Aia10 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Aia10 (Adjuvant induced arthritis QTL 10) Rattus norvegicus

Symbol: Aia10
Name: Adjuvant induced arthritis QTL 10
RGD ID: 2317055
Trait: joint integrity trait   (VT:0010548)    
Measurement Type: left rear ankle joint diameter   (CMO:0002149)    
LOD Score: 3.41
P Value: Not Available
Variance: 8.9
Inheritance Type: recessive
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21575,788,062 - 101,769,107RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01584,050,550 - 111,246,239RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01587,444,850 - 114,627,140RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41583,677,810 - 109,758,846RGDRGSC3.4
Cross Type: intercross
Strains Crossed: F344/NCrl LEW/Crl 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
F344/NCrl  (IEA)
LEW/Crl  (IEA)

References

References - curated
1. Bleich A, etal., Inflamm Bowel Dis. 2009 Jun 12;15(12):1794-1802.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2536Ednrbendothelin receptor type B158064083980672115Rat
3264Pccapropionyl-CoA carboxylase subunit alpha159962795599969555Rat
628710Nalcnsodium leak channel, non-selective15100398615100712283Rat
620165Fgf14fibroblast growth factor 1415101045038101679888Rat
708518Dnajc3DnaJ heat shock protein family (Hsp40) member C3159602572996065114Rat
621736Slc15a1solute carrier family 15 member 1159853764198582544Rat
621446Klf5Kruppel-like factor 5157606032076079445Rat
620266Abcc4ATP binding cassette subfamily C member 4159554118695774898Rat
620590Rap2aRAP2A, member of RAS oncogene family159759684897597338Rat
629617Dock9dedicator of cytokinesis 9159861151898883306Rat
620074Pou4f1POU class 4 homeobox 1158125556681260057Rat
1304615Clyblcitramalyl-CoA lyase159928364499505697Rat
1304724Sox21SRY-box transcription factor 21159529227295295316Rat
1304646Dis3DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease157582004075850450Rat
1304889Gpr18G protein-coupled receptor 18159899742799001177Rat
1304748Ggactgamma-glutamylamine cyclotransferase159996924699998343Rat
1305102Scelsciellin158033966180456546Rat
1308858Slitrk1SLIT and NTRK-like family, member 1158572325285727290Rat
1306544TgdsTDP-glucose 4,6-dehydratase159517460795195577Rat
1306550Slitrk6SLIT and NTRK-like family, member 6158756350687570125Rat
1305077Pibf1progesterone immunomodulatory binding factor 1157585038976019711Rat
1305346Farp1FERM, ARH/RhoGEF and pleckstrin domain protein 1159812430498363299Rat
1305888Hs6st3heparan sulfate 6-O-sulfotransferase 3159628150297000804Rat
1308626Slain1SLAIN motif family, member 1158048281880542461Rat
1308027Cldn10claudin 10159586278595954526Rat
1359193Gpr180G protein-coupled receptor 180159519578295224955Rat
1334029Olr1647-psolfactory receptor pseudogene 164715101597962101598240Rat
1311472Spry2sprouty RTK signaling antagonist 2158269231282697408Rat
1312048Mycbp2MYC binding protein 2157993735480175432Rat
1309421Kctd12potassium channel tetramerization domain containing 12157980007779806064Rat
1305660Fbxl3F-box and leucine-rich repeat protein 3157990679579926678Rat
1308715Ipo5importin 5159799075598041074Rat
1308297Rbm26RNA binding motif protein 26158188478381964245Rat
1310957Slitrk5SLIT and NTRK-like family, member 5158884812388858809Rat
1309204Klf12Kruppel-like factor 12157662877877062000Rat
1306965Cln5CLN5, intracellular trafficking protein157989357379903438Rat
1310160Zic5Zic family member 5159955822999567035Rat
1308835Gpc5glypican 5159220727593644054Rat
1307701Dzip1DAZ interacting zinc finger protein 1159595632996009994Rat
1309522Borabora, aurora kinase A activator157579762475835599Rat
1564706Obi1ORC ubiquitin ligase 1158126941381308734Rat
1561196Uchl3ubiquitin C-terminal hydrolase L3157848530478527355Rat
1561742Stk24serine/threonine kinase 24159836370798458940Rat
1311174Zic2Zic family member 2159957669799581522Rat
1309716Ndfip2Nedd4 family interacting protein 2158203236682087043Rat
