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ONTOLOGY REPORT - ANNOTATIONS

Term:tRNA processing
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Accession:GO:0008033 term browser browse the term
Definition:The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
Synonyms:exact_synonym: tRNA maturation


show annotations for term's descendants           Sort by:
tRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adat1 adenosine deaminase, tRNA-specific 1 involved_in ISO
IBA		 (PMID:10430867)
GO_REF:0000033		 RGD
GO_Central		 PMID:10430867 GO_REF:0000033 NCBI chr19:39,918,083...39,956,886
Ensembl chr19:39,918,227...39,956,883 		JBrowse link
G Adat3 adenosine deaminase, tRNA-specific 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:9,109,070...9,113,673
Ensembl chr 7:9,101,187...9,115,340 		JBrowse link
G Dtwd1 DTW domain containing 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:113,392,402...113,409,322
Ensembl chr 3:113,392,457...113,408,105 		JBrowse link
G Fars2 phenylalanyl-tRNA synthetase 2, mitochondrial involved_in ISO
ISS		 (PMID:10329163)
GO_REF:0000024		 RGD
UniProt		 PMID:10329163 GO_REF:0000024 NCBI chr17:28,319,215...28,746,217
Ensembl chr17:28,319,280...28,746,337 		JBrowse link
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr19:29,098,254...29,112,858
Ensembl chr13:42,114,032...42,116,484
Ensembl chr19:42,114,032...42,116,484 		JBrowse link
G Lsm6l1 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated like 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr13:42,114,013...42,116,559
Ensembl chr13:42,114,032...42,116,484 		JBrowse link
G Pop1 POP1 homolog, ribonuclease P/MRP subunit involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:65,705,348...65,733,143
Ensembl chr 7:65,705,368...65,733,141 		JBrowse link
G Pop5 POP5 homolog, ribonuclease P/MRP subunit acts_upstream_of_or_within ISO (PMID:11413139) RGD PMID:11413139 NCBI chr12:41,376,755...41,384,882
Ensembl chr12:41,376,755...41,381,336 		JBrowse link
G Pop7 POP7 homolog, ribonuclease P/MRP subunit involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:19,189,384...19,190,425
Ensembl chr12:19,189,138...19,190,674 		JBrowse link
G Prorp protein only RNase P catalytic subunit involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 6:72,669,659...72,762,419
Ensembl chr 6:72,670,847...72,762,416 		JBrowse link
G Rpp21 ribonuclease P/MRP subunit p21 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:2,018,170...2,020,100
Ensembl chr20:2,018,147...2,020,106 		JBrowse link
G Rpp30 ribonuclease P/MRP subunit p30 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:233,786,048...233,808,958
Ensembl chr 1:233,786,099...233,808,952 		JBrowse link
G Ssb small RNA binding exonuclease protection factor La involved_in IMP
IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000118
(PMID:17308035)		 GO_Central
TreeGrafter
RGD		 PMID:17308035 PMID:12049746 GO_REF:0000033 GO_REF:0000118, RGD:737671 NCBI chr 3:54,616,616...54,626,203
Ensembl chr 3:54,616,619...54,626,203 		JBrowse link
G Ssbl1 small RNA binding exonuclease protection factor La like 1 involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 4:149,078,162...149,079,669
Ensembl chr 4:149,078,162...149,079,657 		JBrowse link
G Thg1l tRNA-histidine guanylyltransferase 1-like involved_in ISO
IBA
ISS		 (PMID:21059936)
GO_REF:0000033
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:21059936 GO_REF:0000024 GO_REF:0000033 NCBI chr10:30,387,929...30,396,579
Ensembl chr10:30,387,940...30,396,687 		JBrowse link
G Tp53rka Tp53 tumor protein p53 regulating kinase A involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:154,219,672...154,224,841
Ensembl chr 3:154,220,851...154,224,328 		JBrowse link
G Tp53rkb tumor protein p53 regulating kinase B involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:155,529,298...155,532,662
Ensembl chr 3:155,529,298...155,532,728 		JBrowse link
G Tprkb Tp53rk binding protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:118,342,910...118,357,908
Ensembl chr 4:118,342,945...118,357,901 		JBrowse link
G Trmt11 tRNA methyltransferase 11 homolog involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:27,054,437...27,109,765
Ensembl chr 1:27,054,420...27,201,610 		JBrowse link
G Trmt1l tRNA methyltransferase 1-like involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr13:63,510,097...63,543,268
Ensembl chr13:63,510,204...63,543,266 		JBrowse link
G Trmu tRNA mitochondrial 2-thiouridylase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:116,969,750...116,987,704
Ensembl chr 7:116,969,756...116,986,355 		JBrowse link
G Trub2 TruB pseudouridine synthase family member 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:13,049,220...13,059,836
Ensembl chr 3:13,033,745...13,059,930 		JBrowse link
conversion of methionyl-tRNA to N-formyl-methionyl-tRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mtfmt mitochondrial methionyl-tRNA formyltransferase involved_in ISO
IBA
IEA
ISS		 (PMID:25288793)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
Ensembl
UniProt		 PMID:25288793 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:65,953,787...65,971,841
Ensembl chr 8:65,953,767...65,971,841 		JBrowse link
conversion of seryl-tRNAsec to selenocys-tRNAsec term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sepsecs Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr14:58,311,484...58,341,745
Ensembl chr14:58,311,499...58,341,740 		JBrowse link
mitochondrial mRNA polyadenylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:18083837) RGD PMID:18083837 NCBI chr14:102,877,553...102,908,696
Ensembl chr14:102,877,553...102,908,696 		JBrowse link
mitochondrial tRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elac2 elaC ribonuclease Z 2 involved_in ISS
IEA
ISO
IBA		 GO_REF:0000024
GO_REF:0000107
(PMID:21593607)
GO_REF:0000033		 UniProt
Ensembl
RGD
GO_Central		 PMID:21593607 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:49,632,308...49,655,614
Ensembl chr10:49,632,378...49,655,614 		JBrowse link
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:29040705)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:29040705 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:21,089,142...21,091,603
