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Gene: Gpc6 (glypican 6) Rattus norvegicus
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Symbol: Gpc6
Name: glypican 6
Description: Involved in regulation of neurotransmitter receptor localization to postsynaptic specialization membrane. Localizes to the glutamatergic synapse. Human ortholog(s) of this gene implicated in omodysplasia. Orthologous to human GPC6 (glypican 6); INTERACTS WITH 6-propyl-2-thiouracil; atrazine; bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Also known as: glypican-6; LOC306163; LOC691984; similar to Glypican-6 precursor; similar to Gpc6 protein
Orthologs:
Homo sapiens (human) : GPC6 (glypican 6)  HGNC  Alliance
Mus musculus (house mouse) : Gpc6 (glypican 6)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Gpc6 (glypican 6)
Pan paniscus (bonobo/pygmy chimpanzee) : GPC6 (glypican 6)
Canis lupus familiaris (dog) : GPC6 (glypican 6)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Gpc6 (glypican 6)
Sus scrofa (pig) : GPC6 (glypican 6)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.015102,164,091 - 103,174,721 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15102,164,751 - 103,170,847 (+)Ensembl
Rnor_5.015105,607,785 - 106,611,654 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415101,763,223 - 102,656,127 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1592,888,323 - 93,881,886 (+)NCBICelera
Cytogenetic Map15q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Gpc6
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1593308
Created: 2006-11-20
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.