Npm3 (nucleophosmin/nucleoplasmin 3)

Gene: Npm3 (nucleophosmin/nucleoplasmin 3) Chinchilla lanigera

Analyze

Symbol:

Npm3

Name:

nucleophosmin/nucleoplasmin 3

RGD ID:

8760873

Description:

INVOLVED IN rRNA processing (ortholog); rRNA transcription (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); genetic disease (ortholog); lung adenocarcinoma (ortholog); FOUND IN actin cytoskeleton (ortholog); cytosol (ortholog); nucleolus (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

nucleoplasmin-3

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

NCBI Annotation Information:

Annotation category: partial on reference assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955485	8,510,404 - 8,512,198 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Animal Disease Models (ISO)

genetic disease (ISO)

lung adenocarcinoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

rRNA processing (ISO)

rRNA transcription (ISO)

Cellular Component

actin cytoskeleton (ISO)

cytosol (ISO)

nucleolus (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Npm3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955485	8,510,404 - 8,512,198 (+)	NCBI	ChiLan1.0	ChiLan1.0

NPM3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	101,781,325 - 101,783,446 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	101,781,325 - 101,783,446 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	103,541,082 - 103,543,203 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	103,531,072 - 103,533,148 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	103,531,072 - 103,533,148	NCBI
Celera	10	97,279,823 - 97,281,911 (-)	NCBI		Celera
Cytogenetic Map	10	q24.32	NCBI
HuRef	10	97,171,620 - 97,173,708 (-)	NCBI		HuRef
CHM1_1	10	103,824,671 - 103,826,759 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	102,664,820 - 102,666,941 (-)	NCBI		T2T-CHM13v2.0

Npm3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	45,736,173 - 45,738,004 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	45,736,173 - 45,738,030 (-)	Ensembl		GRCm39 Ensembl
GRCm38	19	45,747,734 - 45,749,565 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	45,747,734 - 45,749,591 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	45,822,224 - 45,824,053 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	45,801,045 - 45,802,874 (-)	NCBI		MGSCv36	mm8
MGSCv36	6	85,973,422 - 85,973,982 (+)	NCBI		MGSCv36	mm8
Celera	19	46,510,072 - 46,511,482 (-)	NCBI		Celera
Cytogenetic Map	19	C3	NCBI
cM Map	19	38.75	NCBI

Npm3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	254,544,664 - 254,546,649 (-)	NCBI		GRCr8
mRatBN7.2	1	244,595,638 - 244,597,623 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	244,595,644 - 244,597,591 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	252,736,901 - 252,738,887 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	259,435,147 - 259,437,136 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	252,087,083 - 252,089,073 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	265,504,105 - 265,506,080 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	265,504,575 - 265,506,046 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	272,934,345 - 272,936,316 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	250,961,968 - 250,963,813 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	240,404,815 - 240,406,790 (-)	NCBI		Celera
Cytogenetic Map	1	q54	NCBI

NPM3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	113,668,062 - 113,670,185 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	113,673,381 - 113,675,504 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	98,384,024 - 98,386,131 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	101,855,759 - 101,857,843 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	101,855,759 - 101,857,845 (-)	Ensembl	panpan1.1		panPan2

NPM3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	14,373,446 - 14,375,624 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	14,373,452 - 14,404,541 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	14,541,903 - 14,544,058 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	14,841,366 - 14,843,521 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	14,841,371 - 14,843,555 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	14,387,822 - 14,389,977 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	14,427,403 - 14,429,558 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	14,559,723 - 14,561,878 (-)	NCBI		UU_Cfam_GSD_1.0

Npm3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	32,394,303 - 32,396,395 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936600	3,997,285 - 3,999,630 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936600	3,997,549 - 3,999,620 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NPM3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	112,819,393 - 112,821,367 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	112,819,390 - 112,822,244 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	122,671,438 - 122,674,250 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NPM3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	94,809,050 - 94,811,169 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	94,809,468 - 94,811,091 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	55,885,408 - 55,887,495 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Npm3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624831	1,261,652 - 1,263,387 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624831	1,261,652 - 1,263,417 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013504107	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01058717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01058718	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBBH01139937	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDJ01088446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_013504107 ⟹ XP_013359561

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955485	8,510,404 - 8,512,198 (+)	NCBI

Sequence:

show sequence

CGCCCGCGTCGGTGCCTTTAAGGGGCGTGGCCGGAAGCCGCTGGGTTCCGCACGCGTCGGGGCG
GGGCTTCAGGACGGCTTCGCAGCATGGCCGCCGCCGCCGCCGCGTTCCTGAGCCCAGAGAGTCG
GGTCCGGGTCGCGGGCGTCGGGGGCGTCCGGGCCCCCGCCCCGGTCACCATGGACAGCTTCTTC
TTCGGCTGCGAGCTCTCCAGCCACACCCGCGCCTTCACCTTCAGCGTGGAGCAGGAGGACGGCG
CGGAGCACGTGCTGGCGCTGGCCATGCTCTGCCTCACCGAGGGCGCCAAGGACGAGTGCAACGT
GGTGGAGGTGGTGGCCCGGAGCCACGACCACCGGGAGATCGCGGTGCCCGTGGCCAACCTCCGG
CTGTCCTGCCAGCCCATGGTGAGGCGCGGGCGCGGGCGCGGGCTCCCGCTCCCTCGGCGGGCGG
CGCCGGCGGCCTCACCTCCGTCTCCCTCCCAGCTCAGCTTGGACGACTTCCAGCTGCAGCCGCC
CGTCACCTTCCGCCTGCGGTCGGGCTCGGGCCCGGTGCGGATCACCGGGCGGCACCAGATCGTT
ACCGTAAGCAACGACGTCTCCGAGGACGAGGAGGATGACGAAGAAGCAGCAGAGCTGTGCCCCG
TCCTTCCTGCTAAAAAGCAGAGGCCCAGGCCCTAGCCCTCCTCGGTCAGGGAGCCGGCGGGCTC
GCGCTCCGCGCCCGGCGTTCCTGGACGAGTCTCAGGATTGTGACTGTTTCTTCCCCGCGGAGGA
GCAGCGTTGTGGGGCAGAGCCTGGGCGGGACGGACTGGGCCCTGCCGGCCCCCGGTGCTCCGGC
CCTCCGCCAAGCCCCGCTCCCCGCTCCCCAACTTCTGTGAATTGGAAGATGTACCTGAAGCTCA
GAACTACACGTTTTTAACACTTTTTACAGTTTTAGATAAAGTTTGAAATAAAGTGATGTGGTTT
CTTTTGCAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_013359561	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_013359561 ⟸ XM_013504107
- Sequence:	show sequence MAAAAAAFLSPESRVRVAGVGGVRAPAPVTMDSFFFGCELSSHTRAFTFSVEQEDGAEHVLALA MLCLTEGAKDECNVVEVVARSHDHREIAVPVANLRLSCQPMVRRGRGRGLPLPRRAAPAASPPS PSQLSLDDFQLQPPVTFRLRSGSGPVRITGRHQIVTVSNDVSEDEEDDEEAAELCPVLPAKKQR PRP hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	LOC102025013	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-08-25	Npm3	nucleophosmin/nucleoplasmin 3	LOC102025013	uncharacterized LOC102025013	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD