Gpr180 (G protein-coupled receptor 180) - Rat Genome Database
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Gene: Gpr180 (G protein-coupled receptor 180) Rattus norvegicus
Analyze
Symbol: Gpr180
Name: G protein-coupled receptor 180
RGD ID: 1359193
Description: Predicted to be involved in G protein-coupled receptor signaling pathway and response to pheromone. Predicted to localize to integral component of membrane. Orthologous to human GPR180 (G protein-coupled receptor 180); INTERACTS WITH bisphenol A; flutamide; triphenyl phosphate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: integral membrane protein GPR180; intimal thickness-related receptor; MGC94555
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21595,195,782 - 95,224,955 (+)NCBI
Rnor_6.0 Ensembl15103,344,476 - 103,369,630 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.015103,340,387 - 103,369,633 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.015106,779,454 - 106,808,159 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415102,931,713 - 102,955,239 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.115102,947,492 - 102,971,018 (+)NCBI
Celera1594,051,859 - 94,075,480 (+)NCBICelera
Cytogenetic Map15q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Additional References at PubMed
PMID:23376485  


Genomics

Comparative Map Data
Gpr180
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21595,195,782 - 95,224,955 (+)NCBI
Rnor_6.0 Ensembl15103,344,476 - 103,369,630 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.015103,340,387 - 103,369,633 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.015106,779,454 - 106,808,159 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415102,931,713 - 102,955,239 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.115102,947,492 - 102,971,018 (+)NCBI
Celera1594,051,859 - 94,075,480 (+)NCBICelera
Cytogenetic Map15q24NCBI
GPR180
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1394,601,857 - 94,634,661 (+)EnsemblGRCh38hg38GRCh38
GRCh381394,601,857 - 94,634,661 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371395,254,111 - 95,286,915 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361394,052,105 - 94,079,947 (+)NCBINCBI36hg18NCBI36
Celera1376,102,074 - 76,129,910 (+)NCBI
Cytogenetic Map13q32.1NCBI
HuRef1375,851,373 - 75,884,161 (+)NCBIHuRef
CHM1_11395,223,550 - 95,256,344 (+)NCBICHM1_1
Gpr180
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914118,374,513 - 118,401,644 (+)NCBIGRCm39mm39
GRCm39 Ensembl14118,374,570 - 118,400,673 (+)Ensembl
GRCm3814118,137,105 - 118,164,232 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14118,137,158 - 118,163,261 (+)EnsemblGRCm38mm10GRCm38
MGSCv3714118,536,349 - 118,563,454 (+)NCBIGRCm37mm9NCBIm37
MGSCv3614117,019,505 - 117,047,938 (+)NCBImm8
Celera14116,691,545 - 116,719,686 (+)NCBICelera
Cytogenetic Map14E4NCBI
Gpr180
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540415,250,532 - 15,275,392 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540415,250,532 - 15,275,381 (-)NCBIChiLan1.0ChiLan1.0
GPR180
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11394,930,657 - 94,964,493 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1394,930,349 - 94,957,032 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01375,774,879 - 75,808,210 (+)NCBIMhudiblu_PPA_v0panPan3
GPR180
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12245,402,127 - 45,434,693 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2245,401,443 - 45,431,483 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2245,188,938 - 45,221,073 (+)NCBI
ROS_Cfam_1.02245,833,299 - 45,865,441 (+)NCBI
UMICH_Zoey_3.12245,486,445 - 45,518,575 (+)NCBI
UNSW_CanFamBas_1.02245,527,326 - 45,559,461 (+)NCBI
UU_Cfam_GSD_1.02245,536,897 - 45,569,057 (+)NCBI
Gpr180
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_ltri_2NW_024404945180,962,446 - 180,990,884 (+)NCBI
SpeTri2.0NW_00493647214,963,022 - 14,989,709 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPR180
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1163,720,058 - 63,769,345 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11163,720,048 - 63,764,720 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21169,826,935 - 69,859,762 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GPR180
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1373,429,949 - 73,460,134 (+)NCBI
ChlSab1.1 Ensembl373,430,165 - 73,458,011 (+)Ensembl
Gpr180
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248791,388,033 - 1,412,727 (+)NCBI

