Colcr6 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Colcr6 (Colorectal carcinoma resistance QTL 6) Rattus norvegicus

Symbol: Colcr6
Name: Colorectal carcinoma resistance QTL 6
RGD ID: 1641889
Previously known as: rat Colorectal carcinoma resistance 6; rCcr6
Trait: intestine integrity trait   (VT:0010554)    
Measurement Type: benign colorectal tumor surface area measurement   (CMO:0001799)    
LOD Score: 2.9
P Value: 0.0126
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81583,700,787 - 108,192,169RGD_MAPPER_PIPELINE
mRatBN7.21573,690,518 - 99,794,247RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01581,255,292 - 109,133,904RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01584,794,264 - 112,515,839RGDRnor5.0
RGSC_v3.41580,361,961 - 107,849,649RGDRGSC3.4
RGSC_v3.11580,377,742 - 107,865,429RGD
Cross Type: intercross
Strains Crossed: ACI/SegHsd WF/CrCrli 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
ACI/SegHsd  (IEA)
WF/CrCrli  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Identification and chromosome mapping of loci predisposing to colorectal cancer that control Wnt/{beta}-catenin pathway and progression of early lesions in the rat. De Miglio MR, etal., Carcinogenesis. 2007 May 17;.
2. Most lung and colon cancer susceptibility genes are pair-wise linked in mice, humans and rats. Quan L, etal., PLoS One. 2011 Feb 24;6(2):e14727.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
9409882Matr3-ps2matrin 3, pseudogene 2157388290973886465Rat
1559682Ppial4gpeptidylprolyl isomerase A like 4G157401562874016215Rat
41121747LOC120097259small nucleolar RNA SNORA17157404462274044753Rat
1559579Ski-ps1Ski proto-oncogene, pseudogene 1157416494974169032Rat
727855Setl1SET-like protein 1157451290974513767Rat
1592073Dach1dachshund family transcription factor 1157452812274909811Rat
41336497Hmgn4-ps4high mobility group nucleosomal binding domain 4, pseudogene 4157462079774621379Rat
41377666Eif1-ps4eukaryotic translation initiation factor 1, pseudogene 4157486420674864707Rat
9459085LOC103693764uncharacterized LOC103693764157490991974915756Rat
40948418LOC120097190uncharacterized LOC120097190157495382274967542Rat
1560069Rpl27l4ribosomal protein L27 like 4157501018575011443Rat
1593229Eef1g-ps9eukaryotic translation elongation factor 1 gamma, pseudogene 9157509038375091676Rat
1592142Pes1-ps6pescadillo ribosomal biogenesis factor 1, pseudogene 6157532363475325610Rat
41030389LOC120097059uncharacterized LOC120097059157557001275574783Rat
1592140Mzt1mitotic spindle organizing protein 1157578728175797589Rat
1309522Borabora, aurora kinase A activator157579762475835599Rat
1304646Dis3DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease157582004075850450Rat
2320932Spic-ps2Spi-C transcription factor, pseudogene 2157582978175831885Rat
1305077Pibf1progesterone immunomodulatory binding factor 1157585038976019711Rat
621446Klf5KLF transcription factor 5157606032076079445Rat
41254968LOC120097293U6 spliceosomal RNA157617301176173117Rat
2321007Serpinb6l-ps1serpin family B member 6 like, pseudogene 1157620740576208337Rat
7653320LOC102553927uncharacterized LOC102553927157627260276347580Rat
41354306LOC120097060uncharacterized LOC120097060157633918676341011Rat
41131207LOC120097267U2 spliceosomal RNA157653365876533849Rat
1309204Klf12KLF transcription factor 12157662877877062000Rat
9194298LOC103693766uncharacterized LOC103693766157664178776658502Rat
41085385LOC120097237small nucleolar RNA SNORA17157719048977190617Rat
1592139Rpl10a-ps3ribosomal protein L10A, pseudogene 3157731037477317398Rat
11498208Gapdhl3glyceraldehyde-3-phosphate dehydrogenase like 3157732467577471131Rat
11376868LOC108352955uncharacterized LOC108352955157749736177507913Rat
41363119LOC120097317U6 spliceosomal RNA157755266577552761Rat
2324281Selenok-ps4selenoprotein K, pseudogene 4157760905977609793Rat
41103500LOC120097287U4 spliceosomal RNA157766526677665430Rat
