Rps27 (ribosomal protein S27) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Rps27 (ribosomal protein S27) Chinchilla lanigera
Analyze
Symbol: Rps27
Name: ribosomal protein S27
RGD ID: 8727959
Description: ENCODES a protein that exhibits structural constituent of ribosome (ortholog); INVOLVED IN ribosomal small subunit biogenesis (ortholog); rRNA processing (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Diamond-Blackfan anemia 17 (ortholog); GAND syndrome (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cytosolic ribosome (ortholog); cytosolic small ribosomal subunit (ortholog); GABA-ergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S27
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955545599,762 - 601,399 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955545599,762 - 601,399 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rps27
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955545599,762 - 601,399 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955545599,762 - 601,399 (+)NCBIChiLan1.0ChiLan1.0
RPS27
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381153,990,762 - 153,992,155 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1153,990,762 - 153,992,155 (+)EnsemblGRCh38hg38GRCh38
GRCh371153,963,238 - 153,964,631 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361152,229,853 - 152,231,250 (+)NCBINCBI36Build 36hg18NCBI36
Build 341150,776,310 - 150,777,696NCBI
Celera1127,034,985 - 127,036,377 (+)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1125,325,793 - 125,327,185 (+)NCBIHuRef
CHM1_11155,359,556 - 155,360,948 (+)NCBICHM1_1
T2T-CHM13v2.01153,128,025 - 153,129,418 (+)NCBIT2T-CHM13v2.0
Rps27rt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399114,811,434 - 114,811,807 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9114,811,434 - 114,811,807 (-)EnsemblGRCm39 Ensembl
GRCm389114,982,366 - 114,982,739 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9114,982,366 - 114,982,739 (-)EnsemblGRCm38mm10GRCm38
MGSCv379114,891,484 - 114,891,857 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369114,891,475 - 114,891,863 (-)NCBIMGSCv36mm8
Celera9115,465,871 - 115,466,243 (-)NCBICelera
Cytogenetic Map9F3NCBI
cM Map966.07NCBI
Rps27
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82177,963,499 - 177,964,708 (-)NCBIGRCr8
mRatBN7.22175,665,858 - 175,666,963 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2175,665,853 - 175,666,964 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2182,805,784 - 182,806,889 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02180,828,170 - 180,829,275 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02175,428,365 - 175,429,470 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02189,572,175 - 189,573,280 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2189,572,176 - 189,573,280 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02209,004,972 - 209,006,077 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42182,451,529 - 182,452,634 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12182,401,634 - 182,402,740 (-)NCBI
Celera2169,601,903 - 169,603,008 (-)NCBICelera
Cytogenetic Map2q34NCBI
RPS27
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2195,840,032 - 95,841,498 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1195,575,283 - 95,576,683 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01129,347,650 - 129,349,050 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11132,975,795 - 132,977,192 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,975,795 - 132,977,192 (+)Ensemblpanpan1.1panPan2
RPS27
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1743,149,465 - 43,150,658 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl743,067,161 - 43,309,293 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,639,814 - 42,641,007 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0743,019,841 - 43,021,036 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl743,019,842 - 43,179,275 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1742,798,507 - 42,799,696 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0742,851,677 - 42,852,863 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0743,136,022 - 43,137,215 (-)NCBIUU_Cfam_GSD_1.0
Rps27
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505824,709,637 - 24,710,958 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365803,740,088 - 3,741,343 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100525613
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11516,129,525 - 16,129,806 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21518,520,762 - 18,521,870 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPS27
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1209,821,812 - 9,823,267 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660389,189,543 - 9,190,975 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps27
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248853,234,339 - 3,235,747 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248853,234,338 - 3,235,747 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000009961   ⟹   ENSCLAP00000009832
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955545599,762 - 601,399 (+)Ensembl
RefSeq Acc Id: XM_005411466   ⟹   XP_005411523
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955545599,762 - 601,399 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005411523 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000009832
  ENSCLAP00000009832.1
Reference Protein Sequences
RefSeq Acc Id: XP_005411523   ⟸   XM_005411466
- UniProtKB: A0A8C2V4Z0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000009832   ⟸   ENSCLAT00000009961


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006809 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000009961 ENTREZGENE
  ENSCLAT00000009961.1 UniProtKB/TrEMBL
Gene3D-CATH 2.20.25.100 UniProtKB/TrEMBL
InterPro Ribosomal_S27 UniProtKB/TrEMBL
  Ribosomal_S27_Zn-bd_dom_sf UniProtKB/TrEMBL
  Ribosomal_zn-bd UniProtKB/TrEMBL
NCBI Gene Rps27 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S27 UniProtKB/TrEMBL
  PTHR11594 UniProtKB/TrEMBL
Pfam Ribosomal_S27e UniProtKB/TrEMBL
PROSITE RIBOSOMAL_S27E UniProtKB/TrEMBL
Superfamily-SCOP SSF57829 UniProtKB/TrEMBL
UniProt A0A8C2V4Z0 ENTREZGENE, UniProtKB/TrEMBL