1560635Itgbl1integrin subunit beta like 115100780184101041734Rat
1311689Ubac2UBA domain containing 2159896013999107795Rat
1359230Tm9sf2transmembrane 9 superfamily member 2159920155699254054Rat
1302984Lmo7LIM domain 7157856702978769833Rat
1560745Commd6COMM domain containing 6157846733378474382Rat
1559833RGD1559833similar to 60S ribosomal protein L5158869968988700973Rat
1303155Oxgr1oxoglutarate receptor 1159714594797146960Rat
1560183Tmtc4transmembrane O-mannosyltransferase targeting cadherins 415100000157100056573Rat
1585863LOC680926similar to Preli159959173699597729Rat
1563520Uggt2UDP-glucose glycoprotein glucosyltransferase 2159607455796239365Rat
1561609Tbc1d4TBC1 domain family, member 4157825603078434168Rat
1564975Dctdopachrome tautomerase159506200695100863Rat
1565615Trim52tripartite motif-containing 52158288623782924611Rat
1563454Acod1aconitate decarboxylase 1157987181979881101Rat
1593227LOC364462similar to L-lactate dehydrogenase A chain (LDH-A) (LDH muscle subunit) (LDH-M)158316576883173084Rat
1592123LOC692049similar to ribosomal protein S11159145907091459609Rat
1592124LOC692048similar to CDK105 protein159091718590918020Rat
1592125LOC692047hypothetical protein LOC692047158976300589764127Rat
1592131LOC692041hypothetical protein LOC692041158232682782327275Rat
1592138LOC692034similar to Aspartate aminotransferase, mitochondrial precursor (Transaminase A) (Glutamate oxaloacetate transaminase 2)157880882278810075Rat
1592139LOC692033similar to ribosomal protein L10a157731037477317398Rat
1592140Mzt1mitotic spindle organizing protein 1157578699275797631Rat
1590925LOC290503similar to Pyruvate kinase isozyme M215101717629101719180Rat
1593308Gpc6glypican 6159403021895027883Rat
1593223LOC364485similar to ribosomal protein L24159960150899602127Rat
1591755Mbnl2muscleblind-like splicing regulator 2159738523897542924Rat
1592106LOC290492similar to glyceraldehyde-3-phosphate dehydrogenase159712898497129907Rat
1592109LOC290453hypothetical LOC290453158173608781737952Rat
1594175LOC680256similar to zinc finger, CCHC domain containing 9159714046097141352Rat
1592110LOC290444similar to eukaryotic translation initiation factor 3, subunit 12157897398078974607Rat
1588172Timm8a2translocase of inner mitochondrial membrane 8A2159912337499131097Rat
1598095Gpr183G protein-coupled receptor 183159903776499050550Rat
2316379Vom1r-ps104vomeronasal 1 receptor pseudogene 104159064415390645034Rat
2319369LOC100361805WD repeat domain 12158769675987698451Rat
2319992LOC100364974hypothetical LOC100364974158220537682205981Rat
2319521LOC100361753apolipoprotein O-like158661594886617012Rat
2323417LOC100363223hypothetical LOC100363223158249735882498715Rat
2320734RGD2320734cytochrome b-c1 complex subunit 9-like157844839778452589Rat
2323017LOC100363428PCNA-associated factor-like158461031484612236Rat
2320932LOC100361028Spi-C transcription factor (Spi-1/PU.1 related)-like157582978175831885Rat
2321007LOC100364453hypothetical LOC100364453157620740576208337Rat
2323174LOC100363369hypothetical LOC100363369158440878284410255Rat
2323549LOC100363190ribosomal protein S7-like159806191398062536Rat
2324281Selenok-ps4selenoprotein K, pseudogene 4157760905977609793Rat
2323641LOC100359553heterogeneous nuclear ribonucleoprotein A1-like158737599687415696Rat
2325390Mir92a1microRNA 92a-1159218133692181413Rat
2325396Mir18amicroRNA 18a159218076592180860Rat
2325401Mir20amicroRNA 20a159218108492181168Rat
2325433Mir19b1microRNA 19b-1159218121492181300Rat
2323955LOC100362823hypothetical LOC100362823157853373578534635Rat
2325462Mir19amicroRNA 19a159218091292180993Rat
2325600Mir17microRNA 17159218062992180712Rat
6488688LOC10091213260S ribosomal protein L10-like159341778893418406Rat
6498975LOC10091037940S ribosomal protein S13-like158228226982285536Rat
6500878LOC100909907uncharacterized LOC100909907158029136880301194Rat
6501347LOC100909886uncharacterized LOC100909886159809105498094498Rat