Position Markers
RH144142  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.015103,346,554 - 103,346,663NCBIRnor6.0
Rnor_5.015106,785,080 - 106,785,189UniSTSRnor5.0
RGSC_v3.415102,933,687 - 102,933,796UniSTSRGSC3.4
Celera1594,053,843 - 94,053,952UniSTS
RH 3.4 Map15650.3UniSTS
Cytogenetic Map15q24UniSTS
BF397529  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.015103,367,891 - 103,368,119NCBIRnor6.0
Rnor_5.015106,806,417 - 106,806,645UniSTSRnor5.0
RGSC_v3.415102,955,095 - 102,955,323UniSTSRGSC3.4
Celera1594,075,336 - 94,075,564UniSTS
RH 3.4 Map15651.3UniSTS
Cytogenetic Map15q24UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1526381041106550657Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1526381041106550657Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1526381041106550657Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1543097470106550657Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)1561447766106447766Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1565520564110520564Rat
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1575527634111246239Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1575761024109400896Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)1581255292109133904Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1583947714111246239Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1584050550111246239Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1584050550111246239Rat
1300118Bp190Blood pressure QTL 1902.94arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)1589640684106550657Rat
1300120Kidm7Kidney mass QTL 73.55kidney mass (VT:0002707)left kidney wet weight to body weight ratio (CMO:0001954)1589640684106550657Rat
1581519Cm59Cardiac mass QTL 592.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)1596777066104003672Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:236
Count of miRNA genes:162
Interacting mature miRNAs:181
Transcripts:ENSRNOT00000013329
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 28 15 13 4 13 73 29 36 11
Low 15 42 28 15 28 8 11 1 6 5 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000013329   ⟹   ENSRNOP00000013329
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl15103,344,476 - 103,368,035 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000077047   ⟹   ENSRNOP00000068447
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl15103,344,501 - 103,358,080 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000078103   ⟹   ENSRNOP00000069526
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl15103,344,547 - 103,369,630 (+)Ensembl
RefSeq Acc Id: NM_001006994   ⟹   NP_001006995
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21595,199,816 - 95,223,357 (+)NCBI
Rnor_6.015103,344,476 - 103,368,035 (+)NCBI
Rnor_5.015106,779,454 - 106,808,159 (+)NCBI
RGSC_v3.415102,931,713 - 102,955,239 (+)RGD
Celera1594,051,859 - 94,075,480 (+)RGD
Sequence:
RefSeq Acc Id: XM_006252452   ⟹   XP_006252514
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21595,199,850 - 95,224,955 (+)NCBI
Rnor_6.015103,344,411 - 103,369,633 (+)NCBI
Rnor_5.015106,779,454 - 106,808,159 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252455   ⟹   XP_006252517
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21595,199,754 - 95,224,955 (+)NCBI
Rnor_6.015103,344,408 - 103,369,633 (+)NCBI
Rnor_5.015106,779,454 - 106,808,159 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599719   ⟹   XP_017455208
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21595,195,782 - 95,222,884 (+)NCBI
Rnor_6.015103,340,387 - 103,367,562 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005493740
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21595,199,754 - 95,223,363 (+)NCBI
RefSeq Acc Id: XR_005493741
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21595,199,754 - 95,223,363 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001006995 (Get FASTA)   NCBI Sequence Viewer  
  XP_006252514 (Get FASTA)   NCBI Sequence Viewer  
  XP_006252517 (Get FASTA)   NCBI Sequence Viewer  
  XP_017455208 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH83689 (Get FASTA)   NCBI Sequence Viewer  
  EDM02524 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001006995   ⟸   NM_001006994
- UniProtKB: G3V799 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252517   ⟸   XM_006252455
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006252514   ⟸   XM_006252452
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017455208   ⟸   XM_017599719
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000068447   ⟸   ENSRNOT00000077047
RefSeq Acc Id: ENSRNOP00000069526   ⟸   ENSRNOT00000078103
RefSeq Acc Id: ENSRNOP00000013329   ⟸   ENSRNOT00000013329
Protein Domains
GpcrRhopsn4

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699872
Promoter ID:EPDNEW_R10395
Type:initiation region
Name:Gpr180_1
Description:G protein-coupled receptor 180
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.015103,344,430 - 103,344,490EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359193 AgrOrtholog
Ensembl Genes ENSRNOG00000009766 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000013329 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000068447 UniProtKB/TrEMBL
  ENSRNOP00000069526 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000013329 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000077047 UniProtKB/TrEMBL
  ENSRNOT00000078103 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7189368 IMAGE-MGC_LOAD
InterPro Rhodopsin-like_GPCR_TM_domain UniProtKB/TrEMBL
KEGG Report rno:306165 UniProtKB/TrEMBL
MGC_CLONE MGC:94555 IMAGE-MGC_LOAD
NCBI Gene 306165 ENTREZGENE
Pfam GpcrRhopsn4 UniProtKB/TrEMBL
PhenoGen Gpr180 PhenoGen
UniProt A0A096MKB1_RAT UniProtKB/TrEMBL
  G3V799 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q5XIJ2 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Gpr180  G protein-coupled receptor 180  MGC94555  intimal thickness-related receptor  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-29 MGC94555  intimal thickness-related receptor      Symbol and Name status set to provisional 70820 PROVISIONAL