Psip1 (PC4 and SRSF1 interacting protein 1) - Rat Genome Database

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Gene: Psip1 (PC4 and SRSF1 interacting protein 1) Chinchilla lanigera
Analyze
Symbol: Psip1
Name: PC4 and SRSF1 interacting protein 1
RGD ID: 8851991
Description: ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription factor binding (ortholog); supercoiled DNA binding (ortholog); INVOLVED IN mRNA 5'-splice site recognition (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); response to heat (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); FOUND IN euchromatin (ortholog); heterochromatin (ortholog); nuclear periphery (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: PC4 and SFRS1 interacting protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543418,312,646 - 18,357,761 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543418,312,646 - 18,357,753 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Psip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543418,312,646 - 18,357,761 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543418,312,646 - 18,357,753 (-)NCBIChiLan1.0ChiLan1.0
PSIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38915,464,066 - 15,510,970 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl915,464,066 - 15,510,995 (-)EnsemblGRCh38hg38GRCh38
GRCh37915,464,064 - 15,510,968 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36915,454,064 - 15,500,982 (-)NCBINCBI36Build 36hg18NCBI36
Build 34915,454,065 - 15,500,982NCBI
Celera915,397,404 - 15,444,340 (-)NCBICelera
Cytogenetic Map9p22.3NCBI
HuRef915,427,681 - 15,474,611 (-)NCBIHuRef
CHM1_1915,464,652 - 15,511,590 (-)NCBICHM1_1
T2T-CHM13v2.0915,475,998 - 15,522,882 (-)NCBIT2T-CHM13v2.0
Psip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39483,373,917 - 83,404,700 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl483,373,917 - 83,404,696 (-)EnsemblGRCm39 Ensembl
GRCm38483,455,680 - 83,486,463 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl483,455,680 - 83,486,459 (-)EnsemblGRCm38mm10GRCm38
MGSCv37483,101,584 - 83,132,294 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36482,926,911 - 82,957,621 (-)NCBIMGSCv36mm8
Celera481,990,132 - 82,020,322 (-)NCBICelera
Cytogenetic Map4C3NCBI
cM Map439.46NCBI
Psip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85102,892,929 - 102,925,191 (-)NCBIGRCr8
mRatBN7.2597,847,010 - 97,879,280 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl597,847,015 - 97,879,257 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5100,239,507 - 100,270,774 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05102,032,078 - 102,063,318 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05102,050,380 - 102,081,647 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05101,555,691 - 101,588,659 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5101,555,694 - 101,588,598 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05105,568,304 - 105,601,260 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45102,304,948 - 102,336,608 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15102,310,173 - 102,341,834 (-)NCBI
Celera596,399,960 - 96,431,195 (-)NCBICelera
Cytogenetic Map5q31NCBI
PSIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211109,043,050 - 109,090,002 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19109,049,057 - 109,095,949 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0915,280,947 - 15,327,897 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1915,784,740 - 15,831,449 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl915,784,740 - 15,831,449 (-)Ensemblpanpan1.1panPan2
PSIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11135,746,064 - 35,788,473 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1135,747,341 - 35,789,110 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1134,390,775 - 34,437,103 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01136,648,900 - 36,657,415 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11135,350,549 - 35,396,865 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01135,141,417 - 35,187,689 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01135,799,567 - 35,846,055 (-)NCBIUU_Cfam_GSD_1.0
Psip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947150,438,959 - 150,488,118 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365398,892,841 - 8,940,871 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365398,894,285 - 8,940,831 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1207,173,540 - 207,214,773 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11207,173,264 - 207,216,437 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21230,981,479 - 231,024,777 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PSIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11264,086,611 - 64,137,298 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1264,087,189 - 64,140,661 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603852,279,543 - 52,330,223 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Psip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473619,618,417 - 19,665,896 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000020321   ⟹   ENSCLAP00000020126
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543418,312,646 - 18,357,761 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000020322   ⟹   ENSCLAP00000020127
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543418,318,953 - 18,357,761 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000020323   ⟹   ENSCLAP00000020128
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543418,319,600 - 18,357,761 (-)Ensembl
RefSeq Acc Id: XM_005388709   ⟹   XP_005388766
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543418,312,646 - 18,357,753 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005388710   ⟹   XP_005388767
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543418,318,944 - 18,357,753 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005388766 (Get FASTA)   NCBI Sequence Viewer  
  XP_005388767 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000020126
  ENSCLAP00000020126.1
  ENSCLAP00000020127
  ENSCLAP00000020127.1
  ENSCLAP00000020128.1
RefSeq Acc Id: XP_005388766   ⟸   XM_005388709
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VST4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005388767   ⟸   XM_005388710
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VST7 (UniProtKB/TrEMBL),   A0A8C2VT41 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000020128   ⟸   ENSCLAT00000020323
Ensembl Acc Id: ENSCLAP00000020126   ⟸   ENSCLAT00000020321
Ensembl Acc Id: ENSCLAP00000020127   ⟸   ENSCLAT00000020322
Protein Domains
PWWP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000013790 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000020321 ENTREZGENE
  ENSCLAT00000020321.1 UniProtKB/TrEMBL
  ENSCLAT00000020322 ENTREZGENE
  ENSCLAT00000020322.1 UniProtKB/TrEMBL
  ENSCLAT00000020323.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.930.10 UniProtKB/TrEMBL
  2.30.30.140 UniProtKB/TrEMBL
InterPro HIVI-bd_sf UniProtKB/TrEMBL
  LEDGF_IBD UniProtKB/TrEMBL
  PWWP_dom UniProtKB/TrEMBL
  TFIIS/LEDGF_dom_sf UniProtKB/TrEMBL
NCBI Gene Psip1 ENTREZGENE
PANTHER HEPATOMA-DERIVED GROWTH FACTOR-RELATED UniProtKB/TrEMBL
  PC4 AND SFRS1-INTERACTING PROTEIN UniProtKB/TrEMBL
Pfam LEDGF UniProtKB/TrEMBL
  PWWP UniProtKB/TrEMBL
PRINTS TREACLE UniProtKB/TrEMBL
PROSITE PWWP UniProtKB/TrEMBL
SMART PWWP UniProtKB/TrEMBL
Superfamily-SCOP SSF140576 UniProtKB/TrEMBL
  Tudor/PWWP/MBT UniProtKB/TrEMBL
UniProt A0A8C2VST4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VST7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VT41 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-10-04 Psip1  PC4 and SRSF1 interacting protein 1  Psip1  PC4 and SFRS1 interacting protein 1  Symbol and/or name change 5135510 APPROVED