Dcaf13 (DDB1 and CUL4 associated factor 13) - Rat Genome Database

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Gene: Dcaf13 (DDB1 and CUL4 associated factor 13) Chinchilla lanigera
Analyze
Symbol: Dcaf13
Name: DDB1 and CUL4 associated factor 13
RGD ID: 8831627
Description: ENCODES a protein that exhibits nuclear estrogen receptor binding (ortholog); ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN decidualization (ortholog); epigenetic programming in the zygotic pronuclei (ortholog); oocyte growth (ortholog); ASSOCIATED WITH Cohen syndrome (ortholog); FOUND IN cell junction (ortholog); centrosome (ortholog); Cul4-RING E3 ubiquitin ligase complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DDB1- and CUL4-associated factor 13
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541727,544,242 - 27,569,715 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541727,545,128 - 27,567,829 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Dcaf13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541727,544,242 - 27,569,715 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541727,545,128 - 27,567,829 (+)NCBIChiLan1.0ChiLan1.0
DCAF13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388103,415,386 - 103,443,453 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8103,414,714 - 103,443,453 (+)EnsemblGRCh38hg38GRCh38
GRCh378104,427,614 - 104,455,681 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368104,496,118 - 104,524,376 (+)NCBINCBI36Build 36hg18NCBI36
Celera8100,613,481 - 100,642,207 (+)NCBICelera
Cytogenetic Map8q22.3NCBI
HuRef899,627,291 - 99,656,018 (+)NCBIHuRef
CHM1_18104,467,741 - 104,496,445 (+)NCBICHM1_1
T2T-CHM13v2.08104,543,035 - 104,571,087 (+)NCBIT2T-CHM13v2.0
Dcaf13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391538,976,300 - 39,010,251 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1538,976,260 - 39,010,251 (+)EnsemblGRCm39 Ensembl
GRCm381539,112,874 - 39,146,856 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1539,112,865 - 39,146,856 (+)EnsemblGRCm38mm10GRCm38
MGSCv371538,944,420 - 38,978,402 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361538,943,006 - 38,976,930 (+)NCBIMGSCv36mm8
Celera1539,600,285 - 39,634,269 (+)NCBICelera
Cytogenetic Map15B3.1NCBI
cM Map1515.42NCBI
Dcaf13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8772,045,828 - 72,081,039 (+)NCBIGRCr8
mRatBN7.2770,160,983 - 70,196,142 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl770,160,941 - 70,196,142 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx772,034,138 - 72,069,389 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0774,236,651 - 74,271,908 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0774,104,737 - 74,139,984 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0778,005,232 - 78,040,220 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl778,005,232 - 78,040,214 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0778,209,274 - 78,244,263 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4774,668,602 - 74,703,968 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1774,689,351 - 74,724,698 (+)NCBI
Celera767,217,401 - 67,252,558 (+)NCBICelera
Cytogenetic Map7q31NCBI
DCAF13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27120,780,993 - 120,809,175 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1896,317,081 - 96,345,064 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08100,070,628 - 100,098,885 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18102,226,116 - 102,254,900 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8102,226,116 - 102,254,900 (+)Ensemblpanpan1.1panPan2
DCAF13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1134,835,147 - 4,860,706 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl134,834,958 - 4,860,247 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha134,838,774 - 4,863,783 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0134,999,335 - 5,024,396 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl134,999,453 - 5,025,111 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1134,839,637 - 4,864,677 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0134,957,559 - 4,982,592 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0134,970,339 - 4,995,381 (+)NCBIUU_Cfam_GSD_1.0
Dcaf13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530332,895,023 - 32,931,004 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647040,320,073 - 40,356,993 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647040,321,103 - 40,357,001 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DCAF13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl433,672,871 - 33,704,573 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1433,672,867 - 33,704,888 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2436,445,544 - 36,477,231 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DCAF13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1898,271,304 - 98,297,950 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603942,303,922 - 42,330,346 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dcaf13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476319,955,408 - 19,980,620 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476319,955,368 - 19,980,480 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000009591   ⟹   ENSCLAP00000009462
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541727,544,242 - 27,569,715 (+)Ensembl
RefSeq Acc Id: XM_005381951   ⟹   XP_005382008
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541727,545,128 - 27,567,829 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005382008 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000009462
  ENSCLAP00000009462.1
RefSeq Acc Id: XP_005382008   ⟸   XM_005381951
- UniProtKB: A0A8C2V8X5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000009462   ⟸   ENSCLAT00000009591

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006565 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000009591 ENTREZGENE
  ENSCLAT00000009591.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro Sof1 UniProtKB/TrEMBL
  TIF_beta_prop-like UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
  WD_repeat_DCAF13/WDSOF1 UniProtKB/TrEMBL
NCBI Gene Dcaf13 ENTREZGENE
PANTHER DDB1- AND CUL4-ASSOCIATED FACTOR 13 UniProtKB/TrEMBL
  U3 SMALL NUCLEOLAR RNA U3 SNORNA ASSOCIATED PROTEIN UniProtKB/TrEMBL
Pfam eIF2A UniProtKB/TrEMBL
  Sof1 UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A8C2V8X5 ENTREZGENE, UniProtKB/TrEMBL