7679581LOC102555382uncharacterized LOC102555382157783604977841407Rat
1561609Tbc1d4TBC1 domain family, member 4157825603078434168Rat
2320734Uqcr10-ps1ubiquinol-cytochrome c reductase, complex III subunit X, pseudogene 1157845200178452433Rat
1560745Commd6COMM domain containing 6157846733378474382Rat
1561196Uchl3ubiquitin C-terminal hydrolase L3157848530478527355Rat
2323955Hax1-ps3HCLS1 associated protein X-1, pseudogene 3157853373578534635Rat
1302984Lmo7LIM domain 7157856699978769833Rat
1592138Got2-ps4glutamic-oxaloacetic transaminase 2, pseudogene 4157880882278810075Rat
1592110Eif3k-ps3eukaryotic translation initiation factor 3, subunit K, pseudogene 3157897398078974607Rat
41334176LOC120096897nucleoside diphosphate kinase B-like157898122778983942Rat
41361993LOC120097243small nucleolar RNA SNORA17157919355479193685Rat
11427239LOC108352956uncharacterized LOC108352956157932711779349197Rat
7577763LOC102556284uncharacterized LOC102556284157938945979463606Rat
41323194LOC120097062uncharacterized LOC120097062157943056379436640Rat
7632669LOC102546300uncharacterized LOC102546300157962671979635335Rat
7502353LOC102546379uncharacterized LOC102546379157967613879677687Rat
1309421Kctd12potassium channel tetramerization domain containing 12157980007879806017Rat
41227491LOC120097063uncharacterized LOC120097063157986770779873636Rat
1563454Acod1aconitate decarboxylase 1157987181979881101Rat
41255204LOC120097311U6 spliceosomal RNA157988191979882023Rat
11512925LOC108352966uncharacterized LOC108352966157988308779886189Rat
1306965Cln5CLN5, intracellular trafficking protein157989357379903438Rat
1305660Fbxl3F-box and leucine-rich repeat protein 3157990679579926678Rat
1312048Mycbp2MYC binding protein 2157993735480175432Rat
11487989LOC108352958cytochrome c, somatic pseudogene158009335680096114Rat
11410085LOC108352959uncharacterized LOC108352959158017539580194897Rat
7615992LOC102550034uncharacterized LOC102550034158025787180259789Rat
6500878LOC100909907uncharacterized LOC100909907158029136880301194Rat
40932818LOC120097171uncharacterized LOC120097171158030998280321557Rat
1305102Scelsciellin158033966180456546Rat
11361310LOC10835304560S ribosomal protein L29 pseudogene158047350280473993Rat
1308626Slain1SLAIN motif family, member 1158048281880542461Rat
2536Ednrbendothelin receptor type B158064083980672115Rat
7751243LOC102550182uncharacterized LOC102550182158067233480695485Rat
41022028LOC120097213small nucleolar RNA SNORD113/SNORD114 family158092711780927199Rat
7742907LOC102550315uncharacterized LOC102550315158097601180978272Rat
620074Pou4f1POU class 4 homeobox 1158125371481260057Rat
1564706Obi1ORC ubiquitin ligase 1158126941381308734Rat
41131751Rps18-ps8ribosomal protein S18, pseudogene 8158133040181331061Rat
41397731LOC120097316U6 spliceosomal RNA158137324981373355Rat
41029165LOC120097236small nucleolar RNA SNORA17158141609781416227Rat
7625858LOC102550655uncharacterized LOC102550655158168480081693102Rat
7666955LOC102550758uncharacterized LOC102550758158169622481700611Rat
1592109Asnsd1-ps1asparagine synthetase domain containing 1, pseudogene 1158173608781737952Rat
41148836LOC120097260small nucleolar RNA SNORA17158175643981756561Rat
11452914LOC108352963uncharacterized LOC108352963158179293381816324Rat
1308297Rbm26RNA binding motif protein 26158188478381964245Rat
41054335Rps11-ps8ribosomal protein S11, pseudogene 8158196856981971604Rat
41265548LOC120097069ATP synthase subunit g, mitochondrial-like158197168381973581Rat
41304945LOC120097070uncharacterized LOC120097070158201298382033164Rat
1309716Ndfip2Nedd4 family interacting protein 2158203236682087043Rat
41252070Trnap-agg90transfer RNA proline (anticodon AGG) 90158207672882076800Rat
2319992Rpl9-ps14ribosomal protein L9, pseudogene 14158220537682205981Rat
1592131Tceal8-ps1transcription elongation factor A like 8, pseudogene 1158232682782327275Rat
2323417Tra2b-ps6transformer 2 beta, pseudogene 6158249735882498715Rat
41035228LOC120096902uncharacterized LOC120096902158254978282551605Rat
1311472Spry2sprouty RTK signaling antagonist 2158269229182697408Rat
1565615Trim52tripartite motif-containing 52158288623782924611Rat
11402272LOC108353046protein transport protein Sec61 subunit gamma pseudogene158300188783002135Rat
1593227Ldha-ps2lactate dehydrogenase A, pseudogene 2158316576883173084Rat
11362115LOC108352964uncharacterized LOC108352964158319152783263790Rat
41159086LOC120097072uncharacterized LOC120097072158331386583364030Rat
41071279LOC120097270small nucleolar RNA SNORA17158355395883554033Rat
41029775LOC120097309U6 spliceosomal RNA158379931683799420Rat
11393005LOC108353047uncharacterized LOC108353047158433751184349331Rat
2323174Psmd8-ps2proteasome 26S subunit, non-ATPase 8, pseudogene 2158440878284410255Rat
41315848LOC120097074uncharacterized LOC120097074158454660484561746Rat
11489075Ervk-21l3endogenous retrovirus group K member 21 Env polyprotein-like 3158457319084581734Rat
2323017LOC100363428PCNA-associated factor-like158461031484612236Rat
9187193Ftl1l3ferritin light chain 1 like 3158483465984835093Rat
7590644Gapdh-ps105Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 105158509422085095216Rat
7536491Envl-ps8MLV-related proviral Env polyprotein-like, pseudogene 8158533635685338410Rat
41266332LOC120097278U2 spliceosomal RNA158537843785378563Rat
1308858Slitrk1SLIT and NTRK-like family, member 1158572325285727290Rat
2319521Apool-ps2apolipoprotein O-like, pseudogene 2158661594886617012Rat
41341524LOC120097269small nucleolar RNA SNORA17158675373586753851Rat
2323641Hnrnpa1-ps27heterogeneous nuclear ribonucleoprotein A1, pseudogene 27158737599687415696Rat
1306550Slitrk6SLIT and NTRK-like family, member 6158756350687570125Rat
2319369Wdr12-ps2WD repeat domain 12, pseudogene 2158769675987698451Rat
41022417Eif4a2-ps1eukaryotic translation initiation factor 4A2, pseudogene 1158795316987957830Rat
41380823St13-ps4ST13, Hsp70 interacting protein, pseudogene 4158820212788210457Rat
11455629LOC108352970uncharacterized LOC108352970158821293388334191Rat
41352702LOC120097077uncharacterized LOC120097077158858861588620218Rat
1559833Rpl5-ps10ribosomal protein L5, pseudogene 10158869968988700973Rat
41155398LOC120097076uncharacterized LOC120097076158880934788819173Rat
1310957Slitrk5SLIT and NTRK-like family, member 5158884812388858809Rat
41238556LOC120097315U6 spliceosomal RNA158919629889196401Rat
11513546LOC108352971uncharacterized LOC108352971158930528289472145Rat
41401429Trnaa-agc65transfer RNA alanine (anticodon AGC) 65158973361389733687Rat
1592125C16h19orf44-ps1similar to human chromosome 19 open reading frame 44, pseudogene 1158976300589764127Rat
41301829LOC120097284U2 spliceosomal RNA159003149590031677Rat
11467873Sec61gl3SEC61 translocon subunit gamma like 3159016860990169004Rat
2316379Vom1r-ps104vomeronasal 1 receptor pseudogene 104159064415390645034Rat
1592124Nsa2-ps8NSA2 ribosome biogenesis factor, pseudogene 8159091718590918020Rat
7613297LOC102547440uncharacterized LOC102547440159096273691056107Rat
41039265LOC120097078uncharacterized LOC120097078159105624391080155Rat
11501014LOC108352972uncharacterized LOC108352972159117279191220830Rat
41010480LOC120097305U6 spliceosomal RNA159119039091190496Rat
7551051LOC102547827uncharacterized LOC102547827159124609691274378Rat
1592123Rps11-ps11ribosomal protein S11, pseudogene 11159145907091459609Rat
11510082LOC10835301240S ribosomal protein S17 pseudogene159175115591760651Rat
41046097LOC120097080uncharacterized LOC120097080159200549392016267Rat
2325600Mir17microRNA 17159218062992180712Rat
2325396Mir18amicroRNA 18a159218076592180860Rat
2325462Mir19amicroRNA 19a159218091292180993Rat
2325401Mir20amicroRNA 20a159218108492181168Rat
2325433Mir19b1microRNA 19b-1159218121492181300Rat
2325390Mir92a1microRNA 92a-1159218133692181413Rat
1308835Gpc5glypican 5159220727593644054Rat
7644006LOC102548462uncharacterized LOC102548462159221026192241147Rat
7517571LOC10254836940S ribosomal protein S16-like159225976392260218Rat
41229299LOC120097209small nucleolar RNA SNORA70159341777793417911Rat
6488688LOC10091213260S ribosomal protein L10-like159341778893418406Rat
41338783LOC120097306U6 spliceosomal RNA159350534093505446Rat
1593308Gpc6glypican 6159403021895027883Rat
41007823LOC120097177uncharacterized LOC120097177159410394094117928Rat
9231101Tmem11-ps1transmembrane protein 11, pseudogene 1159444922194450151Rat
11394812LOC10835302940S ribosomal protein S6 pseudogene159448741794488169Rat
9449268LOC103693782uncharacterized LOC103693782159453665594540278Rat
1564975Dctdopachrome tautomerase159506200695100863Rat
7620398LOC102548872uncharacterized LOC102548872159511475295122461Rat
7735776LOC102548945uncharacterized LOC102548945159515310795163012Rat
11492158Trnaf-gaa5transfer RNA phenylalanine (anticodon GAA) 5159515332395153395Rat
1306544TgdsTDP-glucose 4,6-dehydratase159517506495195555Rat
1359193Gpr180G protein-coupled receptor 180159519578295224955Rat
1304724Sox21SRY-box transcription factor 21159529242995296024Rat
7654866LOC102549101uncharacterized LOC102549101159535610895360987Rat
40937839LOC120097261small nucleolar RNA SNORA17159536277595362881Rat
9095740LOC103693790uncharacterized LOC103693790159539505695417585Rat
620266Abcc4ATP binding cassette subfamily C member 4159554118695774898Rat
41363845LOC120097318U6 spliceosomal RNA159564706895647171Rat
41192109LOC120097081uncharacterized LOC120097081159566944695671421Rat
41059821LOC120097082uncharacterized LOC120097082159584002795844074Rat
41163671LOC120097255small nucleolar RNA SNORA17159584439295844525Rat
1308027Cldn10claudin 10159586278595954526Rat
1307701Dzip1DAZ interacting zinc finger protein 1159595632996009994Rat
708518Dnajc3DnaJ heat shock protein family (Hsp40) member C3159602560596068585Rat
41023110S100a10-ps1S100 calcium binding protein A10, pseudogene 1159602997896030291Rat
1563520Uggt2UDP-glucose glycoprotein glucosyltransferase 2159607455796239365Rat
41032975LOC120097083uncharacterized LOC120097083159623935996242484Rat
1305888Hs6st3heparan sulfate 6-O-sulfotransferase 3159628150297000804Rat
41303432LOC120097180uncharacterized LOC120097180159635699596381188Rat
41340417LOC120097294U6 spliceosomal RNA159668169196681797Rat
7499911LOC102546571uncharacterized LOC102546571159674755696802385Rat
41031812LOC120097179uncharacterized LOC120097179159694132296951978Rat
11416357LOC108352977uncharacterized LOC108352977159704529097048825Rat
1592106Gapdhl5glyceraldehyde-3-phosphate dehydrogenase like 5159712898497129907Rat
1594175Zcchc9-ps1zinc finger CCHC-type containing 9, pseudogene 1159714046097141352Rat
1303155Oxgr1oxoglutarate receptor 1159714594797146960Rat
11433702LOC108352979uncharacterized LOC108352979159714828597155674Rat
41241680LOC120097084uncharacterized LOC120097084159722963997238607Rat
7563047LOC102547244uncharacterized LOC102547244159726669697271473Rat
7609495LOC102551086uncharacterized LOC102551086159729515697300575Rat
41353381LOC120097085uncharacterized LOC120097085159730884897313364Rat
1591755Mbnl2muscleblind-like splicing regulator 2159738527897542924Rat
40955435LOC120097086uncharacterized LOC120097086159747272197483347Rat
41062514LOC120097087uncharacterized LOC120097087159751874297528413Rat
41347773LOC120097088uncharacterized LOC120097088159759071997594836Rat
620590Rap2aRAP2A, member of RAS oncogene family159759684897597338Rat
41052703LOC120097090uncharacterized LOC120097090159768577697687881Rat
11423500LOC108352981uncharacterized LOC108352981159780958397827270Rat
1308715Ipo5importin 5159799075598041074Rat
2323549Rps7-ps12ribosomal protein S7, pseudogene 12159806191398062536Rat
6501347LOC100909886uncharacterized LOC100909886159809105498094498Rat
1305346Farp1FERM, ARH/RhoGEF and pleckstrin domain protein 1159812430498363299Rat
1561742Stk24serine/threonine kinase 24159836370798458940Rat
41131757LOC120097091uncharacterized LOC120097091159851081998516020Rat
621736Slc15a1solute carrier family 15 member 1159853764198582544Rat
9107661Lnc004long non-coding RNA 004159854437898555224Rat
629617Dock9dedicator of cytokinesis 9159861151898883306Rat
41110278LOC120097092uncharacterized LOC120097092159862478398629732Rat
1311689Ubac2UBA domain containing 2159896013999107795Rat
1304889Gpr18G protein-coupled receptor 18159899742799001177Rat
1598095Gpr183G protein-coupled receptor 183159903776499050550Rat
11392609LOC108352982uncharacterized LOC108352982159909718899123189Rat
1588172Timm8a2translocase of inner mitochondrial membrane 8A2159912337499131097Rat
1359230Tm9sf2transmembrane 9 superfamily member 2159920155699254054Rat
7727799Fkbp3-ps2FKBP prolyl isomerase 3, pseudogene 2159923137999232348Rat
1304615Clyblcitramalyl-CoA lyase159928364499505697Rat
7732154LOC102555437uncharacterized LOC102555437159941114099411942Rat
41169861LOC120097095uncharacterized LOC120097095159946998299552531Rat
41114645LOC120097198U6 spliceosomal RNA159949104599491148Rat
1310160Zic5Zic family member 5159955828599567023Rat
41206390LOC120093115uncharacterized LOC120093115159957167099575937Rat
1311174Zic2Zic family member 2159957669799581522Rat
1585863LOC680926similar to Preli159959173699597729Rat
1593223Rpl24-ps6ribosomal protein L24, pseudogene 6159960150899602127Rat
3264Pccapropionyl-CoA carboxylase subunit alpha159962795599969555Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10504D15Mco2226158064042880640727Ratregion
10504D15Mco2226158064050180640727Ratregion
33820D15Mit6210159136585891366070Ratregion
34160D15Mgh5108159501812095018228Ratregion
34162D15Mgh6218159584030895840528Ratregion
34222D15Mgh8139157369051873690657Ratregion
34357D15Mgh4106157630609976306205Ratregion
34409D15Mgh9158158226252082262678Ratregion
36045D15Rat28155159934721999347374Ratregion
36149D15Rat26147159234692692347073Ratregion
37534D15Rat49114159731991197320025Ratregion
37584D15Rat71197157832994278330139Ratregion
35230D15Rat22146157369906973699215Ratregion
35321D15Rat27138159904314899043291Ratregion
35497D15Rat25154159300474493004898Ratregion
37014D15Rat24130159444176894441898Ratregion
37086D15Rat23138157600356976003707Ratregion
38106D15Rat50205159859654598596747Ratregion
38178D15Rat63176159979407199794247Ratregion
40490D15Rat127248159513767995137927Ratregion
40516D15Rat106214159828795598288169Ratregion
40106D15Rat102153159008859190088744Ratregion
40312D15Rat100127158237185882371986Ratregion
39324D15Rat51236159438973094389966Ratregion
39524D15Rat98136157369906973699205Ratregion
39570D15Rat104237159416388094164117Ratregion
41302D15Rat99145157530007875300223Ratregion
43058D15Rat154233158257684382577076Ratregion
43059D15Rat155240159303357493033814Ratregion
43060D15Rat156229159303357493033803Ratregion
43061D15Rat158124159734106197341189Ratregion
43062D15Rat128246159749187197492117Ratregion
43063D15Rat157217159948423399484450Ratregion
42408D15Rat166143157780480477804947Ratregion
41748D15Rat126244157544863775448881Ratregion
44552D9Wox21136158873042688730477Ratregion
44552D9Wox21136158887494088874993Ratregion
43400D15Got96132158924782489247958Ratregion
60119D15Got78207157750183977502046Ratregion
60120D15Got80140157718524377185383Ratregion
60122D15Got97205159955781699558021Ratregion
60088D15Got114155159881462698814775Ratregion
45276D15Got76216157433206474332282Ratregion
45277D15Got74167157446214974462316Ratregion
45278D15Got77288157568115575681443Ratregion
45281D15Got75171157490768274907853Ratregion
45283D15Got79171158405677584056946Ratregion
45284D15Got81277158465544784655722Ratregion
45285D15Got82165158414198884142153Ratregion
45286D15Got83247158620456686204813Ratregion
45287D15Got8679158992367789923756Ratregion
45288D15Got93144158849997588500119Ratregion
45289D15Got84148158882144788821595Ratregion
45290D15Got85274159283353592833809Ratregion
45291D15Got90244159431851394318757Ratregion
45292D15Got89160158859656688596726Ratregion
45294D15Got91209159593313795933345Ratregion
45295D15Got92292159661393196614225Ratregion
45296D15Got95163159593318795933350Ratregion
45297D15Got94137159805086098050997Ratregion
45298D15Got113154159814430598144459Ratregion
45299D15Got99120159960428599604407Ratregion
625772D2Got189217158230919982309416Ratregion
62449D15Uia3168158057737880577545Ratregion
66633D15Mco3190158064555480645729Ratregion
1578852D10Chm22221159446336194463582Ratregion
1629313D15Wox13248158064814780648395Ratregion
1641365D15Got214112157806114278061254Ratregion
1639818D15Got216163158064042880640789Ratregion
1639818D15Got216163158064062680640789Ratregion
1640262D15Got24191159688924496889335Ratregion
1640394D15Ulb3286158064656680646850Ratregion
1638133D15Got221171157833002278330193Ratregion
1634535D15Got226138157708641477086552Ratregion
7191260S100a10350159602989796030246Ratregion
5035855PMC24270P1212158064337980643591Ratregion
5038704AU01771997158190911481909210Ratregion
5038950RH127426245157578738475787629Ratregion
5036549UniSTS:144841151159958083399580984Ratregion
5036675AU048835247158549752785497774Ratregion
5036967AU049781228158377184783772075Ratregion
5037107RH48488129159837232498372822Ratregion
5033871RH140431144158884516188845305Ratregion
7206226Hs6st3190159700025497000444Ratregion
5028817RH142443151159862446598625020Ratregion
5026352RH131875203157990867379908876Ratregion
5034357RH44769264158269691382697177Ratregion
5029169RH143776149159570976095709909Ratregion
5029225RH143991149158269275582692904Ratregion
5034750BI276836229157990276879902997Ratregion
5034828AI408540171159899746998997640Ratregion
5026766RH133447207159522471695224923Ratregion
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5032417AI849185129159754016897540297Ratregion
5032559SGC38389289159754260897542897Ratregion
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5024958S100a10518159602980196030319Ratregion
5025476RH128467193159602987396030066Ratregion
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5028563AI182278290157452820674528496Ratregion
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5056029RH144142110159520180595201915Ratregion
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5053111RH142460162159752056697520728Ratregion
5050450RH134063201159760307197603273Ratregion
5057804BI277150154157845202278452175Ratregion
5052733RH142241149159754267297542822Ratregion
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5050372RH134018181158118876381188944Ratregion
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5054239RH143110115158125549481255609Ratregion
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5044056RH130384181159803923398039872Ratregion
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5076344RH139121156159832718498327340Ratregion
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5078452RH140351157157992773179927888Ratregion
5080000RH141325188159502410995024297Ratregion
5078212RH140209180158064089280641072Ratregion
5078932RH140635220159754028497540504Ratregion
5078612RH14044498157724749677247594Ratregion
5079050RH140705182158064157280641754Ratregion
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5071464RH135097219159502435395024572Ratregion
5074844RH138251164159761707597617239Ratregion
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5066656AU048228294159279004592790330Ratregion
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5063950BE120307160159925405099254210Ratregion
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5065224BE121229179157982552979825708Ratregion
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5066078BF41331992157872787378727965Ratregion
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5064548BF399357153159511381395113966Ratregion
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5066242PMC125354P1274158125780481258078Ratregion
5061192BI293372220157591186275912082Ratregion
5064768BF41160396159753000497530100Ratregion
5061354BF396296180158125397281254152Ratregion
5064816BE108573153157475047674750629Ratregion
5064824BF405158124158885593588856059Ratregion
5066560AU048285121158053914980539272Ratregion
5061566BF40204998159296904892969146Ratregion
5084088AI408351167157980014679800313Ratregion
5084308AA848951214159861838598618599Ratregion
5086987BE107531150159824078198240931Ratregion
5082519BE119601151158029466780294818Ratregion
5088054Pou4f178158125733781257415Ratregion
5088223AU048440267157603875276039017Ratregion
5083385AA818970180158067093980671119Ratregion
5090001AU049491154157604230376042457Ratregion
5084390AI101498196158860056088600756Ratregion
5081885BF415208181158208604282086223Ratregion
5081887BE118647167159434973394349900Ratregion
5081935BE118787173157457124774571420Ratregion
5082039BF415743115159224162192241736Ratregion
5082093BF409444103159577901995779122Ratregion
5084890AI009239220157990952479909744Ratregion
5082373BE119291153159700058197000734Ratregion
5088393AU048543289157695844176958730Ratregion
5085276BM390056201157849499278495193Ratregion
5085276BM390056201157849499278495193Ratregion
5090223AU049623244157627251776272763Ratregion
5084660AI178492187157990648779906674Ratregion
5086345BM386386216157993907179939287Ratregion
5081038RH141929180157980337779803557Ratregion
5084876AI229437182159821597898216160Ratregion
5086455BE106320189159744051897440707Ratregion
5086727AI008211192157873578778735979Ratregion
5086766BE107302180157477310074773280Ratregion
5086823BE107383169159218337192183540Ratregion
5503222UniSTS:237237170157606743676067606Ratregion
5503566D6S2838535158158943581589970Ratregion
5503770UniSTS:470675153158125777681257929Ratregion
5503873EDNRB-21429158064854380649972Ratregion
5503658UniSTS:465489164158125776581257929Ratregion
5504352D13S1087E120157452979374529913Ratregion
5504316D13S865E207158572383685724043Ratregion
5505990UniSTS:496749102159958039599580498Ratregion
5505988UniSTS:496750103159956075999560862Ratregion
5506171AFM350VD1438159253776492538202Ratregion
5506755G45161168159681851996818689Ratregion
5506511UniSTS:276144998158125878681259784Ratregion
5507301fc01e02.x10159927769199278371Ratregion
5507301fc01e02.x10159927771799278371Ratregion
5502287RH12429595159924549699245591Ratregion
5502780DCT515159508864195089156Ratregion
5502782GPC6115159403094294031057Ratregion
5502784TBC1D4137157826429678264433Ratregion
5500521RH135852132159754059797540729Ratregion
5500561RH136003215157663435576634570Ratregion
5503678UniSTS:466092309159957990899580217Ratregion
5501476D5S6800159361356293614912Ratregion
5501476D5S6800159361392593614912Ratregion
5501872MARC_16477-16478:1019839220:10158193152781931612Ratregion
5501872MARC_16477-16478:1019839220:10158193152781932211Ratregion
5502263C76941205159803763798039268Ratregion
5502525RH12519185159754071897540803Ratregion
5502639RH126066701159803920898039909Ratregion
5502778DACH1219157452822074528439Ratregion
5502459RH124908156159602991796030073Ratregion
5502607RH125510154159602991996030073Ratregion
5502527RH125194171157998400579984176Ratregion
152025252rs645279520158625708586257085Ratregion
Position Markers

Flank 1: (D15Mgh8)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21573,690,518 - 73,690,657 (+)MAPPER
Rnor_6.01581,255,292 - 81,255,430NCBI
Rnor_5.01584,794,264 - 84,794,402UniSTS
RGSC_v3.41580,361,961 - 80,362,100RGD
RGSC_v3.41580,361,962 - 80,362,100UniSTS
RGSC_v3.11580,377,742 - 80,377,880RGD
Celera1572,959,866 - 72,960,004UniSTS
RH 3.4 MapX349.81UniSTS
RH 3.4 MapX349.81RGD
RH 2.0 Map21234.4RGD
SHRSP x BN Map1543.6598RGD
FHH x ACI Map1559.21RGD
Cytogenetic Map15 RGD
Peak: (D15Rat63)
Rat AssemblyChrPosition (strand)Source
GRCr815106,200,699 - 106,200,875 (+)Marker Load Pipeline
mRatBN7.21599,794,071 - 99,794,247 (+)MAPPER
Rnor_6.015109,133,729 - 109,133,904NCBI
Rnor_5.015112,515,664 - 112,515,839UniSTS
RGSC_v3.415107,849,473 - 107,849,649RGD
RGSC_v3.415107,849,474 - 107,849,649UniSTS
RGSC_v3.115107,865,254 - 107,865,429RGD
Celera1598,564,878 - 98,565,053UniSTS
RH 3.4 Map15710.8UniSTS
RH 3.4 Map15710.8RGD
RH 2.0 Map15611.6RGD
FHH x ACI Map1573.9699RGD
Cytogenetic Map15q25UniSTS
Flank 2: (D15Rat63)
Rat AssemblyChrPosition (strand)Source
GRCr815106,200,699 - 106,200,875 (+)Marker Load Pipeline
mRatBN7.21599,794,071 - 99,794,247 (+)MAPPER
Rnor_6.015109,133,729 - 109,133,904NCBI
Rnor_5.015112,515,664 - 112,515,839UniSTS
RGSC_v3.415107,849,473 - 107,849,649RGD
RGSC_v3.415107,849,474 - 107,849,649UniSTS
RGSC_v3.115107,865,254 - 107,865,429RGD
Celera1598,564,878 - 98,565,053UniSTS
RH 3.4 Map15710.8UniSTS
RH 3.4 Map15710.8RGD
RH 2.0 Map15611.6RGD
FHH x ACI Map1573.9699RGD
Cytogenetic Map15q25UniSTS


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1575788062101769107Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1568327165100062518Rat
1300118Bp190Blood pressure QTL 1902.94arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)158226252098288169Rat
1358354Srcrt5Stress Responsive Cort QTL 53.38blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)159815000199043291Rat
724545Niddm54Non-insulin dependent diabetes mellitus QTL 540.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)155079449473699215Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1576306099101769107Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1300120Kidm7Kidney mass QTL 73.55kidney mass (VT:0002707)left kidney wet weight to body weight ratio (CMO:0001954)158226252098288169Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
724548Niddm55Non-insulin dependent diabetes mellitus QTL 550.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)156832736073699069Rat
631516Gluco31Glucose level QTL 317blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)155559608995018120Rat
1581519Cm59Cardiac mass QTL 592.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)158885347095840528Rat
1331724Bp223Blood pressure QTL 2233.53715arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)157369051895018228Rat
2317050Aia24Adjuvant induced arthritis QTL 242.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)155284790873690657Rat
2313080Bss65Bone structure and strength QTL 653.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)156099046873690657Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1575788062101769107Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1567588667101769107Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
61477Aia4Adjuvant induced arthritis QTL 43joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)155559608991365858Rat
70182BpQTLcluster12Blood pressure QTL cluster 123.53arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)157369065795018120Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)152788577486257085Rat
1581555Eae19Experimental allergic encephalomyelitis QTL 194.7nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)157630609990088744Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1558156477101769107Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)153405413979054139Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)157369051899794247Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general Multiplicity of poorly differentiated adenocarcinoma 1625309
qtl_general number of animals used: 20 ACI/SegHsd, 20 WF/CrCrli, 20 ACI/SegHsd x WF/CrCrli F1 and 138 F2; software used: MAPMAKER/EXP3.0 and ANOVA 1625309
qtl_general measurement method: lesions were counted and a caliper was used to determine their maximum and minimum diameter 1625309
qtl_general inducing agent: injection of s.c.dimethylhydrazine (20 mg/kg body weight) weekly for 26 weeks 1625309
qtl_general colorectal lesions appeared as spherical or ovoid lesions with a velvety smooth or slightly bossy appearance in the entire length of colon and rectum 1625309