Rtcb (RNA 2',3'-cyclic phosphate and 5'-OH ligase) - Rat Genome Database

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Gene: Rtcb (RNA 2',3'-cyclic phosphate and 5'-OH ligase) Chinchilla lanigera
Analyze
Symbol: Rtcb
Name: RNA 2',3'-cyclic phosphate and 5'-OH ligase
RGD ID: 8995426
Description: ENCODES a protein that exhibits RNA ligase (ATP) activity (ortholog); vinculin binding (ortholog); INVOLVED IN in utero embryonic development (ortholog); placenta development (ortholog); tRNA splicing, via endonucleolytic cleavage and ligation (ortholog); PARTICIPATES IN tRNA maturation pathway; ASSOCIATED WITH muscular dystrophy-dystroglycanopathy type B6 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tRNA-splicing ligase RtcB homolog
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540541,360,370 - 41,375,215 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540541,360,370 - 41,375,215 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Rtcb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540541,360,370 - 41,375,215 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540541,360,370 - 41,375,215 (-)NCBIChiLan1.0ChiLan1.0
RTCB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382232,387,582 - 32,412,247 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2232,387,582 - 32,412,248 (-)EnsemblGRCh38hg38GRCh38
GRCh372232,783,569 - 32,808,234 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362231,113,569 - 31,138,235 (-)NCBINCBI36hg18NCBI36
Celera2216,585,734 - 16,610,445 (-)NCBI
Cytogenetic Map22q12.3NCBI
HuRef2215,740,893 - 15,765,605 (-)NCBIHuRef
CHM1_12232,742,920 - 32,767,632 (-)NCBICHM1_1
T2T-CHM13v2.02232,851,498 - 32,876,163 (-)NCBI
Rtcb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391085,774,501 - 85,793,657 (-)NCBIGRCm39mm39
GRCm39 Ensembl1085,774,501 - 85,793,687 (-)Ensembl
GRCm381085,938,637 - 85,957,793 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1085,938,637 - 85,957,823 (-)EnsemblGRCm38mm10GRCm38
MGSCv371085,401,382 - 85,420,538 (-)NCBIGRCm37mm9NCBIm37
MGSCv361085,368,436 - 85,387,592 (-)NCBImm8
Celera1087,913,234 - 87,932,391 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1041.81NCBI
Rtcb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2717,907,786 - 17,927,134 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl717,907,705 - 17,927,132 (+)Ensembl
Rnor_6.0723,913,830 - 23,933,191 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl723,913,830 - 23,933,191 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0724,063,354 - 24,082,716 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4720,045,978 - 20,065,340 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1720,059,163 - 20,079,411 (+)NCBI
Celera715,140,132 - 15,159,379 (+)NCBICelera
Cytogenetic Map7q13NCBI
RTCB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12231,248,280 - 31,273,030 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2231,248,280 - 31,273,030 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02213,394,160 - 13,418,862 (-)NCBIMhudiblu_PPA_v0panPan3
RTCB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11031,010,841 - 31,034,208 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1031,010,878 - 31,033,229 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1030,993,808 - 31,017,083 (+)NCBI
ROS_Cfam_1.01031,853,471 - 31,876,814 (+)NCBI
UMICH_Zoey_3.11031,593,115 - 31,622,657 (+)NCBI
UNSW_CanFamBas_1.01031,882,145 - 31,905,453 (+)NCBI
UU_Cfam_GSD_1.01032,068,649 - 32,091,998 (+)NCBI
Rtcb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494514,324,021 - 14,343,299 (+)NCBI
SpeTri2.0NW_0049364927,334,420 - 7,353,745 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RTCB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl512,580,295 - 12,641,906 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1512,580,293 - 12,605,722 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2512,366,207 - 12,392,202 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RTCB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11915,216,939 - 15,243,259 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1915,216,556 - 15,243,132 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666045110,763,914 - 110,789,838 (+)NCBIVero_WHO_p1.0
Rtcb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247502,045,092 - 2,064,233 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247502,045,093 - 2,062,640 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000011738   ⟹   ENSCLAP00000011601
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540541,360,370 - 41,375,215 (-)Ensembl
RefSeq Acc Id: XM_013519150   ⟹   XP_013374604
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540541,360,370 - 41,375,215 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013374604 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013374604   ⟸   XM_013519150
- Sequence:
RefSeq Acc Id: ENSCLAP00000011601   ⟸   ENSCLAT00000011738


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007997 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000011601 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000011738 ENTREZGENE, UniProtKB/TrEMBL
NCBI Gene Rtcb ENTREZGENE
UniProt A0A8C2V7X9_CHILA UniProtKB/TrEMBL