Ensembl chr  X:21,089,122...21,109,488 		JBrowse link
G LOC100911093 CCA tRNA nucleotidyltransferase 1, mitochondrial-like involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000118		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr 1:170,720,730...170,722,745
Ensembl chr 1:170,721,272...170,722,576 		JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO (PMID:29040705) RGD PMID:29040705 NCBI chr11:44,584,388...44,589,466
Ensembl chr11:44,584,113...44,589,568 		JBrowse link
G Trnt1 tRNA nucleotidyl transferase 1 involved_in ISO
IBA		 (PMID:11504732)
GO_REF:0000033		 RGD
GO_Central		 PMID:11504732 GO_REF:0000033 NCBI chr 4:139,681,115...139,703,611
Ensembl chr 4:139,680,858...139,703,611 		JBrowse link
mitochondrial tRNA 5'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:24549042), (PMID:25925575), (PMID:28888424), (PMID:29040705), (PMID:29880640)		 UniProt
Ensembl
RGD		 PMID:24549042 PMID:25925575 PMID:28888424 PMID:29040705 PMID:29880640 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:21,089,142...21,091,603
Ensembl chr  X:21,089,122...21,109,488 		JBrowse link
G Prorp protein only RNase P catalytic subunit involved_in ISS
IEA
IBA
ISO		 GO_REF:0000024
GO_REF:0000118
GO_REF:0000033
(PMID:25953853), (PMID:29880640)		 UniProt
TreeGrafter
GO_Central
RGD		 PMID:25953853 PMID:29880640 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 NCBI chr 6:72,669,659...72,762,419
Ensembl chr 6:72,670,847...72,762,416 		JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:29040705), (PMID:29880640)		 UniProt
GO_Central
RGD		 PMID:29040705 PMID:29880640 GO_REF:0000024 GO_REF:0000033 NCBI chr11:44,584,388...44,589,466
Ensembl chr11:44,584,113...44,589,568 		JBrowse link
mitochondrial tRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:23042678), (PMID:25925575), (PMID:28888424)		 UniProt
Ensembl
RGD		 PMID:23042678 PMID:25925575 PMID:28888424 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:21,089,142...21,091,603
Ensembl chr  X:21,089,122...21,109,488 		JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO (PMID:23042678) RGD PMID:23042678 NCBI chr11:44,584,388...44,589,466
Ensembl chr11:44,584,113...44,589,568 		JBrowse link
G Trmt5 tRNA methyltransferase 5 involved_in ISO
IBA		 (PMID:26189817)
GO_REF:0000033		 RGD
GO_Central		 PMID:26189817 GO_REF:0000033 NCBI chr 6:91,963,558...91,987,660
Ensembl chr 6:91,943,724...91,987,555 		JBrowse link
mitochondrial tRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 acts_upstream_of_or_within ISO MGI:5750452 (PMID:25738458) RGD PMID:25738458 NCBI chr 3:142,838,081...142,872,669
Ensembl chr 3:142,708,028...142,872,677 		JBrowse link
G Mettl8 methyltransferase 8, tRNA N3-cytidine involved_in ISO (PMID:34774131) RGD PMID:34774131 NCBI chr 3:55,731,453...55,863,652
Ensembl chr 3:55,770,167...55,863,676 		JBrowse link
G Trit1 tRNA isopentenyltransferase 1 involved_in ISO (PMID:34774131)
(PMID:24901367)		 RGD PMID:24901367 PMID:34774131 NCBI chr 5:135,293,472...135,341,522
Ensembl chr 5:135,295,330...135,338,764 		JBrowse link
mitochondrial tRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO
ISS		 (PMID:27132592)
GO_REF:0000024		 RGD
UniProt		 PMID:27132592 GO_REF:0000024 NCBI chr11:44,584,388...44,589,466
Ensembl chr11:44,584,113...44,589,568 		JBrowse link
mitochondrial tRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpusd4 RNA pseudouridine synthase D4 involved_in ISO (PMID:28082677) RGD PMID:28082677 NCBI chr 8:33,617,384...33,626,873
Ensembl chr 8:33,617,379...33,626,873 		JBrowse link
mitochondrial tRNA threonylcarbamoyladenosine modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osgepl1 O-sialoglycoprotein endopeptidase-like 1 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 9:48,214,995...48,229,440
Ensembl chr 9:48,215,402...48,229,388 		JBrowse link
mitochondrial tRNA wobble uridine modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mto1 mitochondrial tRNA translation optimization 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
SGD:S000003205 (PMID:14522080)		 GO_Central
RGD		 PMID:14522080 GO_REF:0000033 NCBI chr 8:79,309,681...79,335,231
Ensembl chr 8:79,309,982...79,335,231 		JBrowse link
regulation of translational initiation by tRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase involved_in ISO (PMID:27745969)
(MGI:6316585|PMID:27745969)		 RGD PMID:27745969 MGI:6316585 NCBI chr 6:107,068,301...107,088,784
Ensembl chr 6:107,068,475...107,088,759 		JBrowse link
regulation of tRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 AKT serine/threonine kinase 1 involved_in ISO
IEA		 (PMID:15861136)
GO_REF:0000107		 RGD
Ensembl		 PMID:15861136 GO_REF:0000107 NCBI chr 6:131,713,716...131,735,319
Ensembl chr 6:131,713,720...131,733,921 		JBrowse link
tRNA (guanine-N7)-methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl1 methyltransferase 1, tRNA methylguanosine involved_in ISO (PMID:36599982), (PMID:36599985), (PMID:37369656) RGD PMID:36599982 PMID:36599985 PMID:37369656 NCBI chr 7:62,864,860...62,869,202
Ensembl chr 7:62,864,853...62,869,202 		JBrowse link
G Wdr4 WD repeat domain 4 involved_in ISO (PMID:36599982), (PMID:36599985), (PMID:37369656) RGD PMID:36599982 PMID:36599985 PMID:37369656 NCBI chr20:9,587,205...9,611,434
Ensembl chr20:9,587,207...9,603,581 		JBrowse link
tRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elac1 elaC ribonuclease Z 1 involved_in ISO (PMID:32075755) RGD PMID:32075755 NCBI chr18:67,321,231...67,341,358
Ensembl chr18:67,323,583...67,340,936 		JBrowse link
G Elac2 elaC ribonuclease Z 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:49,632,308...49,655,614
Ensembl chr10:49,632,378...49,655,614 		JBrowse link
G Ptcd1 pentatricopeptide repeat domain 1 involved_in ISS
IBA
IEA		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000118		 UniProt
GO_Central
TreeGrafter		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 NCBI chr12:9,445,656...9,463,434
Ensembl chr12:9,445,714...9,463,508 		JBrowse link
G Ssb small RNA binding exonuclease protection factor La involved_in ISO UniProtKB:P87058 (PMID:10983981) RGD PMID:10983981 NCBI chr 3:54,616,616...54,626,203
Ensembl chr 3:54,616,619...54,626,203 		JBrowse link