7502353LOC102546379uncharacterized LOC102546379157967613879677687Rat
7499911LOC102546571uncharacterized LOC102546571159674755696802385Rat
7536491LOC102554612MLV-related proviral Env polyprotein-like158533635685338410Rat
7517571LOC10254836940S ribosomal protein S16-like159225976392260218Rat
7613297LOC102547440uncharacterized LOC102547440159096273691056107Rat
7632669LOC102546300uncharacterized LOC102546300157962671979635335Rat
7653320LOC102553927uncharacterized LOC102553927157627260276347580Rat
7654866LOC102549101uncharacterized LOC102549101159535610895360987Rat
7577763LOC102556284uncharacterized LOC102556284157938945979463606Rat
7625858LOC102550655uncharacterized LOC102550655158168480081693102Rat
7609495LOC102551086uncharacterized LOC102551086159729515697300575Rat
7644006LOC102548462uncharacterized LOC102548462159221026192241147Rat
7615992LOC102550034uncharacterized LOC102550034158025787180259789Rat
7590644LOC102554519glyceraldehyde-3-phosphate dehydrogenase-like158509422085095216Rat
7596678LOC102547141uncharacterized LOC10254714115101484097101504497Rat
7620398LOC102548872uncharacterized LOC102548872159511475295122461Rat
7563047LOC102547244uncharacterized LOC102547244159726669697271473Rat
7551051LOC102547827uncharacterized LOC102547827159124609691274378Rat
7554898LOC102551509uncharacterized LOC102551509158237271682380113Rat
7735776LOC102548945uncharacterized LOC102548945159515310795163012Rat
41054335LOC12009706840S ribosomal protein S11-like158196856981971604Rat
7751243LOC102550182uncharacterized LOC102550182158067233480695485Rat
7705185LOC102548523importin-5-like159469698594698791Rat
7684851LOC102550064uncharacterized LOC102550064159064649290670738Rat
7732154LOC102555437uncharacterized LOC102555437159941114099411942Rat
7666955LOC102550758uncharacterized LOC102550758158169622481700611Rat
7716610LOC102550532uncharacterized LOC102550532159082435890826589Rat
7717526LOC102550250uncharacterized LOC102550250159072108890793587Rat
7742907LOC102550315uncharacterized LOC102550315158097601180978272Rat
7747880LOC102556470uncharacterized LOC102556470158857410588758613Rat
7727799LOC102555195peptidyl-prolyl cis-trans isomerase FKBP3-like159923137999232348Rat
7679581LOC102555382uncharacterized LOC102555382157783604977841407Rat
9095740LOC103693790uncharacterized LOC103693790159539505695417585Rat
9107661Lnc004long non-coding RNA 004159854437898555224Rat
9187193LOC103693842ferritin light chain 1 pseudogene158483465984835093Rat
9194298LOC103693766uncharacterized LOC103693766157664178776658502Rat
9231101LOC103693783transmembrane protein 11, mitochondrial-like159444922194450151Rat
9364271LOC103693771uncharacterized LOC103693771158283879182854514Rat
9449268LOC103693782uncharacterized LOC103693782159453665594540278Rat
11362115LOC108352964uncharacterized LOC108352964158319152783263790Rat
11455629LOC108352970uncharacterized LOC108352970158821293388334191Rat
11433702LOC108352979uncharacterized LOC108352979159714828597155674Rat
11467873LOC108353050protein transport protein Sec61 subunit gamma pseudogene159016860990169004Rat
11470834LOC108352951RING finger and CHY zinc finger domain-containing protein 1 pseudogene157629335476294634Rat
11361310LOC10835304560S ribosomal protein L29 pseudogene158047350280473993Rat
11452914LOC108352963uncharacterized LOC108352963158179293381816324Rat
11394812LOC10835302940S ribosomal protein S6 pseudogene159448741794488169Rat
11416357LOC108352977uncharacterized LOC108352977159704529097048825Rat
11423500LOC108352981uncharacterized LOC108352981159780958397827270Rat
11427239LOC108352956uncharacterized LOC108352956157932711779349197Rat
11376868LOC108352955uncharacterized LOC108352955157749736177507913Rat
11410085LOC108352959uncharacterized LOC108352959158017539580194897Rat
11402272LOC108353046protein transport protein Sec61 subunit gamma pseudogene158300188783002135Rat
11392609LOC108352982uncharacterized LOC108352982159909718899123189Rat
11393005LOC108353047uncharacterized LOC108353047158433751184349331Rat
11501014LOC108352972uncharacterized LOC108352972159117279191220830Rat
11478155LOC108352978uncharacterized LOC108352978159712133797122141Rat
11510082LOC10835301240S ribosomal protein S17 pseudogene159175115591760651Rat
11498208LOC108352954uncharacterized LOC108352954157732467577471131Rat
11512925LOC108352966uncharacterized LOC108352966157988308779886189Rat
11513546LOC108352971uncharacterized LOC108352971158930528289472145Rat
11487989LOC108352958cytochrome c, somatic pseudogene158009335680096114Rat
11489075LOC108352965endogenous retrovirus group K member 21 Env polyprotein-like158457319084581734Rat
11492158Trnaf-gaa5transfer RNA phenylalanine (anticodon GAA) 5159515332395153395Rat
41353381LOC120097085uncharacterized LOC120097085159730884897313364Rat
41354306LOC120097060uncharacterized LOC120097060157633918676341011Rat
41323194LOC120097062uncharacterized LOC120097062157943056379436640Rat
41380823LOC120096996hsc70-interacting protein-like158820212788210457Rat
41324489LOC120097079poly(rC)-binding protein 2-like159118261391186823Rat
41114645LOC120097198U6 spliceosomal RNA159949104599491148Rat
41169861LOC120097095uncharacterized LOC120097095159946998299552531Rat
41170420LOC120097275U6atac minor spliceosomal RNA15100826536100826663Rat
41206390LOC120093115uncharacterized LOC120093115159957167099575937Rat
41252070NEWGENE_40926764transfer RNA proline (anticodon AGG)158207672882076800Rat
41142542LOC120097170uncharacterized LOC120097170158026663180280617Rat
41142702NEWGENE_40926764transfer RNA proline (anticodon AGG)15101209643101209715Rat
41253514LOC120097178uncharacterized LOC120097178159453023894533381Rat
41361993LOC120097243small nucleolar RNA SNORA17157919355479193685Rat
41363119LOC120097317U6 spliceosomal RNA157755266577552761Rat
41363845LOC120097318U6 spliceosomal RNA159564706895647171Rat
41148836LOC120097260small nucleolar RNA SNORA17158175643981756561Rat
41155398LOC120097076uncharacterized LOC120097076158880934788819173Rat
41192109LOC120097081uncharacterized LOC120097081159566944695671421Rat
41265548LOC120097069ATP synthase subunit g, mitochondrial-like158197168381973581Rat
41266332LOC120097278U2 spliceosomal RNA158537843785378563Rat
41270046LOC120097061uncharacterized LOC120097061157847410178480713Rat
41397731LOC120097316U6 spliceosomal RNA158137324981373355Rat
41103500LOC120097287U4 spliceosomal RNA157766526677665430Rat
41159086LOC120097072uncharacterized LOC120097072158331386583364030Rat
41219327LOC120097221small nucleolar RNA SNORA4415100076623100076728Rat
41347773LOC120097088uncharacterized LOC120097088159759071997594836Rat
41071279LOC120097270small nucleolar RNA SNORA17158355395883554033Rat
41129869LOC120097280U2 spliceosomal RNA15101296217101296311Rat
41229299LOC120097209small nucleolar RNA SNORA70159341777793417911Rat
41401429NEWGENE_40934091transfer RNA alanine (anticodon AGC)158973361389733687Rat
41131207LOC120097267U2 spliceosomal RNA157653365876533849Rat
41163671LOC120097255small nucleolar RNA SNORA17159584439295844525Rat
41199290LOC120097089uncharacterized LOC120097089159759511097595948Rat
41131751LOC12009699440S ribosomal protein S18-like158133040181331061Rat
41131757LOC120097091uncharacterized LOC120097091159851081998516020Rat
41352702LOC120097077uncharacterized LOC120097077158858861588620218Rat
41085385LOC120097237small nucleolar RNA SNORA17157719048977190617Rat
41110278LOC120097092uncharacterized LOC120097092159862478398629732Rat
41340417LOC120097294U6 spliceosomal RNA159668169196681797Rat
41341524LOC120097269small nucleolar RNA SNORA17158675373586753851Rat
40954088LOC120097183uncharacterized LOC12009718315101436936101482988Rat
40955435LOC120097086uncharacterized LOC120097086159747272197483347Rat
40932818LOC120097171uncharacterized LOC120097171158030998280321557Rat
40933037LOC120097073uncharacterized LOC120097073158401208884035861Rat
41007823LOC120097177uncharacterized LOC120097177159410394094117928Rat
40937839LOC120097261small nucleolar RNA SNORA17159536277595362881Rat
40990485LOC120097223U1 spliceosomal RNA157612224976122407Rat
41010480LOC120097305U6 spliceosomal RNA159119039091190496Rat
41026113LOC120097264small nucleolar RNA SNORA1715100999787100999905Rat
41077813LOC120097094uncharacterized LOC120097094159896120498971381Rat
41315848LOC120097074uncharacterized LOC120097074158454660484561746Rat
41029165LOC120097236small nucleolar RNA SNORA17158141609781416227Rat
41052703LOC120097090uncharacterized LOC120097090159768577697687881Rat
41029775LOC120097309U6 spliceosomal RNA158379931683799420Rat
41254968LOC120097293U6 spliceosomal RNA157617301176173117Rat
41255204LOC120097311U6 spliceosomal RNA157988191979882023Rat
41136264LOC120097181RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like15101052529101059215Rat
41338783LOC120097306U6 spliceosomal RNA159350534093505446Rat
41031812LOC120097179uncharacterized LOC120097179159694132296951978Rat
41032975LOC120097083uncharacterized LOC120097083159623935996242484Rat
41059821LOC120097082uncharacterized LOC120097082159584002795844074Rat
41035228LOC120096902uncharacterized LOC120096902158254978282551605Rat
41062514LOC120097087uncharacterized LOC120097087159751874297528413Rat
41301829LOC120097284U2 spliceosomal RNA159003149590031677Rat
41334176LOC120096897nucleoside diphosphate kinase B-like157898122778983942Rat
41227491LOC120097063uncharacterized LOC120097063157986770779873636Rat
41303432LOC120097180uncharacterized LOC120097180159635699596381188Rat
41039001LOC120097075uncharacterized LOC120097075158797526887982501Rat
41039265LOC120097078uncharacterized LOC120097078159105624391080155Rat
41304945LOC120097070uncharacterized LOC120097070158201298382033164Rat
41238556LOC120097315U6 spliceosomal RNA158919629889196401Rat
41022028LOC120097213small nucleolar RNA SNORD113/SNORD114 family158092711780927199Rat
41046097LOC120097080uncharacterized LOC120097080159200549392016267Rat
41241680LOC120097084uncharacterized LOC120097084159722963997238607Rat
41022417LOC120096995eukaryotic initiation factor 4A-II-like158795316987957830Rat
41023110LOC120097143protein S100-A10-like159602997896030291Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10504D15Mco2226158064050180640727Ratregion
10504D15Mco2226158064042880640727Ratregion
33820D15Mit6194159136585891366070Ratregion
34160D15Mgh5100159501812095018228Ratregion
34162D15Mgh6211159584030895840528Ratregion
34357D15Mgh4143157630609976306205Ratregion
34409D15Mgh9142158226252082262678Ratregion
36045D15Rat28164159934721999347374Ratregion
36149D15Rat26165159234692692347073Ratregion
37534D15Rat49112159731991197320025Ratregion
37584D15Rat71190157832994278330139Ratregion
35321D15Rat27138159904314899043291Ratregion
35497D15Rat25154159300474493004898Ratregion
37014D15Rat24137159444176894441898Ratregion
37086D15Rat23138157600356976003707Ratregion
38106D15Rat50211159859654598596747Ratregion
38178D15Rat63170159979407199794247Ratregion
40490D15Rat127259159513767995137927Ratregion
40516D15Rat106173159828795598288169Ratregion
40106D15Rat102153159008859190088744Ratregion
40312D15Rat100161158237185882371986Ratregion
39324D15Rat51245159438973094389966Ratregion
39570D15Rat104241159416388094164117Ratregion
41308D15Rat10715115100062374100062518Ratregion
43058D15Rat154229158257684382577076Ratregion
43059D15Rat155238159303357493033814Ratregion
43060D15Rat156229159303357493033803Ratregion
43061D15Rat158124159734106197341189Ratregion
43062D15Rat128245159749187197492117Ratregion
43063D15Rat157228159948423399484450Ratregion
42408D15Rat166144157780480477804947Ratregion
44552D9Wox21136158887494088874993Ratregion
44552D9Wox21136158873042688730477Ratregion
43400D15Got96132158924782489247958Ratregion
60119D15Got78207157750183977502046Ratregion
60120D15Got80140157718524377185383Ratregion
60122D15Got97205159955781699558021Ratregion
60088D15Got114155159881462698814775Ratregion
45283D15Got79171158405677584056946Ratregion
