Hmx2 (H6 family homeobox 2) - Rat Genome Database

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Gene: Hmx2 (H6 family homeobox 2) Chinchilla lanigera
Analyze
Symbol: Hmx2
Name: H6 family homeobox 2
RGD ID: 8956187
Description: ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN brain development (ortholog); cell population proliferation (ortholog); epithelial cell proliferation (ortholog); ASSOCIATED WITH High Myopia (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: homeobox protein HMX2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554771,294,472 - 1,302,505 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554771,294,479 - 1,302,433 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
High Myopia  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Hmx2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554771,294,472 - 1,302,505 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554771,294,479 - 1,302,433 (+)NCBIChiLan1.0ChiLan1.0
HMX2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810123,148,136 - 123,150,672 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10123,148,136 - 123,150,672 (+)EnsemblGRCh38hg38GRCh38
GRCh3710124,907,652 - 124,910,188 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610124,897,628 - 124,900,178 (+)NCBINCBI36Build 36hg18NCBI36
Celera10118,614,169 - 118,616,719 (+)NCBICelera
Cytogenetic Map10q26.13NCBI
HuRef10118,525,408 - 118,527,978 (+)NCBIHuRef
CHM1_110125,189,354 - 125,191,904 (+)NCBICHM1_1
T2T-CHM13v2.010124,023,154 - 124,025,690 (+)NCBIT2T-CHM13v2.0
Hmx2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397131,150,486 - 131,159,743 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7131,150,502 - 131,159,743 (+)EnsemblGRCm39 Ensembl
GRCm387131,548,757 - 131,558,014 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7131,548,773 - 131,558,014 (+)EnsemblGRCm38mm10GRCm38
MGSCv377138,697,576 - 138,700,096 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367131,339,921 - 131,347,272 (+)NCBIMGSCv36mm8
Celera7131,359,572 - 131,362,092 (+)NCBICelera
Cytogenetic Map7F3NCBI
cM Map774.34NCBI
Hmx2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81195,749,284 - 195,758,347 (+)NCBIGRCr8
mRatBN7.21186,319,110 - 186,326,771 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1186,319,110 - 186,326,771 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1194,669,263 - 194,676,924 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01201,846,872 - 201,854,533 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01194,519,959 - 194,527,620 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01203,515,605 - 203,523,266 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1203,515,609 - 203,523,358 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01210,526,870 - 210,534,573 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41191,117,643 - 191,125,304 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1184,073,654 - 184,081,315 (+)NCBICelera
Cytogenetic Map1q41NCBI
HMX2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28134,993,103 - 134,995,377 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110134,998,454 - 135,000,728 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010119,700,416 - 119,708,444 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
HMX2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12832,679,585 - 32,687,972 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2832,679,579 - 32,687,982 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2832,744,958 - 32,752,886 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02833,236,182 - 33,244,109 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2833,236,196 - 33,244,546 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12832,793,306 - 32,801,218 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02832,785,467 - 32,793,383 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02833,035,343 - 33,043,264 (+)NCBIUU_Cfam_GSD_1.0
Hmx2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721313,768,795 - 13,772,436 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648611,789,991 - 11,792,068 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648611,789,991 - 11,792,500 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HMX2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14132,696,380 - 132,699,544 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114132,691,108 - 132,699,477 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214144,283,993 - 144,285,818 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HMX2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19115,818,448 - 115,825,664 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9115,819,760 - 115,821,508 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604877,128,290 - 77,130,657 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hmx2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473723,861,756 - 23,871,804 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473723,862,661 - 23,871,723 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000007461   ⟹   ENSCLAP00000007344
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554771,294,472 - 1,302,505 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000007462   ⟹   ENSCLAP00000007345
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554771,299,568 - 1,302,505 (+)Ensembl
RefSeq Acc Id: XM_005401958   ⟹   XP_005402015
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554771,294,479 - 1,302,433 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005401959   ⟹   XP_005402016
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554771,299,568 - 1,302,433 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005402015 (Get FASTA)   NCBI Sequence Viewer  
  XP_005402016 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000007344
  ENSCLAP00000007344.1
  ENSCLAP00000007345
  ENSCLAP00000007345.1
RefSeq Acc Id: XP_005402015   ⟸   XM_005401958
- UniProtKB: A0A8C2UYR6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005402016   ⟸   XM_005401959
- UniProtKB: A0A8C2UYR6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000007345   ⟸   ENSCLAT00000007462
Ensembl Acc Id: ENSCLAP00000007344   ⟸   ENSCLAT00000007461
Protein Domains
Homeobox


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005166 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000007461 ENTREZGENE
  ENSCLAT00000007461.1 UniProtKB/TrEMBL
  ENSCLAT00000007462 ENTREZGENE
  ENSCLAT00000007462.1 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
InterPro HMX_Homeobox_TF UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  Homeobox_metazoa UniProtKB/TrEMBL
NCBI Gene Hmx2 ENTREZGENE
PANTHER HOMEOBOX PROTEIN HMX UniProtKB/TrEMBL
  HOMEOBOX PROTEIN HMX2 UniProtKB/TrEMBL
Pfam Homeodomain UniProtKB/TrEMBL
PRINTS HOMEOBOX UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0A8C2UYR6 ENTREZGENE, UniProtKB/TrEMBL