tRNA 3'-terminal CCA addition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100911093 CCA tRNA nucleotidyltransferase 1, mitochondrial-like involved_in IEA
IBA		 GO_REF:0000117
GO_REF:0000033		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000117 NCBI chr 1:170,720,730...170,722,745
Ensembl chr 1:170,721,272...170,722,576 		JBrowse link
G Trnt1 tRNA nucleotidyl transferase 1 involved_in ISO
IBA		 (PMID:25193871), (PMID:25652405), (PMID:29454993), (PMID:30959222), (PMID:31011209), (PMID:32075755), (PMID:34023389)
GO_REF:0000033		 RGD
GO_Central		 PMID:25193871 PMID:25652405 PMID:29454993 PMID:30959222 PMID:31011209 More... GO_REF:0000033 NCBI chr 4:139,681,115...139,703,611
Ensembl chr 4:139,680,858...139,703,611 		JBrowse link
tRNA 5'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Thg1l tRNA-histidine guanylyltransferase 1-like involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:30,387,929...30,396,579
Ensembl chr10:30,387,940...30,396,687 		JBrowse link
tRNA 5'-leader removal term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pop1 POP1 homolog, ribonuclease P/MRP subunit involved_in ISO (PMID:16723659), (PMID:30454648) RGD PMID:16723659 PMID:30454648 NCBI chr 7:65,705,348...65,733,143
Ensembl chr 7:65,705,368...65,733,141 		JBrowse link
G Pop4 POP4 homolog, ribonuclease P/MRP subunit involved_in ISO
IEA
ISS		 (PMID:16723659), (PMID:30454648)
GO_REF:0000002
GO_REF:0000024		 RGD
InterPro
UniProt		 PMID:16723659 PMID:30454648 GO_REF:0000002 GO_REF:0000024 NCBI chr 1:90,960,026...90,968,360
Ensembl chr 1:90,960,022...90,968,443 		JBrowse link
G Pop5 POP5 homolog, ribonuclease P/MRP subunit involved_in ISO
IBA		 (PMID:16723659), (PMID:30454648)
GO_REF:0000033		 RGD
GO_Central		 PMID:16723659 PMID:30454648 GO_REF:0000033 NCBI chr12:41,376,755...41,384,882
Ensembl chr12:41,376,755...41,381,336 		JBrowse link
G Pop7 POP7 homolog, ribonuclease P/MRP subunit involved_in ISO (PMID:16723659), (PMID:30454648) RGD PMID:16723659 PMID:30454648 NCBI chr12:19,189,384...19,190,425
Ensembl chr12:19,189,138...19,190,674 		JBrowse link
G Prorp protein only RNase P catalytic subunit involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 6:72,669,659...72,762,419
Ensembl chr 6:72,670,847...72,762,416 		JBrowse link
G Rpp14 ribonuclease P/MRP subunit p14 involved_in ISO
IBA		 (PMID:16723659), (PMID:30454648)
GO_REF:0000033		 RGD
GO_Central		 PMID:16723659 PMID:30454648 GO_REF:0000033 NCBI chr15:16,837,796...16,847,970
Ensembl chr15:16,836,859...16,852,101
Ensembl chr15:16,836,859...16,852,101 		JBrowse link
G Rpp21 ribonuclease P/MRP subunit p21 involved_in ISO (PMID:16723659), (PMID:30454648) RGD PMID:16723659 PMID:30454648 NCBI chr20:2,018,170...2,020,100
Ensembl chr20:2,018,147...2,020,106 		JBrowse link
G Rpp25 ribonuclease P and MRP subunit p25 involved_in ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:16723659), (PMID:30454648)		 UniProt
GO_Central
RGD		 PMID:16723659 PMID:30454648 GO_REF:0000024 GO_REF:0000033 NCBI chr 8:57,907,352...57,908,732
Ensembl chr 8:57,907,352...57,908,732 		JBrowse link
G Rpp25l ribonuclease P/MRP subunit p25 like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:56,878,420...56,879,956
Ensembl chr 5:56,876,316...56,880,013 		JBrowse link
G Rpp30 ribonuclease P/MRP subunit p30 involved_in ISO (PMID:16723659), (PMID:30454648) RGD PMID:16723659 PMID:30454648 NCBI chr 1:233,786,048...233,808,958
Ensembl chr 1:233,786,099...233,808,952 		JBrowse link
G Rpp38 ribonuclease P/MRP subunit p38 involved_in ISO
IBA		 (PMID:30454648)
GO_REF:0000033		 RGD
GO_Central		 PMID:30454648 GO_REF:0000033 NCBI chr17:74,914,066...74,917,742
Ensembl chr17:74,908,932...74,927,431 		JBrowse link
G Rpp40 ribonuclease P/MRP subunit p40 involved_in ISO
IBA
IEA
ISS		 (PMID:30454648)
GO_REF:0000033
GO_REF:0000118
GO_REF:0000107
GO_REF:0000002
GO_REF:0000024		 RGD
GO_Central
TreeGrafter
Ensembl
InterPro
UniProt		 PMID:30454648 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr17:28,947,752...28,956,788
Ensembl chr17:28,947,734...28,956,788 		JBrowse link
G Ssb small RNA binding exonuclease protection factor La involved_in ISO UniProtKB:P87058 (PMID:10983981) RGD PMID:10983981 NCBI chr 3:54,616,616...54,626,203
Ensembl chr 3:54,616,619...54,626,203 		JBrowse link
tRNA acetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nat10 N-acetyltransferase 10 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 3:90,111,643...90,149,891
Ensembl chr 3:90,111,645...90,149,927 		JBrowse link
tRNA C3-cytosine methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dalrd3 DALR anticodon binding domain containing 3 involved_in ISO
IBA
IEA		 (PMID:32427860)
GO_REF:0000033
GO_REF:0000118		 RGD
GO_Central
TreeGrafter		 PMID:32427860 GO_REF:0000033 GO_REF:0000118 NCBI chr 8:109,264,100...109,268,560
Ensembl chr 8:109,265,676...109,268,568 		JBrowse link
G Mettl8 methyltransferase 8, tRNA N3-cytidine involved_in ISO (PMID:34774131), (PMID:35017528) RGD PMID:34774131 PMID:35017528 NCBI chr 3:55,731,453...55,863,652
Ensembl chr 3:55,770,167...55,863,676 		JBrowse link
tRNA C5-cytosine methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nsun6 NOP2/Sun RNA methyltransferase 6 involved_in ISO (PMID:26160102) RGD PMID:26160102 NCBI chr17:77,912,374...77,955,694
Ensembl chr17:77,912,377...77,950,006 		JBrowse link
tRNA dihydrouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dus1l dihydrouridine synthase 1-like involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000117
(PMID:34798057)		 UniProt
RGD		 PMID:34798057 GO_REF:0000024 GO_REF:0000117 NCBI chr10:106,055,519...106,062,656
Ensembl chr10:106,055,519...106,062,781 		JBrowse link
G Dus2 dihydrouridine synthase 2 involved_in ISO
IBA		 (PMID:26429968), (PMID:34798057)
GO_REF:0000033		 RGD
GO_Central		 PMID:26429968 PMID:34798057 GO_REF:0000033 NCBI chr19:33,906,517...33,954,922
Ensembl chr19:33,911,750...33,954,709 		JBrowse link
G Dus3l dihydrouridine synthase 3-like involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000117
(PMID:34556860), (PMID:34798057)		 UniProt
RGD		 PMID:34556860 PMID:34798057 GO_REF:0000024 GO_REF:0000117 NCBI chr 9:1,593,491...1,598,663
Ensembl chr 9:1,594,123...1,598,655 		JBrowse link