45284D15Got81277158465544784655722Ratregion
45285D15Got82165158414198884142153Ratregion
45286D15Got83247158620456686204813Ratregion
45287D15Got8679158992367789923756Ratregion
45288D15Got93144158849997588500119Ratregion
45289D15Got84148158882144788821595Ratregion
45290D15Got85274159283353592833809Ratregion
45291D15Got90244159431851394318757Ratregion
45292D15Got89160158859656688596726Ratregion
45294D15Got91209159593313795933345Ratregion
45295D15Got92295159661393196614225Ratregion
45296D15Got95163159593318795933350Ratregion
45297D15Got94137159805086098050997Ratregion
45298D15Got113154159814430598144459Ratregion
45299D15Got99120159960428599604407Ratregion
45300D15Got10117815101108115101108293Ratregion
45302D15Got102170159994851899948686Ratregion
625772D2Got189217158230919982309416Ratregion
62449D15Uia3168158057737880577545Ratregion
66633D15Mco3190158064555480645729Ratregion
1578852D10Chm22221159446336194463582Ratregion
1629313D15Wox13248158064814780648395Ratregion
1641365D15Got214112157806114278061254Ratregion
1639818D15Got216165158064062680640789Ratregion
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Position Markers

Peak: (D15Rat106)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21598,287,955 - 98,288,169 (+)MAPPER
Rnor_6.015106,550,444 - 106,550,657NCBI
Rnor_5.015109,944,744 - 109,944,957UniSTS
RGSC_v3.415106,177,703 - 106,177,917RGD
RGSC_v3.415106,177,704 - 106,177,917UniSTS
RGSC_v3.115106,193,484 - 106,193,697RGD
Celera1597,072,390 - 97,072,603UniSTS
RH 3.4 Map15688.5RGD
RH 3.4 Map15688.5UniSTS
SHRSP x BN Map1565.3898UniSTS
SHRSP x BN Map1565.3898RGD
FHH x ACI Map1574.04RGD
Cytogenetic Map15q24-q25UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)153405413979054139Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
61477Aia4Adjuvant induced arthritis QTL 43joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)155559608991365858Rat
631516Gluco31Glucose level QTL 317blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)155559608995018120Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1558156477101769107Rat
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1567588667101769107Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1568327165100062518Rat
1331724Bp223Blood pressure QTL 2233.53715arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)157369051895018228Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)157369051899794247Rat
70182BpQTLcluster12Blood pressure QTL cluster 123.53arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)157369065795018120Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1575788062101769107Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1575788062101769107Rat
1581555Eae19Experimental allergic encephalomyelitis QTL 194.7nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)157630609990088744Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1576306099101769107Rat
1300118Bp190Blood pressure QTL 1902.94arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)158226252098288169Rat
1300120Kidm7Kidney mass QTL 73.55kidney mass (VT:0002707)left kidney wet weight to body weight ratio (CMO:0001954)158226252098288169Rat
1581519Cm59Cardiac mass QTL 592.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)158885347095840528Rat
1358354Srcrt5Stress Responsive Cort QTL 53.38blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)159815000199043291Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general inducing agent: peptidoglycan-polysaccharide (PG-PS) polymers 2316974
qtl_general software used: MapQTL software, Student's t-tests, median tests 2316974
qtl_general measurement method: animals were anesthetized, intestines exposed and 0.05 mL PG-PS suspension was injected; after 24 days these animals were exsanguinated and joint diameter of the left rear ankle measured on 17th day of the treatment 2316974
qtl_general number of animals used: 168 F2 females 2316974