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ONTOLOGY REPORT - ANNOTATIONS


Term:non-proteinogenic amino acid metabolic process
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Accession:GO:0170041 term browser browse the term
Definition:The chemical reactions and pathways involving non-proteingenic amino acids.
Synonyms:exact_synonym: non-proteinogenic amino acid metabolism



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4-hydroxyproline catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoga1 4-hydroxy-2-oxoglutarate aldolase 1 involved_in ISO (PMID:21998747) RGD PMID:21998747 NCBI chr 1:240,856,991...240,884,243
Ensembl chr 1:240,857,126...240,884,568
JBrowse link
arginine biosynthetic process via ornithine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asl argininosuccinate lyase involved_in IEA
IBA
GO_REF:0000002
GO_REF:0000033
GO_REF:0000118
InterPro
GO_Central
TreeGrafter
GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr12:26,659,664...26,677,136
Ensembl chr12:26,659,565...26,679,662
JBrowse link
G Otc ornithine transcarbamylase involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr  X:12,453,834...12,529,954
Ensembl chr  X:12,453,834...12,566,918
JBrowse link
arginine catabolic process to ornithine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arg1 arginase 1 involved_in IDA
IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
RGD
PMID:15753084 GO_REF:0000033 GO_REF:0000118, RGD:8693655 NCBI chr 1:20,475,878...20,488,422
Ensembl chr 1:20,475,968...20,488,422
JBrowse link
G Arg2 arginase 2 involved_in TAS
IDA
IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
RGD
PMID:14871882 PMID:15753084 GO_REF:0000033 GO_REF:0000118, RGD:1358311, RGD:8693655 NCBI chr 6:97,936,002...97,961,379
Ensembl chr 6:97,936,002...97,961,378
JBrowse link
argininosuccinate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asl argininosuccinate lyase IDA RGD PMID:8586639 PMID:4062872 RGD:1599287, RGD:2300098 NCBI chr12:26,659,664...26,677,136
Ensembl chr12:26,659,565...26,679,662
JBrowse link
G Ass1 argininosuccinate synthase 1 involved_in IDA
IBA
IEA
ISO
GO_REF:0000033
GO_REF:0000118
(PMID:7977368)
GO_Central
TreeGrafter
RGD
PMID:7977368 PMID:4062872 GO_REF:0000033 GO_REF:0000118, RGD:2300098 NCBI chr 3:14,747,355...14,796,909
Ensembl chr 3:14,747,368...14,796,903
JBrowse link
beta-alanine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 2:206,609,043...207,474,982
Ensembl chr 2:206,609,122...207,474,982
JBrowse link
G Upb1 beta-ureidopropionase 1 TAS RGD PMID:8449931 RGD:634224 NCBI chr20:13,217,252...13,243,590
Ensembl chr20:13,217,258...13,243,590
JBrowse link
beta-alanine biosynthetic process via 3-ureidopropionate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upb1 beta-ureidopropionase 1 involved_in ISO
IBA
IEA
ISS
(PMID:22525402), (PMID:29976570)
GO_REF:0000033
GO_REF:0000118
GO_REF:0000024
RGD
GO_Central
TreeGrafter
UniProt
PMID:22525402 PMID:29976570 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 NCBI chr20:13,217,252...13,243,590
Ensembl chr20:13,217,258...13,243,590
JBrowse link
beta-alanine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh6a1 aldehyde dehydrogenase 6 family, member A1 IDA RGD PMID:2768248 RGD:1599052 NCBI chr 6:104,077,975...104,098,636
Ensembl chr 6:104,077,979...104,098,656
JBrowse link
beta-alanine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aasdh aminoadipate-semialdehyde dehydrogenase acts_upstream_of_or_within ISO (MGI:5630050|PMID:24467666) RGD PMID:24467666 MGI:5630050 NCBI chr14:31,255,019...31,281,802
Ensembl chr14:31,255,310...31,281,796
JBrowse link
G Dpys dihydropyrimidinase IDA RGD PMID:8307005 RGD:1624990 NCBI chr 7:70,822,648...70,929,255
Ensembl chr 7:70,835,789...70,929,231
JBrowse link
G Upb1 beta-ureidopropionase 1 IDA RGD PMID:7626590 RGD:1624989 NCBI chr20:13,217,252...13,243,590