G Dus4l dihydrouridine synthase 4-like involved_in ISO (PMID:34798057) RGD PMID:34798057 NCBI chr 6:48,228,111...48,242,553
Ensembl chr 6:48,228,111...48,242,449 		JBrowse link
tRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh8 alkB homolog 8, tRNA methyltransferase involved_in ISO
IBA		 (PMID:20308323), (PMID:31079898)
GO_REF:0000033
(MGI:4461096|PMID:20123966)		 RGD
GO_Central		 PMID:20123966 PMID:20308323 PMID:31079898 GO_REF:0000033 MGI:4461096 NCBI chr 6:378,779...449,382
Ensembl chr 6:378,100...452,165 		JBrowse link
G Bcdin3d BCDIN3 domain containing RNA methyltransferase involved_in ISO
ISS		 (PMID:28119416), (PMID:31919512)
GO_REF:0000024		 RGD
UniProt		 PMID:28119416 PMID:31919512 GO_REF:0000024 NCBI chr 7:130,605,540...130,610,134
Ensembl chr 7:130,605,541...130,610,115 		JBrowse link
G ENSRNOG00000064902 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr  X:10,442,877...10,443,894 JBrowse link
G ENSRNOG00000065471 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr18:1,658,333...1,658,748 JBrowse link
G Ftsj1 FtsJ RNA 2'-O-methyltransferase 1 involved_in ISO
IBA		 UniProtKB:P38238 (PMID:25404562), (PMID:36720500)
GO_REF:0000033		 RGD
GO_Central		 PMID:25404562 PMID:36720500 GO_REF:0000033 NCBI chr  X:14,243,684...14,256,555
Ensembl chr  X:14,244,050...14,252,030 		JBrowse link
G Gtpbp3 GTP binding protein 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:18,175,766...18,180,857
Ensembl chr16:18,175,766...18,180,857 		JBrowse link
G Lcmt2 leucine carboxyl methyltransferase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:108,099,960...108,102,084
Ensembl chr 3:108,099,961...108,102,084 		JBrowse link
G Mettl1 methyltransferase 1, tRNA methylguanosine involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:62,864,860...62,869,202
Ensembl chr 7:62,864,853...62,869,202 		JBrowse link
G Mettl2 methyltransferase like 2 involved_in ISO MGI:5903740 (PMID:28655767)
(PMID:34268557)		 RGD PMID:28655767 PMID:34268557 NCBI chr10:90,095,527...90,109,354
Ensembl chr10:90,095,527...90,119,528 		JBrowse link
G Mettl6 methyltransferase 6, tRNA N3-cytidine involved_in ISO (PMID:32923617), (PMID:34268557), (PMID:34862464), (PMID:34922197)
MGI:5903741 (PMID:28655767)		 RGD PMID:28655767 PMID:32923617 PMID:34268557 PMID:34862464 PMID:34922197 NCBI chr16:6,683,820...6,699,013
Ensembl chr16:6,583,465...6,698,975 		JBrowse link
G Mto1 mitochondrial tRNA translation optimization 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:79,309,681...79,335,231
Ensembl chr 8:79,309,982...79,335,231 		JBrowse link
G Nop2 NOP2 nucleolar protein involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 4:157,932,731...157,944,462
Ensembl chr 4:157,932,716...157,944,459 		JBrowse link
G Nsun2 NOP2/Sun RNA methyltransferase 2 involved_in ISO
IBA		 (PMID:17071714), (PMID:31287866)
GO_REF:0000033
(MGI:5304206|PMID:22144916), (MGI:6194005|PMID:22885326), (MGI:6368097|PMID:31287866), (MGI:6368099|PMID:23871666), (MGI:6368109|PMID:31276587)		 RGD
GO_Central		 PMID:17071714 PMID:22144916 PMID:22885326 PMID:23871666 PMID:31276587 More... GO_REF:0000033 MGI:5304206 MGI:6194005 MGI:6368097 MGI:6368099 MGI:6368109 NCBI chr 1:33,662,139...33,685,887
Ensembl chr 1:33,662,139...33,685,862 		JBrowse link
G Nsun6 NOP2/Sun RNA methyltransferase 6 involved_in ISO (PMID:28531330) RGD PMID:28531330 NCBI chr17:77,912,374...77,955,694
Ensembl chr17:77,912,377...77,950,006 		JBrowse link
G Tarbp1 TAR (HIV-1) RNA binding protein 1 involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033
GO_REF:0000118		 InterPro
GO_Central
TreeGrafter		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr19:54,398,268...54,449,293
Ensembl chr19:54,398,253...54,449,261 		JBrowse link
G Thada THADA, armadillo repeat containing involved_in ISO
IBA		 UniProtKB:Q03496 (PMID:25404562)
GO_REF:0000033		 RGD
GO_Central		 PMID:25404562 GO_REF:0000033 NCBI chr 6:10,183,942...10,488,007
Ensembl chr 6:10,183,982...10,487,159 		JBrowse link
G Thumpd2 THUMP domain containing 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:13,924,742...13,976,657
Ensembl chr 6:13,924,765...13,976,657 		JBrowse link
G Thumpd3 THUMP domain containing 3 involved_in ISO
IBA		 (PMID:34669960)
GO_REF:0000033		 RGD
GO_Central		 PMID:34669960 GO_REF:0000033 NCBI chr 4:146,185,422...146,209,802
Ensembl chr 4:146,185,503...146,211,246 		JBrowse link
G Trdmt1 tRNA aspartic acid methyltransferase 1 involved_in
acts_upstream_of_or_within		 ISO
ISS		 (MGI:6194005|PMID:22885326)
MGI:3695409 (PMID:16424344)
GO_REF:0000024		 RGD
UniProt		 PMID:16424344 PMID:22885326 GO_REF:0000024 MGI:6194005 NCBI chr17:76,601,966...76,646,104
Ensembl chr17:76,610,543...76,645,439 		JBrowse link
G Trmo tRNA methyltransferase O involved_in ISS
ISO		 GO_REF:0000024
(PMID:25063302)		 UniProt
RGD		 PMID:25063302 GO_REF:0000024 NCBI chr 5:60,663,106...60,676,423
Ensembl chr 5:60,667,864...60,676,423 		JBrowse link
G Trmt10a tRNA methyltransferase 10A involved_in ISO
ISS		 (PMID:25053765)
GO_REF:0000024		 RGD
UniProt		 PMID:25053765 GO_REF:0000024 NCBI chr 2:226,669,445...226,684,166
Ensembl chr 2:226,669,832...226,684,151 		JBrowse link
G Trmt112 tRNA methyltransferase activator subunit 11-2 involved_in ISO (PMID:34669960) RGD PMID:34669960 NCBI chr 1:204,103,298...204,104,151 JBrowse link
G Trmt12 tRNA methyltransferase 12 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:90,417,846...90,419,472
Ensembl chr 7:90,417,862...90,419,867 		JBrowse link
G Trmt13 tRNA methyltransferase 13 homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:204,533,630...204,547,711
Ensembl chr 2:204,533,632...204,546,843 		JBrowse link
G Trmt44 tRNA methyltransferase 44 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:75,175,331...75,204,291
Ensembl chr14:75,182,029...75,200,147 		JBrowse link
G Trmt61a tRNA methyltransferase 61A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:130,737,230...130,743,251
Ensembl chr 6:130,737,219...130,743,243 		JBrowse link
G Trmt9b tRNA methyltransferase 9B (putative) involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:55,740,551...55,792,198
Ensembl chr16:55,743,018...55,792,144 		JBrowse link
G Tyw3 tRNA-yW synthesizing protein 3 homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:243,529,912...243,552,043
Ensembl chr 2:243,529,946...243,552,039 		JBrowse link
G Wdr6 WD repeat domain 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:109,268,079...109,274,504
Ensembl chr 8:109,268,079...109,274,499 		JBrowse link
tRNA methylthiolation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000118
GO_REF:0000108
MGI:5750452 (MGI:5635958|PMID:25738458)		 TreeGrafter
GOC
RGD		 PMID:25738458 GO_REF:0000108 GO_REF:0000118 MGI:5635958 NCBI chr 3:142,838,081...142,872,669
Ensembl chr 3:142,708,028...142,872,677 		JBrowse link
G Cdkal1 CDK5 regulatory subunit associated protein 1-like 1 acts_upstream_of_or_within ISO MGI:5301443 (PMID:21841312) RGD PMID:21841312 NCBI chr17:34,718,701...35,271,276
Ensembl chr17:34,718,687...35,407,524 		JBrowse link
G ENSRNOG00000064935 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 3:142,862,574...142,872,677 JBrowse link
tRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07005588.1 involved_in IEA GO_REF:0000002
GO_REF:0000118		 InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118
G Aars1 alanyl-tRNA synthetase 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
(PMID:16906134)
(MGI:5609717|PMID:25422440), (MGI:6159204|PMID:29769718)		 UniProt
RGD		 PMID:16906134 PMID:25422440 PMID:29769718 GO_REF:0000024 MGI:5609717 MGI:6159204 NCBI chr19:38,999,130...39,021,152
Ensembl chr19:38,999,163...39,021,147 		JBrowse link
G Ankrd16 ankyrin repeat domain 16 involved_in ISS
ISO		 GO_REF:0000024
(MGI:6159204|PMID:29769718)		 UniProt
RGD		 PMID:29769718 GO_REF:0000024 MGI:6159204 NCBI chr17:66,735,325...66,748,533
Ensembl chr17:66,737,261...66,748,533 		JBrowse link
G B3gntl1 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1 involved_in IDA
ISO		 PMID:37992713
(PMID:37992713)		 RGD PMID:37992713 PMID:37992713 RGD:401966881 NCBI chr10:106,870,237...106,933,723
Ensembl chr10:106,873,169...106,933,637 		JBrowse link
G Dtwd1 DTW domain containing 1 involved_in ISS
IBA
IEA
ISO		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000118
GO_REF:0000107
(PMID:31804502)		 UniProt
GO_Central
TreeGrafter
Ensembl
RGD		 PMID:31804502 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:113,392,402...113,409,322
Ensembl chr 3:113,392,457...113,408,105 		JBrowse link
G Dtwd2 DTW domain containing 2 involved_in ISO (PMID:31804502) RGD PMID:31804502 NCBI chr18:42,811,783...42,902,040
Ensembl chr18:42,816,681...42,901,832 		JBrowse link
G Elp5 elongator acetyltransferase complex subunit 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:54,692,526...54,704,255
Ensembl chr10:54,692,530...54,704,923 		JBrowse link
G Gtdc1 glycosyltransferase-like domain containing 1 involved_in IDA
ISO
IEA		 PMID:37992713
(PMID:37992713)
GO_REF:0000107		 RGD
Ensembl		 PMID:37992713 PMID:37992713 GO_REF:0000107, RGD:401966881 NCBI chr 3:28,766,640...29,161,668
Ensembl chr 3:28,766,645...29,162,271 		JBrowse link
G Mettl1 methyltransferase 1, tRNA methylguanosine involved_in ISO (PMID:12403464), (PMID:15861136) RGD PMID:12403464 PMID:15861136 NCBI chr 7:62,864,860...62,869,202
Ensembl chr 7:62,864,853...62,869,202 		JBrowse link
G Mettl2 methyltransferase like 2 involved_in ISO (PMID:34268557) RGD PMID:34268557 NCBI chr10:90,095,527...90,109,354
Ensembl chr10:90,095,527...90,119,528 		JBrowse link
G Mettl6 methyltransferase 6, tRNA N3-cytidine involved_in ISO (PMID:34268557) RGD PMID:34268557 NCBI chr16:6,683,820...6,699,013
Ensembl chr16:6,583,465...6,698,975 		JBrowse link
G Nsun6 NOP2/Sun RNA methyltransferase 6 involved_in ISO (PMID:37226891) RGD PMID:37226891 NCBI chr17:77,912,374...77,955,694
Ensembl chr17:77,912,377...77,950,006 		JBrowse link
G Osgep O-sialoglycoprotein endopeptidase involved_in ISO (PMID:28805828) RGD PMID:28805828 NCBI chr15:24,137,149...24,144,568
Ensembl chr15:24,137,153...24,144,568 		JBrowse link
G Sars1 seryl-tRNA synthetase 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:34268557)		 Ensembl
RGD		 PMID:34268557 GO_REF:0000107 NCBI chr 2:196,065,543...196,081,240
Ensembl chr 2:196,065,430...196,081,277 		JBrowse link
G Thg1l tRNA-histidine guanylyltransferase 1-like involved_in ISS
IEA		 GO_REF:0000024
GO_REF:0000104		 UniProt GO_REF:0000024 GO_REF:0000104 NCBI chr10:30,387,929...30,396,579
Ensembl chr10:30,387,940...30,396,687 		JBrowse link
G Thumpd1 THUMP domain containing 1 involved_in IEA GO_REF:0000002
GO_REF:0000118		 InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 1:174,078,875...174,084,915
Ensembl chr 1:174,078,878...174,084,937 		JBrowse link
G Trdmt1 tRNA aspartic acid methyltransferase 1 involved_in ISO (PMID:16424344) RGD PMID:16424344 NCBI chr17:76,601,966...76,646,104
Ensembl chr17:76,610,543...76,645,439 		JBrowse link
G Trit1 tRNA isopentenyltransferase 1 involved_in ISO
IBA		 (PMID:24126054)
GO_REF:0000033
(MGI:5476410|PMID:23289710)		 RGD
GO_Central		 PMID:23289710 PMID:24126054 GO_REF:0000033 MGI:5476410 NCBI chr 5:135,293,472...135,341,522
Ensembl chr 5:135,295,330...135,338,764 		JBrowse link
G Trub1 TruB pseudouridine synthase family member 1 involved_in ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:32926445)		 UniProt
GO_Central
RGD		 PMID:32926445 GO_REF:0000024 GO_REF:0000033 NCBI chr 1:256,513,418...256,554,549
Ensembl chr 1:256,515,562...256,552,814 		JBrowse link
G Wdr4 WD repeat domain 4 involved_in ISO
IBA		 (PMID:15861136)
GO_REF:0000033		 RGD
GO_Central		 PMID:15861136 GO_REF:0000033 NCBI chr20:9,587,205...9,611,434
Ensembl chr20:9,587,207...9,603,581 		JBrowse link
tRNA N1-guanine methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trmt10a tRNA methyltransferase 10A involved_in ISO
IEA
IBA		 (PMID:32392304)
GO_REF:0000118
GO_REF:0000033
GO_REF:0000107		 RGD
TreeGrafter
GO_Central
Ensembl		 PMID:32392304 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:226,669,445...226,684,166
Ensembl chr 2:226,669,832...226,684,151 		JBrowse link
G Trmt10b tRNA methyltransferase 10B involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000118		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr 5:59,548,845...59,572,529
Ensembl chr 5:59,548,869...59,572,526 		JBrowse link
