Bp126 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bp126 (Blood pressure QTL 126) Rattus norvegicus

Symbol: Bp126
Name: Blood pressure QTL 126
RGD ID: 631655
Trait: arterial blood pressure trait   (VT:2000000)    
Measurement Type: systolic blood pressure   (CMO:0000004)    
LOD Score: 4.0
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81564,571,127 - 108,192,169RGD_MAPPER_PIPELINE
mRatBN7.21558,156,477 - 101,769,107RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01565,520,564 - 110,520,564RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01569,016,189 - 114,016,189RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41565,395,920 - 109,758,846RGD_MAPPER_PIPELINERGSC3.4
RGSC_v3.11565,411,697 - 109,774,626RGD
Cross Type: Not Available
Strains Crossed: WKY/Izm SHRSP/A3Izm 
JBrowse: View Region in Genome Browser (JBrowse)
Model




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp126Rathypertension  IDA 629623 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp126Ratincreased systemic arterial blood pressure  IAGP 629623 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp126Ratsystolic blood pressure  IDA 629623 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp126Ratcontrolled sodium content diet  IDA 629623 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp126Rattail cuff plethysmography  IDA 629623 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp126RatSHRSP/A3Izm  IEA 629623 RGD 
Bp126RatWKY/Izm  IEA 629623 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp126Ratarterial blood pressure trait  IDA 629623 RGD 


#
Reference Title
Reference Citation
1. Genome-wide searches for blood pressure quantitative trait loci in the stroke-prone spontaneously hypertensive rat of a Japanese colony. Kato N, etal., J Hypertens 2003 Feb;21(2):295-303.


1 to 20 of 296 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
9466192Uqcrbl2ubiquinol-cytochrome c reductase binding protein like 2155875934358759666Rat
41086981LOC120097308U6 spliceosomal RNA155884001758840119Rat
40958512LOC120097052uncharacterized LOC120097052155889457659015688Rat
41262856LOC120097242small nucleolar RNA SNORA17155906759759067728Rat
40975150LOC120097286small nucleolar RNA U3155954783759548029Rat
1304753Pcdh17protocadherin 17156022208860316172Rat
11379167LOC108352949uncharacterized LOC108352949156023615860255653Rat
41315464LOC120097053uncharacterized LOC120097053156138063461394655Rat
40989554LOC120097194U6 spliceosomal RNA156219208462192173Rat
1593287Diaph3diaphanous-related formin 3156254337563013060Rat
41002785Trnav-aac40transfer RNA valine (anticodon AAC) 40156270754162707622Rat
41189376LOC120097230small nucleolar RNA SNORA48156305046163050601Rat
41127910Atp5mj-ps2ATP synthase membrane subunit j, pseudogene 2156320208063202497Rat
2320163Mfap1a-ps2microfibrillar-associated protein 1A, pseudogene 2156327575063276346Rat
1310126Tdrd3tudor domain containing 3156334053163497208Rat
41326155LOC120097228small nucleolar RNA SNORA48156366873363668876Rat
41026458LOC120097310U6 spliceosomal RNA156374503163745137Rat
41096054LOC120093128uncharacterized LOC120093128156393710263941299Rat
6496491Rpsa-ps1ribosomal protein SA, pseudogene 1156394891363949900Rat
41381972Tubal-ps1tubulin, alpha like, pseudogene 1156407140364072451Rat

1 to 20 of 296 rows
1 to 20 of 351 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
10504D15Mco2226158064042880640727Ratregion
10504D15Mco2226158064050180640727Ratregion
33820D15Mit6210159136585891366070Ratregion
34160D15Mgh5108159501812095018228Ratregion
34162D15Mgh6218159584030895840528Ratregion
34222D15Mgh8139157369051873690657Ratregion
34357D15Mgh4106157630609976306205Ratregion
34409D15Mgh9158158226252082262678Ratregion
36045D15Rat28155159934721999347374Ratregion
36149D15Rat26147159234692692347073Ratregion
37534D15Rat49114159731991197320025Ratregion
37584D15Rat71197157832994278330139Ratregion
35230D15Rat22146157369906973699215Ratregion
35321D15Rat27138159904314899043291Ratregion
35497D15Rat25154159300474493004898Ratregion
37014D15Rat24130159444176894441898Ratregion
37086D15Rat23138157600356976003707Ratregion
36663D15Rat21193156832716568327360Ratregion
38106D15Rat50205159859654598596747Ratregion
38178D15Rat63176159979407199794247Ratregion
1 to 20 of 351 rows

Peak: (Ednrb)
Rat AssemblyChrPosition (strand)Source
GRCr81587,055,490 - 87,086,765 (-)NCBI
mRatBN7.21580,640,839 - 80,672,115 (-)NCBI
mRatBN7.2 Ensembl1580,643,043 - 80,672,115 (-)Ensembl
UTH_Rnor_SHR_Utx1584,622,892 - 84,651,923 (-)NCBI
UTH_Rnor_SHRSP_BbbUtx_1.01585,745,953 - 85,774,986 (-)NCBI
UTH_Rnor_WKY_Bbb_1.01582,673,598 - 82,702,629 (-)NCBI
Rnor_6.01588,004,775 - 88,036,354 (-)NCBI
Rnor_6.0 Ensembl1588,006,977 - 88,036,354 (-)Ensembl
Rnor_5.01591,500,400 - 91,531,979 (-)NCBI
RGSC_v3.41587,893,141 - 87,898,700 (-)NCBI
RGSC_v3.11587,908,924 - 87,914,471 (-)NCBI
Celera1579,772,740 - 79,801,760 (-)NCBI
RH 3.4 Map15496.21RGD
Cytogenetic Map15q22NCBI


1 to 10 of 38 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1575788062101769107Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1568327165100062518Rat
1300118Bp190Blood pressure QTL 1902.94arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)158226252098288169Rat
1358354Srcrt5Stress Responsive Cort QTL 53.38blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)159815000199043291Rat
724545Niddm54Non-insulin dependent diabetes mellitus QTL 540.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)155079449473699215Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1576306099101769107Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1300120Kidm7Kidney mass QTL 73.55kidney mass (VT:0002707)left kidney wet weight to body weight ratio (CMO:0001954)158226252098288169Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat

1 to 10 of 38 rows


Database
Acc Id
Source(s)
NCBI Gene Bp126

Note Type Note Reference