Ensembl chr20:13,217,258...13,243,590
JBrowse link
citrulline biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh18a1 aldehyde dehydrogenase 18 family, member A1 involved_in ISO (PMID:11092761), (PMID:26297558) RGD PMID:11092761 PMID:26297558 NCBI chr 1:239,375,657...239,407,956
Ensembl chr 1:239,375,669...239,407,890
JBrowse link
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IDA
IBA
GO_REF:0000033 GO_Central
RGD
PMID:7053379 GO_REF:0000033, RGD:10755426 NCBI chr 6:25,292,133...25,315,078
Ensembl chr 6:25,292,133...25,319,861
JBrowse link
G Otc ornithine transcarbamylase involved_in IDA
IEA
IBA
ISO
GO_REF:0000118
GO_REF:0000033
(PMID:2556444), (PMID:8112735)
TreeGrafter
GO_Central
RGD
PMID:2556444 PMID:8112735 PMID:9472964 GO_REF:0000033 GO_REF:0000118, RGD:4144071 NCBI chr  X:12,453,834...12,529,954
Ensembl chr  X:12,453,834...12,566,918
JBrowse link
citrulline metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ass1 argininosuccinate synthase 1 involved_in ISO (PMID:7977368) RGD PMID:7977368 NCBI chr 3:14,747,355...14,796,909
Ensembl chr 3:14,747,368...14,796,903
JBrowse link
G Ddah1 dimethylarginine dimethylaminohydrolase 1 involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:19663506)
UniProt
GO_Central
RGD
PMID:19663506 GO_REF:0000024 GO_REF:0000033 NCBI chr 2:234,667,499...234,800,322
Ensembl chr 2:234,667,491...234,799,339
JBrowse link
G Ddah2 DDAH family member 2, ADMA-independent NOT|involved_in ISO (PMID:21493890), (PMID:37296100) RGD PMID:21493890 PMID:37296100 NCBI chr20:3,761,460...3,764,718
Ensembl chr20:3,761,465...3,764,511
JBrowse link
G Htt huntingtin acts_upstream_of_or_within ISO MGI:2177757 (MGI:3712404|PMID:17213233) RGD PMID:17213233 MGI:3712404 NCBI chr14:75,845,836...75,996,094
Ensembl chr14:75,845,836...75,995,070
JBrowse link
D-alanine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dao D-amino-acid oxidase involved_in ISO
IBA
IEA
(PMID:16616139), (PMID:20603179)
GO_REF:0000033
GO_REF:0000118
(MGI:5442503|PMID:20603179)
RGD
GO_Central
TreeGrafter
PMID:16616139 PMID:20603179 GO_REF:0000033 GO_REF:0000118 MGI:5442503 NCBI chr12:42,592,342...42,613,046
Ensembl chr12:42,592,343...42,612,741
JBrowse link
D-amino acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dao D-amino-acid oxidase involved_in ISO (PMID:29274788)
(PMID:16751595), (PMID:2572224)
RGD PMID:2572224 PMID:16751595 PMID:29274788 NCBI chr12:42,592,342...42,613,046
Ensembl chr12:42,592,343...42,612,741
JBrowse link
G Ddo D-aspartate oxidase involved_in IDA
IBA
IEA
ISO
PMID:25747990
GO_REF:0000033
GO_REF:0000118
(MGI:5442503|PMID:20603179), (MGI:7482880|PMID:37189369), (MGI:7565899|PMID:25747990), (MGI:7565904|PMID:32553892), (MGI:7565916|PMID:26058797)
(PMID:16751595), (PMID:17234685)
(PMID:20603179), (PMID:25747990), (PMID:28629864)
(PMID:33650155)
PMID:29292239
GO_Central
TreeGrafter
RGD
PMID:16751595 PMID:17234685 PMID:20603179 PMID:25747990 PMID:26058797 More... GO_REF:0000033 GO_REF:0000118 MGI:5442503 MGI:7482880 MGI:7565899 MGI:7565904 MGI:7565916, RGD:401901226, RGD:401901239 NCBI chr20:44,090,823...44,109,962
Ensembl chr20:44,090,914...44,133,095
JBrowse link
D-serine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Srr serine racemase involved_in
acts_upstream_of_or_within
ISO
IEA
IBA
(PMID:11054547), (PMID:15193426)
GO_REF:0000118
GO_REF:0000033
(MGI:1347751|PMID:10557334), (MGI:1926659|PMID:11054547), (MGI:2183617|PMID:12021263), (MGI:3529732|PMID:15710237)
RGD
TreeGrafter
GO_Central
PMID:10557334 PMID:11054547 PMID:12021263 PMID:15193426 PMID:15710237 GO_REF:0000033 GO_REF:0000118 MGI:1347751 MGI:1926659 MGI:2183617 MGI:3529732 NCBI chr10:59,769,563...59,786,688
Ensembl chr10:59,769,571...59,787,011
JBrowse link
D-serine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dao D-amino-acid oxidase involved_in ISO
IEA
IBA
(PMID:18544534)
GO_REF:0000118
GO_REF:0000033
RGD
TreeGrafter
GO_Central
PMID:18544534 GO_REF:0000033 GO_REF:0000118 NCBI chr12:42,592,342...42,613,046
Ensembl chr12:42,592,343...42,612,741
JBrowse link
D-serine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dao D-amino-acid oxidase involved_in ISO (PMID:21679769) RGD PMID:21679769 NCBI chr12:42,592,342...42,613,046
Ensembl chr12:42,592,343...42,612,741
JBrowse link
G Srr serine racemase involved_in ISO
IDA
(PMID:20106978) RGD PMID:20106978 PMID:20106978 RGD:8554326 NCBI chr10:59,769,563...59,786,688
Ensembl chr10:59,769,571...59,787,011
JBrowse link
gamma-aminobutyric acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abat 4-aminobutyrate aminotransferase IMP RGD PMID:19540876 RGD:9588538 NCBI chr10:6,996,688...7,092,835
Ensembl chr10:6,999,819...7,092,835
JBrowse link
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 involved_in ISO
ISS
IEA
(MGI:5697738|PMID:26430123)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:26430123 GO_REF:0000024 GO_REF:0000107 MGI:5697738 NCBI chr 1:218,000,470...218,152,962
Ensembl chr 1:218,042,127...218,152,961
JBrowse link
G Gad1 glutamate decarboxylase 1 involved_in IDA
IBA
IEA
ISO
GO_REF:0000033
GO_REF:0000118
(PMID:17384644)
GO_REF:0000107
(MGI:892697|PMID:9177246)
PMID:1924335
GO_Central
TreeGrafter
RGD
Ensembl
PMID:9177246 PMID:17384644 PMID:17712632 PMID:1924335 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:892697, RGD:6480258, RGD:728511 NCBI chr 3:55,369,704...55,410,335
Ensembl chr 3:55,369,704...55,410,333
JBrowse link
G Gad2 glutamate decarboxylase 2 involved_in IDA
IBA
GO_REF:0000033 GO_Central
RGD
PMID:22108820 GO_REF:0000033, RGD:401900601 NCBI chr17:84,763,630...84,826,155
Ensembl chr17:84,763,628...84,826,155
JBrowse link
G Slc1a3 solute carrier family 1 member 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1931872 (MGI:3613135|PMID:15305132)
Ensembl
RGD
PMID:15305132 GO_REF:0000107 MGI:3613135 NCBI chr 2:57,755,495...57,830,605
Ensembl chr 2:57,755,497...57,830,605
JBrowse link
G Slc38a1 solute carrier family 38, member 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:6795362|PMID:32668809)
UniProt
RGD
PMID:32668809 GO_REF:0000024 MGI:6795362 NCBI chr 7:127,733,230...127,802,541
Ensembl chr 7:127,738,226...127,802,218
JBrowse link
gamma-aminobutyric acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abat 4-aminobutyrate aminotransferase involved_in ISO
IBA
IEA
IC
(PMID:11561735)
GO_REF:0000033
GO_REF:0000118
PMID:10447691
RGD
GO_Central
TreeGrafter
PMID:11561735 PMID:10447691 GO_REF:0000033 GO_REF:0000118, RGD:631980 NCBI chr10:6,996,688...7,092,835
Ensembl chr10:6,999,819...7,092,835
JBrowse link
G Aldh5a1 aldehyde dehydrogenase 5 family, member A1 involved_in
acts_upstream_of_or_within
ISS
IBA
ISO
TAS
IEA
GO_REF:0000024
GO_REF:0000033
MGI:2180159 (MGI:2151301|PMID:11544478), (MGI:3050939|PMID:15262267)
PMID:7814412
(PMID:15037717), (PMID:9683595)
GO_REF:0000041
UniProt
GO_Central
RGD
PMID:9683595 PMID:11544478 PMID:15037717 PMID:15262267 PMID:7814412 GO_REF:0000024 GO_REF:0000033 GO_REF:0000041 MGI:2151301 MGI:3050939, RGD:632258 NCBI chr17:40,132,339...40,158,677
Ensembl chr17:40,130,883...40,158,677
JBrowse link
gamma-aminobutyric acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abat 4-aminobutyrate aminotransferase involved_in ISO (PMID:15528998) RGD PMID:15528998 NCBI chr10:6,996,688...7,092,835
Ensembl chr10:6,999,819...7,092,835
JBrowse link
G Aldh5a1 aldehyde dehydrogenase 5 family, member A1 acts_upstream_of_or_within ISO MGI:2180159 (MGI:2177837|PMID:12067239), (MGI:3629451|PMID:16647690), (MGI:3639637|PMID:16504488) RGD PMID:12067239 PMID:16504488 PMID:16647690 MGI:2177837 MGI:3629451 MGI:3639637 NCBI chr17:40,132,339...40,158,677
Ensembl chr17:40,130,883...40,158,677
JBrowse link
G Phgdh phosphoglycerate dehydrogenase acts_upstream_of_or_within ISO MGI:3769591 (MGI:3835979|PMID:19114063) RGD PMID:19114063 MGI:3835979 NCBI chr 2:185,906,962...185,936,054
Ensembl chr 2:185,906,966...185,935,944
JBrowse link
homocysteine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blmh bleomycin hydrolase involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr10:61,772,112...61,815,212
Ensembl chr10:61,758,478...61,815,212
JBrowse link
G Cbs cystathionine beta synthase involved_in ISO
ISS
(PMID:18776696), (PMID:24416422)
GO_REF:0000024
RGD
UniProt
PMID:18776696 PMID:24416422 GO_REF:0000024 NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764
JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase involved_in ISO (PMID:11466310) RGD PMID:11466310 NCBI chr 1:34,866,991...34,899,425
Ensembl chr 1:34,867,089...34,899,425
JBrowse link
homocysteine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta synthase involved_in
acts_upstream_of_or_within
TAS
IDA
ISO
(PMID:19010420), (PMID:20031578), (PMID:23981774)
MGI:1857139 (MGI:1888627|PMID:10953023), (MGI:1890086|PMID:10993757), (MGI:3039983|PMID:15131763), (MGI:3510570|PMID:15555590), (MGI:3611588|PMID:15916860), (MGI:3656462|PMID:15622513), (MGI:3663564|PMID:16226235), (MGI:3798351|PMID:18541157), (MGI:71081|PMID:7878023)
RGD PMID:7878023 PMID:10953023 PMID:10993757 PMID:15131763 PMID:15555590 More... MGI:1888627 MGI:1890086 MGI:3039983 MGI:3510570 MGI:3611588 MGI:3656462 MGI:3663564 MGI:3798351 MGI:71081, RGD:634704, RGD:1359024 NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764
JBrowse link
G Cps1 carbamoyl-phosphate synthase 1 involved_in ISO (PMID:20031578) RGD PMID:20031578 NCBI chr 9:68,614,153...68,737,037
Ensembl chr 9:68,614,153...68,737,033
JBrowse link
G Cth cystathionine gamma-lyase IDA RGD PMID:9359866 RGD:1359024 NCBI chr 2:246,975,888...247,002,234
Ensembl chr 2:246,975,894...247,002,234
JBrowse link
G Dpep1 dipeptidase 1 involved_in ISO
ISS
(PMID:20031578)
GO_REF:0000024
RGD
UniProt
PMID:20031578 GO_REF:0000024 NCBI chr19:51,209,831...51,237,004
Ensembl chr19:51,219,660...51,235,257
JBrowse link
G Mmut methylmalonyl-CoA mutase involved_in ISO (PMID:20031578) RGD PMID:20031578 NCBI chr 9:19,928,720...19,956,985
Ensembl chr 9:19,928,727...19,957,046
JBrowse link
G Mthfr methylenetetrahydrofolate reductase involved_in IEP
ISO
(PMID:20031578) RGD PMID:20031578 PMID:18726220 RGD:2317121 NCBI chr 5:158,465,248...158,484,999
Ensembl chr 5:158,465,296...158,483,797
JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase involved_in IDA
IBA
IEA
IMP
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
RGD
PMID:11730351 PMID:21121936 GO_REF:0000033 GO_REF:0000118, RGD:1601423, RGD:7207080 NCBI chr17:58,219,998...58,308,560
Ensembl chr17:58,220,071...58,304,822
JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase involved_in ISO
IBA
IEA
(MGI:3710265|PMID:17369066)
GO_REF:0000033
GO_REF:0000118
RGD
GO_Central
TreeGrafter
PMID:17369066 GO_REF:0000033 GO_REF:0000118 MGI:3710265 NCBI chr 1:34,866,991...34,899,425
Ensembl chr 1:34,867,089...34,899,425
JBrowse link
G Nox4 NADPH oxidase 4 involved_in ISO (PMID:20031578) RGD PMID:20031578 NCBI chr 1:140,900,886...141,078,844
Ensembl chr 1:140,901,097...141,077,406
JBrowse link
hydroxylysine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plod2 procollagen lysine, 2-oxoglutarate 5-dioxygenase 2 involved_in ISO
IEA
(PMID:10934207)
GO_REF:0000107
RGD
Ensembl
PMID:10934207 GO_REF:0000107 NCBI chr 8:93,084,548...93,167,255
Ensembl chr 8:93,084,513...93,167,255
JBrowse link
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 involved_in ISO
IEA
(MGI:6202004|PMID:16447251)
GO_REF:0000107
RGD
Ensembl
PMID:16447251 GO_REF:0000107 MGI:6202004 NCBI chr12:19,676,384...19,686,945
Ensembl chr12:19,676,386...19,686,960
JBrowse link
kynurenine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aadat aminoadipate aminotransferase involved_in ISO
ISS
(PMID:18620547)
GO_REF:0000024
RGD
UniProt
PMID:18620547 GO_REF:0000024 NCBI chr16:29,509,392...29,544,332
Ensembl chr16:29,509,394...29,544,332
JBrowse link
G Kmo kynurenine 3-monooxygenase involved_in ISO
IBA
IEA
IDA
(PMID:10672018), (PMID:26752518), (PMID:29208702), (PMID:29429898)
GO_REF:0000033
GO_REF:0000118
(MGI:5780894|PMID:26752518)
RGD
GO_Central
TreeGrafter
PMID:10672018 PMID:26752518 PMID:29208702 PMID:29429898 PMID:26752518 GO_REF:0000033 GO_REF:0000118 MGI:5780894, RGD:11342439 NCBI chr13:87,557,080...87,589,334
Ensembl chr13:87,557,286...87,588,881
JBrowse link
G Kyat1 kynurenine aminotransferase 1 involved_in ISO
ISS
(PMID:19338303)
GO_REF:0000024
RGD
UniProt
PMID:19338303 GO_REF:0000024 NCBI chr 3:13,459,598...13,493,308
Ensembl chr 3:13,459,591...13,493,355
JBrowse link
G Kyat3 kynurenine aminotransferase 3 involved_in ISS
ISO
GO_REF:0000024
(MGI:3835225|PMID:19029248)
UniProt
RGD
PMID:19029248 GO_REF:0000024 MGI:3835225 NCBI chr 2:231,701,881...231,747,462
Ensembl chr 2:231,701,963...231,747,227
JBrowse link
L-kynurenine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kyat1 kynurenine aminotransferase 1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 3:13,459,598...13,493,308
Ensembl chr 3:13,459,591...13,493,355
JBrowse link
G Kyat3 kynurenine aminotransferase 3 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 2:231,701,881...231,747,462
Ensembl chr 2:231,701,963...231,747,227
JBrowse link
G Kynu kynureninase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 3:27,778,646...27,929,470
Ensembl chr 3:27,778,772...27,929,488
JBrowse link
L-kynurenine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aadat aminoadipate aminotransferase involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr16:29,509,392...29,544,332
Ensembl chr16:29,509,394...29,544,332
JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:9,174,304...9,199,995
Ensembl chr19:9,174,311...9,199,994
JBrowse link
G Kmo kynurenine 3-monooxygenase IDA RGD PMID:23690293 RGD:13513904 NCBI chr13:87,557,080...87,589,334
Ensembl chr13:87,557,286...87,588,881
JBrowse link
G Kyat1 kynurenine aminotransferase 1 involved_in IDA
IEA
GO_REF:0000108 GOC
RGD
PMID:7796908 GO_REF:0000108, RGD:9685040 NCBI chr 3:13,459,598...13,493,308
Ensembl chr 3:13,459,591...13,493,355
JBrowse link
N(omega),N(omega)-dimethyl-L-arginine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agxt2 alanine-glyoxylate aminotransferase 2 involved_in IDA PMID:2123486 UniProt PMID:2123486 RGD:401901222 NCBI chr 2:59,336,252...59,377,664
Ensembl chr 2:59,336,283...59,377,926
JBrowse link
negative regulation of citrulline biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b4 ATPase plasma membrane Ca2+ transporting 4 involved_in ISO (PMID:19278978) RGD PMID:19278978 NCBI chr13:45,156,137...45,255,292
Ensembl chr13:45,156,146...45,255,246
JBrowse link
negative regulation of ornithine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Oaz1 ornithine decarboxylase antizyme 1 IDA RGD PMID:8166639 RGD:401851045 NCBI chr 7:8,883,855...8,886,315
Ensembl chr 7:8,883,851...8,886,310
JBrowse link
ornithine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh18a1 aldehyde dehydrogenase 18 family, member A1 involved_in ISO (PMID:11092761), (PMID:26297558) RGD PMID:11092761 PMID:26297558 NCBI chr 1:239,375,657...239,407,956
Ensembl chr 1:239,375,669...239,407,890
JBrowse link
ornithine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otc ornithine transcarbamylase involved_in ISO (PMID:2556444), (PMID:8112735) RGD PMID:2556444 PMID:8112735 NCBI chr  X:12,453,834...12,529,954
Ensembl chr  X:12,453,834...12,566,918
JBrowse link
ornithine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Azin2 antizyme inhibitor 2 acts_upstream_of_or_within ISO (MGI:3695330|PMID:16916800) RGD PMID:16916800 MGI:3695330 NCBI chr 5:141,281,310...141,310,415
Ensembl chr 5:141,281,249...141,310,397
JBrowse link
G Hnf4a hepatocyte nuclear factor 4, alpha involved_in ISO
IEA
(PMID:17827783)
GO_REF:0000107
RGD
Ensembl
PMID:17827783 GO_REF:0000107 NCBI chr 3:152,186,787...152,248,320
Ensembl chr 3:152,186,787...152,248,320
JBrowse link
G Oat ornithine aminotransferase TAS RGD PMID:14871882 RGD:1358311 NCBI chr 1:187,347,862...187,367,644
Ensembl chr 1:187,347,865...187,367,682
JBrowse link
G Otc ornithine transcarbamylase IDA RGD PMID:4062872 RGD:2300098 NCBI chr  X:12,453,834...12,529,954
Ensembl chr  X:12,453,834...12,566,918
JBrowse link
G Slc25a2 solute carrier family 25 member 2 involved_in ISO (PMID:12948741) RGD PMID:12948741 NCBI chr18:29,452,943...29,456,324
Ensembl chr18:29,453,582...29,460,383
JBrowse link
peptidyl-proline hydroxylation to 4-hydroxy-L-proline term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G P4ha1 prolyl 4-hydroxylase subunit alpha 1 TAS RGD PMID:11997102 RGD:625562 NCBI chr20:27,302,046...27,352,098
Ensembl chr20:27,302,141...27,352,786
JBrowse link
positive regulation of homocysteine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Comt catechol-O-methyltransferase IMP RGD PMID:15779086 RGD:2289784 NCBI chr11:82,568,052...82,587,642
Ensembl chr11:82,568,025...82,587,642
JBrowse link
positive regulation of L-dopa biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Park7 Parkinsonism associated deglycase involved_in ISO
IEA
ISS
(PMID:16731528)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
ParkinsonsUK-UCL
PMID:16731528 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:161,353,718...161,376,993
Ensembl chr 5:161,353,719...161,376,970
JBrowse link
putrescine biosynthetic process from ornithine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Azin1 antizyme inhibitor 1 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 7:69,654,773...69,681,578
Ensembl chr 7:69,654,663...69,681,578
JBrowse link
G Azin2 antizyme inhibitor 2 involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr 5:141,281,310...141,310,415
Ensembl chr 5:141,281,249...141,310,397
JBrowse link
G Ldc1 leucine decarboxylase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:142,551,120...142,563,217
Ensembl chr 5:142,552,008...142,563,074
JBrowse link
G Odc1 ornithine decarboxylase 1 involved_in ISS
IBA
ISO
IEA
GO_REF:0000024
GO_REF:0000033
(MGI:5574513|PMID:24967154)
GO_REF:0000041
UniProt
GO_Central
RGD
PMID:24967154 GO_REF:0000024 GO_REF:0000033 GO_REF:0000041 MGI:5574513 NCBI chr 6:40,329,831...40,336,444
Ensembl chr 6:40,329,964...40,336,440
JBrowse link
S-adenosylhomocysteine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahcy adenosylhomocysteinase acts_upstream_of_or_within IDA
ISO
(MGI:2183618|PMID:12023972) RGD PMID:12023972 PMID:11741948 MGI:2183618, RGD:730275 NCBI chr 3:143,569,134...143,584,359
Ensembl chr 3:143,569,094...143,584,393
JBrowse link
S-adenosylhomocysteine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Comt catechol-O-methyltransferase TAS RGD PMID:12584150 RGD:1359089 NCBI chr11:82,568,052...82,587,642
Ensembl chr11:82,568,025...82,587,642
JBrowse link
G Gamt guanidinoacetate N-methyltransferase IDA RGD PMID:15533043 RGD:1359081 NCBI chr 7:9,448,590...9,451,413
Ensembl chr 7:9,448,628...9,451,778
JBrowse link
G Gnmt glycine N-methyltransferase involved_in IDA
IEA
IBA
IMP
GO_REF:0000118
GO_REF:0000033
PMID:10756111
TreeGrafter
GO_Central
RGD
PMID:15347642 PMID:10756111 GO_REF:0000033 GO_REF:0000118, RGD:1359070, RGD:12793006 NCBI chr 9:14,254,675...14,258,028
Ensembl chr 9:14,254,675...14,258,434
JBrowse link
G Icmt isoprenylcysteine carboxyl methyltransferase IMP RGD PMID:9192075 RGD:2289655 NCBI chr 5:162,804,368...162,811,129