G Trmt5 tRNA methyltransferase 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:91,963,558...91,987,660
Ensembl chr 6:91,943,724...91,987,555 		JBrowse link
tRNA N2-guanine methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trmt1 tRNA methyltransferase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:23,456,756...23,471,581
Ensembl chr19:23,456,756...23,466,956 		JBrowse link
G Trmt1l tRNA methyltransferase 1-like involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr13:63,510,097...63,543,268
Ensembl chr13:63,510,204...63,543,266 		JBrowse link
tRNA nucleoside ribose methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ftsj1 FtsJ RNA 2'-O-methyltransferase 1 involved_in ISO (PMID:26310293) RGD PMID:26310293 NCBI chr  X:14,243,684...14,256,555
Ensembl chr  X:14,244,050...14,252,030 		JBrowse link
G Thada THADA, armadillo repeat containing involved_in ISO UniProtKB:Q03496 (PMID:35559166) RGD PMID:35559166 NCBI chr 6:10,183,942...10,488,007
Ensembl chr 6:10,183,982...10,487,159 		JBrowse link
tRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pus1 pseudouridine synthase 1 involved_in
acts_upstream_of_or_within		 ISO
IBA
IEA		 (PMID:15772074)
(PMID:11027153), (PMID:11085940), (PMID:15327771)
GO_REF:0000033
GO_REF:0000117
(MGI:1928672|PMID:10094309), (MGI:5810940|PMID:27197761)		 RGD
GO_Central
UniProt		 PMID:10094309 PMID:11027153 PMID:11085940 PMID:15327771 PMID:15772074 More... GO_REF:0000033 GO_REF:0000117 MGI:1928672 MGI:5810940 NCBI chr12:45,880,364...45,889,196
Ensembl chr12:45,880,440...45,889,196 		JBrowse link
G Pus10 pseudouridine synthase 10 involved_in ISO
IBA		 (PMID:30530625), (PMID:31819270)
GO_REF:0000033		 RGD
GO_Central		 PMID:30530625 PMID:31819270 GO_REF:0000033 NCBI chr14:97,621,228...97,684,059
Ensembl chr14:97,621,391...97,684,046 		JBrowse link
G Pus3 pseudouridine synthase 3 involved_in
acts_upstream_of_or_within		 ISO
IBA		 (PMID:27055666)
(PMID:11027153)
GO_REF:0000033		 RGD
GO_Central		 PMID:11027153 PMID:27055666 GO_REF:0000033 NCBI chr 8:33,910,461...33,918,716
Ensembl chr 8:33,911,357...33,918,714 		JBrowse link
G Pus7 pseudouridine synthase 7 involved_in ISO (PMID:29628141), (PMID:34718722) RGD PMID:29628141 PMID:34718722 NCBI chr 4:11,360,169...11,401,139
Ensembl chr 4:11,360,188...11,401,172 		JBrowse link
G Pusl1 pseudouridine synthase like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:166,497,643...166,500,647
Ensembl chr 5:166,496,755...166,500,611 		JBrowse link
tRNA splicing, via endonucleolytic cleavage and ligation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 involved_in ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:17495927), (PMID:24766809), (PMID:24766810)		 UniProt
GO_Central
RGD		 PMID:17495927 PMID:24766809 PMID:24766810 GO_REF:0000024 GO_REF:0000033 NCBI chr 3:69,806,774...69,818,633
Ensembl chr 3:69,806,778...69,810,421 		JBrowse link
G Ddx1 DEAD-box helicase 1 involved_in ISO
ISS		 (PMID:24870230)
GO_REF:0000024		 RGD
UniProt		 PMID:24870230 GO_REF:0000024 NCBI chr 6:35,996,469...36,027,340
Ensembl chr 6:35,996,469...36,027,365 		JBrowse link
G Rtcb RNA 2',3'-cyclic phosphate and 5'-OH ligase involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000104
(PMID:21311021), (PMID:24870230)		 UniProt
RGD		 PMID:21311021 PMID:24870230 GO_REF:0000024 GO_REF:0000104 NCBI chr 7:17,907,668...17,927,136
Ensembl chr 7:17,907,705...17,927,132 		JBrowse link
G Rtraf RNA transcription, translation and transport factor involved_in ISO
IBA		 (PMID:24870230)
GO_REF:0000033		 RGD
GO_Central		 PMID:24870230 GO_REF:0000033 NCBI chr15:4,447,243...4,457,973
Ensembl chr15:4,442,573...4,457,972 		JBrowse link
G Rtraf-ps2 RNA transcription, translation and transport factor, pseudogene 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:39,745,222...39,791,427
Ensembl chr14:39,745,720...39,791,430 		JBrowse link
G Trpt1 tRNA phosphotransferase 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
(PMID:9826666)		 GO_Central
RGD		 PMID:9826666 GO_REF:0000033 NCBI chr 1:204,186,295...204,191,294
Ensembl chr 1:204,186,295...204,191,294 		JBrowse link
G Tsen15 tRNA splicing endonuclease subunit 15 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr13:64,490,216...64,505,591
Ensembl chr13:64,490,218...64,505,617 		JBrowse link
G Tsen2 tRNA splicing endonuclease subunit 2 involved_in ISO
IEA		 (PMID:17495927)
GO_REF:0000002		 RGD
InterPro		 PMID:17495927 GO_REF:0000002 NCBI chr 4:148,602,805...148,638,219
Ensembl chr 4:148,602,863...148,638,215 		JBrowse link
G Tsen54 tRNA splicing endonuclease subunit 54 involved_in ISO (PMID:17495927) RGD PMID:17495927 NCBI chr10:101,041,607...101,050,088
Ensembl chr10:101,042,503...101,050,087 		JBrowse link
G Zbtb8os zinc finger and BTB domain containing 8 opposite strand involved_in ISO
IBA		 (PMID:24870230)
GO_REF:0000033		 RGD
GO_Central		 PMID:24870230 GO_REF:0000033 NCBI chr 5:141,675,595...141,687,148
Ensembl chr 5:141,675,857...141,688,660 		JBrowse link
tRNA thio-modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctu1 cytosolic thiouridylase subunit 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:94,115,431...94,121,224
Ensembl chr 1:94,115,420...94,121,221 		JBrowse link
G Ctu2 cytosolic thiouridylase subunit 2 involved_in ISS
IEA		 GO_REF:0000024
GO_REF:0000104		 UniProt GO_REF:0000024 GO_REF:0000104 NCBI chr19:50,539,184...50,544,629
Ensembl chr19:50,539,352...50,544,623 		JBrowse link
G Mocs3 molybdenum cofactor synthesis 3 involved_in ISO (PMID:19017811), (PMID:30817134) RGD PMID:19017811 PMID:30817134 NCBI chr 3:156,939,763...156,941,723
Ensembl chr 3:156,939,809...156,941,890 		JBrowse link
G Urm1 ubiquitin related modifier 1 involved_in ISO (PMID:19017811) RGD PMID:19017811 NCBI chr 3:13,100,340...13,117,064
Ensembl chr 3:13,092,200...13,117,642
Ensembl chr 3:13,092,200...13,117,642 		JBrowse link
tRNA threonylcarbamoyladenosine modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gon7 GON7 subunit of KEOPS complex involved_in ISO (PMID:31481669) RGD PMID:31481669 NCBI chr 6:121,882,565...121,898,452
Ensembl chr 6:121,885,694...121,898,643
Ensembl chr 6:121,885,694...121,898,643 		JBrowse link
G Osgep O-sialoglycoprotein endopeptidase involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000104
