314 ENTREZGENE
  ENSMUST00000227314.2 UniProtKB/Swiss-Prot
  ENSMUST00000227533 ENTREZGENE
  ENSMUST00000227533.2 UniProtKB/Swiss-Prot
  ENSMUST00000227930 ENTREZGENE
  ENSMUST00000227930.2 UniProtKB/Swiss-Prot
  ENSMUST00000228087 ENTREZGENE
  ENSMUST00000228087.2 UniProtKB/Swiss-Prot
  ENSMUST00000228253.2 UniProtKB/TrEMBL
  ENSMUST00000228361.2 UniProtKB/TrEMBL
  ENSMUST00000228558 ENTREZGENE
  ENSMUST00000228558.2 UniProtKB/TrEMBL
  ENSMUST00000228582.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Fox-1_C_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FOX1_RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBFOX1-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNA-bd_Fox-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:93686 UniProtKB/Swiss-Prot
MGD MGI:1933973 ENTREZGENE
NCBI Gene 93686 ENTREZGENE
PANTHER ATAXIN 2-BINDING PROTEIN 1-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNA BINDING PROTEIN FOX-1 HOMOLOG 2 UniProtKB/Swiss-Prot
  RNA BINDING PROTEIN FOX-1 HOMOLOG 2 UniProtKB/TrEMBL
  RNA BINDING PROTEIN FOX-1 HOMOLOG 2 UniProtKB/TrEMBL
Pfam Fox-1_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rbfox2 PhenoGen
PIRSF Ataxin_2_bd_A2BP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A2I3BQD1_MOUSE UniProtKB/TrEMBL
  A0A2I3BR20_MOUSE UniProtKB/TrEMBL
  A0A2I3BRA9_MOUSE UniProtKB/TrEMBL
  A0A2I3BRU6 ENTREZGENE, UniProtKB/TrEMBL
  A0A2K6EDK7 ENTREZGENE, UniProtKB/TrEMBL
  Q0R5Z7 ENTREZGENE
  Q0R5Z8 ENTREZGENE
  Q0VH84 ENTREZGENE
  Q537D4 ENTREZGENE
  Q537D5 ENTREZGENE
  Q8BP71 ENTREZGENE
  Q8BRG0 ENTREZGENE
  Q8R2T5 ENTREZGENE
  Q8VI62 ENTREZGENE
  Q923W8 ENTREZGENE
  RFOX2_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q0R5Z7 UniProtKB/Swiss-Prot
  Q0R5Z8 UniProtKB/Swiss-Prot
  Q0VH84 UniProtKB/Swiss-Prot
  Q537D4 UniProtKB/Swiss-Prot
  Q537D5 UniProtKB/Swiss-Prot
  Q8BRG0 UniProtKB/Swiss-Prot
  Q8R2T5 UniProtKB/Swiss-Prot
  Q8VI62 UniProtKB/Swiss-Prot
  Q923W8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Rbfox2  RNA binding protein, fox-1 homolog (C. elegans) 2  Rbm9  RNA binding motif protein 9  Symbol and/or name change 5135510 APPROVED