Ensembl chr 5:162,804,368...162,811,128
JBrowse link
G Pcmt1 protein-L-isoaspartate (D-aspartate) O-methyltransferase 1 IDA RGD PMID:8263531 RGD:729481 NCBI chr 1:2,111,756...2,160,354
Ensembl chr 1:2,111,763...2,159,201
JBrowse link
G Pemt phosphatidylethanolamine N-methyltransferase IDA RGD PMID:8344945 RGD:729486 NCBI chr10:44,775,910...44,849,990
Ensembl chr10:44,775,911...44,850,013
JBrowse link
G Pnmt phenylethanolamine-N-methyltransferase TAS RGD PMID:12438084 RGD:1359087 NCBI chr10:83,383,019...83,386,557
Ensembl chr10:83,384,923...83,386,556
JBrowse link
sarcosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sardh sarcosine dehydrogenase involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 3:10,510,553...10,575,342
Ensembl chr 3:10,510,553...10,573,874
JBrowse link
sarcosine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnmt glycine N-methyltransferase involved_in IMP
IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
RGD
PMID:18501206 GO_REF:0000033 GO_REF:0000118, RGD:7242952 NCBI chr 9:14,254,675...14,258,028
Ensembl chr 9:14,254,675...14,258,434
JBrowse link
transsulfuration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta synthase IDA RGD PMID:16636197 RGD:1600624 NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764
JBrowse link
G Cth cystathionine gamma-lyase involved_in TAS
IBA
IEA
ISO
GO_REF:0000033
GO_REF:0000118
GO_REF:0000107
GO_REF:0000002
(PMID:19428278)
GO_Central
TreeGrafter
Ensembl
InterPro
RGD
PMID:19428278 PMID:15347670 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118, RGD:1600762 NCBI chr 2:246,975,888...247,002,234
Ensembl chr 2:246,975,894...247,002,234
JBrowse link
G Mpst mercaptopyruvate sulfurtransferase IDA RGD PMID:17130129 RGD:9685559 NCBI chr 7:109,955,581...109,963,155
Ensembl chr 7:109,955,675...109,963,141
JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in ISO
IEA
(MGI:5621260|PMID:23190757)
GO_REF:0000107
RGD
Ensembl
PMID:23190757 GO_REF:0000107 MGI:5621260 NCBI chr 6:94,977,862...95,045,375
Ensembl chr 6:94,977,862...95,045,372
JBrowse link
tryptophan catabolic process to kynurenine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afmid arylformamidase involved_in
acts_upstream_of_or_within
IEA
IBA
ISO
GO_REF:0000041
GO_REF:0000033
(MGI:3587527|PMID:15866519)
UniProt
GO_Central
RGD
PMID:15866519 GO_REF:0000033 GO_REF:0000041 MGI:3587527 NCBI chr10:103,046,129...103,061,718
Ensembl chr10:103,046,180...103,061,718
JBrowse link
G Ido1 indoleamine 2,3-dioxygenase 1 involved_in
acts_upstream_of_or_within
IDA
IBA
IEA
ISO
GO_REF:0000033
GO_REF:0000118
GO_REF:0000107
GO_REF:0000002
(MGI:2151782|PMID:2419335), (MGI:2156954|PMID:11751753)
GO_Central
TreeGrafter
Ensembl
InterPro
RGD
PMID:2419335 PMID:11751753 PMID:10719243 PMID:11513477 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:2151782 MGI:2156954, RGD:2290190, RGD:2290543 NCBI chr16:67,430,654...67,442,726
Ensembl chr16:67,430,578...67,442,730
JBrowse link
G Ido2 indoleamine 2,3-dioxygenase 2 involved_in
acts_upstream_of_or_within
IEA
IBA
ISO
GO_REF:0000107
GO_REF:0000033
GO_REF:0000041
(MGI:3712725|PMID:17499941), (MGI:3719924|PMID:17671174)
(PMID:17671174)
Ensembl
GO_Central
UniProt
RGD
PMID:17499941 PMID:17671174 GO_REF:0000033 GO_REF:0000041 GO_REF:0000107 MGI:3712725 MGI:3719924 NCBI chr16:67,459,158...67,498,052
Ensembl chr16:67,459,190...67,496,324
JBrowse link
G Kynu kynureninase involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr 3:27,778,646...27,929,470
Ensembl chr 3:27,778,772...27,929,488
JBrowse link
G Tdo2 tryptophan 2,3-dioxygenase involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:27762317)
GO_REF:0000041
UniProt
RGD
PMID:27762317 GO_REF:0000024 GO_REF:0000041 NCBI chr 2:167,269,581...167,287,511
Ensembl chr 2:167,269,579...167,287,511
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20295