(PMID:28805828), (PMID:31481669)		 UniProt
RGD		 PMID:28805828 PMID:31481669 GO_REF:0000024 GO_REF:0000104 NCBI chr15:24,137,149...24,144,568
Ensembl chr15:24,137,153...24,144,568 		JBrowse link
G Osgepl1 O-sialoglycoprotein endopeptidase-like 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000104
(PMID:29760464), (PMID:32047918)		 UniProt
RGD		 PMID:29760464 PMID:32047918 GO_REF:0000024 GO_REF:0000104 NCBI chr 9:48,214,995...48,229,440
Ensembl chr 9:48,215,402...48,229,388 		JBrowse link
G Tprkb Tp53rk binding protein involved_in ISO
IBA
IEA
ISS		 (PMID:28805828)
GO_REF:0000033
GO_REF:0000118
GO_REF:0000024		 RGD
GO_Central
TreeGrafter
UniProt		 PMID:28805828 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 NCBI chr 4:118,342,910...118,357,908
Ensembl chr 4:118,342,945...118,357,901 		JBrowse link
G Yrdc yrdC N(6)-threonylcarbamoyltransferase domain containing involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:29760464), (PMID:31481669), (PMID:34545459)		 UniProt
Ensembl
RGD		 PMID:29760464 PMID:31481669 PMID:34545459 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:137,110,244...137,115,127
Ensembl chr 5:137,110,279...137,115,120 		JBrowse link
tRNA wobble adenosine to inosine editing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adat2 adenosine deaminase, tRNA-specific 2 involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000118
GO_REF:0000033		 InterPro
TreeGrafter
GO_Central		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr 1:7,954,520...7,975,254
Ensembl chr 1:7,954,631...7,975,251 		JBrowse link
tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elp1 elongator acetyltransferase complex subunit 1 involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000118		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr 5:71,453,338...71,505,833
Ensembl chr 5:71,456,310...71,505,762 		JBrowse link
G Elp3 elongator acetyltransferase complex subunit 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:39,754,635...39,816,482
Ensembl chr15:39,754,632...39,816,445 		JBrowse link
tRNA wobble base cytosine methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nsun3 NOP2/Sun RNA methyltransferase 3 involved_in ISO (PMID:27214402), (PMID:27356879), (PMID:27497299) RGD PMID:27214402 PMID:27356879 PMID:27497299 NCBI chr11:37,490,832...37,575,607
Ensembl chr11:37,490,838...37,568,543 		JBrowse link
tRNA wobble cytosine modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase involved_in ISO (PMID:27497299) RGD PMID:27497299 NCBI chr 6:107,068,301...107,088,784
Ensembl chr 6:107,068,475...107,088,759 		JBrowse link
G Nat10 N-acetyltransferase 10 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 3:90,111,643...90,149,891
Ensembl chr 3:90,111,645...90,149,927 		JBrowse link
tRNA wobble position uridine thiolation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctu1 cytosolic thiouridylase subunit 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:94,115,431...94,121,224
Ensembl chr 1:94,115,420...94,121,221 		JBrowse link
G Ctu2 cytosolic thiouridylase subunit 2 involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000118		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr19:50,539,184...50,544,629
Ensembl chr19:50,539,352...50,544,623 		JBrowse link
G Mocs3 molybdenum cofactor synthesis 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:156,939,763...156,941,723
Ensembl chr 3:156,939,809...156,941,890 		JBrowse link
G Trmu tRNA mitochondrial 2-thiouridylase involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000118		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr 7:116,969,750...116,987,704
Ensembl chr 7:116,969,756...116,986,355 		JBrowse link
tRNA wobble uridine modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh8 alkB homolog 8, tRNA methyltransferase involved_in ISO
IBA		 (PMID:21285950), (PMID:31079898)
GO_REF:0000033
(MGI:5607402|PMID:20583019)		 RGD
GO_Central		 PMID:20583019 PMID:21285950 PMID:31079898 GO_REF:0000033 MGI:5607402 NCBI chr 6:378,779...449,382
Ensembl chr 6:378,100...452,165 		JBrowse link
G Ctu1 cytosolic thiouridylase subunit 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:94,115,431...94,121,224
Ensembl chr 1:94,115,420...94,121,221 		JBrowse link
G Ctu2 cytosolic thiouridylase subunit 2 involved_in ISS
IEA		 GO_REF:0000024
GO_REF:0000104		 UniProt GO_REF:0000024 GO_REF:0000104 NCBI chr19:50,539,184...50,544,629
Ensembl chr19:50,539,352...50,544,623 		JBrowse link
G Elp1 elongator acetyltransferase complex subunit 1 involved_in ISO
IEA		 (MGI:5506828|PMID:23717213)
GO_REF:0000107		 RGD
Ensembl		 PMID:23717213 GO_REF:0000107 MGI:5506828 NCBI chr 5:71,453,338...71,505,833
Ensembl chr 5:71,456,310...71,505,762 		JBrowse link
G Elp2 elongator acetyltransferase complex subunit 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:15,885,940...15,921,564
Ensembl chr18:15,885,934...15,921,599 		JBrowse link
G Elp3 elongator acetyltransferase complex subunit 3 involved_in ISO (PMID:29415125) RGD PMID:29415125 NCBI chr15:39,754,635...39,816,482
Ensembl chr15:39,754,632...39,816,445 		JBrowse link
G Elp4 elongator acetyltransferase complex subunit 4 involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033
GO_REF:0000118		 InterPro
GO_Central
TreeGrafter		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr 3:92,162,271...92,385,251
Ensembl chr 3:92,162,280...92,385,243 		JBrowse link
G Elp4-ps1 elongator acetyltransferase complex subunit 4, pseudogene 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:172,729,315...172,730,773
Ensembl chr 2:172,728,560...172,730,748 		JBrowse link
G Elp5 elongator acetyltransferase complex subunit 5 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:54,692,526...54,704,255
Ensembl chr10:54,692,530...54,704,923 		JBrowse link
G Elp6 elongator acetyltransferase complex subunit 6 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:110,280,059...110,295,070
Ensembl chr 8:110,279,979...110,295,067 		JBrowse link
G Gtpbp3 GTP binding protein 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:18,175,766...18,180,857
Ensembl chr16:18,175,766...18,180,857 		JBrowse link