    metabolic process 11722
      nitrogen compound metabolic process 9664
        organonitrogen compound metabolic process 5792
          non-proteinogenic amino acid metabolic process 72
            1-aminocyclopropane-1-carboxylate metabolic process + 0
            4-hydroxyproline metabolic process + 2
            D-amino acid metabolic process + 3
            L-dopa metabolic process + 1
            L-methionine biosynthetic process from L-homoserine via cystathionine + 0
            L-methionine biosynthetic process from O-phospho-L-homoserine and cystathionine 0
            L-proline betaine metabolic process + 0
            N(omega),N(omega)-dimethyl-L-arginine metabolic process + 1
            N(omega)-methyl-L-arginine metabolic process + 0
            N-alpha,N-alpha,N-alpha-trimethyl-L-histidine metabolic process + 0
            S-adenosylhomocysteine metabolic process + 8
            argininosuccinate metabolic process 2
            beta-alanine metabolic process + 5
            citrulline metabolic process + 8
            cyanoamino acid metabolic process + 0
            discadenine metabolic process + 0
            gamma-aminobutyric acid metabolic process + 8
            homocysteine metabolic process + 13
            hydroxylysine metabolic process + 2
            hypusine metabolic process 0
            kynurenine metabolic process + 10
            non-proteinogenic amino acid biosynthetic process + 16
            non-proteinogenic amino acid catabolic process + 17
            ornithine metabolic process + 13
            peptidyl-lysine hydroxylation to 4-hydroxy-L-lysine 0
            peptidyl-proline hydroxylation to 3-hydroxy-L-proline 0
            phosphoarginine metabolic process + 0
            sarcosine metabolic process + 2
Path 2
Term Annotations click to browse term
  biological_process 20295
    cellular process 18772
      cellular metabolic process 10283
        organic acid metabolic process 1074
          oxoacid metabolic process 1056
            carboxylic acid metabolic process 1037
              non-proteinogenic amino acid metabolic process 72
                1-aminocyclopropane-1-carboxylate metabolic process + 0
                4-hydroxyproline metabolic process + 2
                D-amino acid metabolic process + 3
                L-dopa metabolic process + 1
                L-methionine biosynthetic process from L-homoserine via cystathionine + 0
                L-methionine biosynthetic process from O-phospho-L-homoserine and cystathionine 0
                L-proline betaine metabolic process + 0
                N(omega),N(omega)-dimethyl-L-arginine metabolic process + 1
                N(omega)-methyl-L-arginine metabolic process + 0
                N-alpha,N-alpha,N-alpha-trimethyl-L-histidine metabolic process + 0
                S-adenosylhomocysteine metabolic process + 8
                argininosuccinate metabolic process 2
                beta-alanine metabolic process + 5
                citrulline metabolic process + 8
                cyanoamino acid metabolic process + 0
                discadenine metabolic process + 0
                gamma-aminobutyric acid metabolic process + 8
                homocysteine metabolic process + 13
                hydroxylysine metabolic process + 2
                hypusine metabolic process 0
                kynurenine metabolic process + 10
                non-proteinogenic amino acid biosynthetic process + 16
                non-proteinogenic amino acid catabolic process + 17
                ornithine metabolic process + 13
                peptidyl-lysine hydroxylation to 4-hydroxy-L-lysine 0
                peptidyl-proline hydroxylation to 3-hydroxy-L-proline 0
                phosphoarginine metabolic process + 0
                sarcosine metabolic process + 2
paths to the root