G Kti12 KTI12 chromatin associated involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 5:123,601,059...123,602,581
Ensembl chr 5:123,599,436...123,613,964 		JBrowse link
G Mocs3 molybdenum cofactor synthesis 3 involved_in ISO (PMID:19017811) RGD PMID:19017811 NCBI chr 3:156,939,763...156,941,723
Ensembl chr 3:156,939,809...156,941,890 		JBrowse link
G Mto1 mitochondrial tRNA translation optimization 1 acts_upstream_of_or_within ISO SGD:S000003205 (PMID:14522080) RGD PMID:14522080 NCBI chr 8:79,309,681...79,335,231
Ensembl chr 8:79,309,982...79,335,231 		JBrowse link
G Trmt9b tRNA methyltransferase 9B (putative) involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:55,740,551...55,792,198
Ensembl chr16:55,743,018...55,792,144 		JBrowse link
G Urm1 ubiquitin related modifier 1 involved_in ISO (PMID:19017811) RGD PMID:19017811 NCBI chr 3:13,100,340...13,117,064
Ensembl chr 3:13,092,200...13,117,642
Ensembl chr 3:13,092,200...13,117,642 		JBrowse link
tRNA-guanine transglycosylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Qng1 Q-nucleotide N-glycosylase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:6,281,377...6,288,976
Ensembl chr17:6,281,400...6,288,975 		JBrowse link
G Qtrt1 queuine tRNA-ribosyltransferase catalytic subunit 1 involved_in IEA
IBA
ISO		 GO_REF:0000117
GO_REF:0000033
(MGI:3850292|PMID:19414587), (MGI:7565917|PMID:35815944)
(PMID:20354154), (PMID:34241577)		 UniProt
GO_Central
RGD		 PMID:19414587 PMID:20354154 PMID:34241577 PMID:35815944 GO_REF:0000033 GO_REF:0000117 MGI:3850292 MGI:7565917 NCBI chr 8:19,965,801...19,973,843
Ensembl chr 8:19,966,336...19,973,837 		JBrowse link
G Qtrt2 queuine tRNA-ribosyltransferase accessory subunit 2 involved_in ISO
IBA		 (PMID:20354154), (PMID:34241577)
GO_REF:0000033
(MGI:3850292|PMID:19414587), (MGI:7565917|PMID:35815944)		 RGD
GO_Central		 PMID:19414587 PMID:20354154 PMID:34241577 PMID:35815944 GO_REF:0000033 MGI:3850292 MGI:7565917 NCBI chr11:56,806,417...56,837,239
Ensembl chr11:56,806,385...56,837,228 		JBrowse link
tRNA-type intron splice site recognition and cleavage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tsen2 tRNA splicing endonuclease subunit 2 involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 4:148,602,805...148,638,219
Ensembl chr 4:148,602,863...148,638,215 		JBrowse link
G Tsen34 tRNA splicing endonuclease subunit 34 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:65,517,324...65,525,194
Ensembl chr 1:65,517,330...65,524,412 		JBrowse link
G Tsen54 tRNA splicing endonuclease subunit 54 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:101,041,607...101,050,088
Ensembl chr10:101,042,503...101,050,087 		JBrowse link
wobble position ribose methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ftsj1 FtsJ RNA 2'-O-methyltransferase 1 involved_in ISO (PMID:32558197) RGD PMID:32558197 NCBI chr  X:14,243,684...14,256,555
Ensembl chr  X:14,244,050...14,252,030 		JBrowse link
G Wdr6 WD repeat domain 6 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:32558197)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:32558197 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:109,268,079...109,274,504
Ensembl chr 8:109,268,079...109,274,499 		JBrowse link
wybutosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Jmjd7 jumonji domain containing 7 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 3:106,998,454...107,004,538
Ensembl chr 3:106,998,477...107,004,538 		JBrowse link
G Kdm8 lysine demethylase 8 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 1:180,013,969...180,028,829
Ensembl chr 1:180,020,656...180,028,841 		JBrowse link
G Lcmt2 leucine carboxyl methyltransferase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:108,099,960...108,102,084
Ensembl chr 3:108,099,961...108,102,084 		JBrowse link
G Trmt12 tRNA methyltransferase 12 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:90,417,846...90,419,472
Ensembl chr 7:90,417,862...90,419,867 		JBrowse link
G Tyw1 tRNA-yW synthesizing protein 1 homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:26,332,020...26,418,286
Ensembl chr12:26,330,351...26,418,208 		JBrowse link
G Tyw3 tRNA-yW synthesizing protein 3 homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:243,529,912...243,552,043
Ensembl chr 2:243,529,946...243,552,039 		JBrowse link
G Tyw5 tRNA-yW synthesizing protein 5 involved_in ISO
IBA		 (PMID:20739293), (PMID:20972222)
GO_REF:0000033		 RGD
GO_Central		 PMID:20739293 PMID:20972222 GO_REF:0000033 NCBI chr 9:58,961,100...58,979,188
Ensembl chr 9:58,961,106...58,979,188 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20413
    metabolic process 11835
      organic substance metabolic process 11328
        macromolecule metabolic process 9578
          nucleic acid metabolic process 5144
            nucleic acid catabolic process 842
              tRNA processing 135
                mitochondrial tRNA processing + 14
                negative regulation of tRNA processing 0
                positive regulation of tRNA processing + 0
                regulation of tRNA processing + 1
                tRNA 3'-end processing + 8
                tRNA 5'-end processing + 16
                tRNA modification + 95
                tRNA splicing, via endonucleolytic cleavage and ligation + 11
Path 2
Term Annotations click to browse term
  biological_process 20413
    metabolic process 11835
      organic substance metabolic process 11328
        organic cyclic compound metabolic process 6260
          nucleobase-containing compound metabolic process 5743
            nucleic acid metabolic process 5144
              RNA metabolic process 4542
                ncRNA metabolic process 652
                  tRNA metabolic process 207
                    tRNA processing 135
                      mitochondrial tRNA processing + 14
                      negative regulation of tRNA processing 0
                      positive regulation of tRNA processing + 0
                      regulation of tRNA processing + 1
                      tRNA 3'-end processing + 8
                      tRNA 5'-end processing + 16
                      tRNA modification + 95
                      tRNA splicing, via endonucleolytic cleavage and ligation + 11
paths to the root