Dzip1 (DAZ interacting zinc finger protein 1) - Rat Genome Database

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Gene: Dzip1 (DAZ interacting zinc finger protein 1) Rattus norvegicus
Analyze
Symbol: Dzip1
Name: DAZ interacting zinc finger protein 1
RGD ID: 1307701
Description: Predicted to enable BBSome binding activity and molecular adaptor activity. Predicted to be involved in several processes, including cilium organization; positive regulation of protein localization to cilium; and protein-containing complex localization to centriolar satellite. Predicted to act upstream of or within several processes, including cytoplasmic sequestering of protein; positive regulation of cilium assembly; and protein localization to cilium. Predicted to be located in several cellular components, including centriolar satellite; ciliary base; and nuclear speck. Predicted to be part of ciliary transition fiber. Predicted to be active in ciliary basal body and cytoplasm. Predicted to colocalize with centriole. Human ortholog(s) of this gene implicated in mitral valve prolapse and spermatogenic failure 47. Orthologous to human DZIP1 (DAZ interacting zinc finger protein 1); INTERACTS WITH 17alpha-ethynylestradiol; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DAZ interacting protein 1; LOC364475; zinc finger protein DZIP1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Dzip1-ps1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21595,956,329 - 96,009,994 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1595,956,398 - 96,010,066 (-)Ensembl
Rnor_6.015104,117,551 - 104,168,574 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15104,117,556 - 104,170,958 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015107,540,953 - 107,592,866 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415103,795,014 - 103,864,850 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.115103,810,987 - 103,880,938 (-)NCBI
Celera1594,806,412 - 94,857,014 (-)NCBICelera
Cytogenetic Map15q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15081113   PMID:16368222   PMID:19852954   PMID:23955340   PMID:27979967   PMID:29487109  


Genomics

Comparative Map Data
Dzip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21595,956,329 - 96,009,994 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1595,956,398 - 96,010,066 (-)Ensembl
Rnor_6.015104,117,551 - 104,168,574 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15104,117,556 - 104,170,958 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015107,540,953 - 107,592,866 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415103,795,014 - 103,864,850 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.115103,810,987 - 103,880,938 (-)NCBI
Celera1594,806,412 - 94,857,014 (-)NCBICelera
Cytogenetic Map15q24NCBI
DZIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381395,578,202 - 95,644,706 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1395,578,202 - 95,644,706 (-)EnsemblGRCh38hg38GRCh38
GRCh371396,230,456 - 96,296,960 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361395,028,457 - 95,094,958 (-)NCBINCBI36hg18NCBI36
Celera1377,078,243 - 77,144,749 (-)NCBI
Cytogenetic Map13q32.1NCBI
HuRef1376,828,210 - 76,894,751 (-)NCBIHuRef
CHM1_11396,200,591 - 96,267,097 (-)NCBICHM1_1
T2T-CHM13v2.01394,782,752 - 94,849,251 (-)NCBI
Dzip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914119,112,927 - 119,162,947 (-)NCBIGRCm39mm39
GRCm39 Ensembl14119,112,932 - 119,162,872 (-)Ensembl
GRCm3814118,875,517 - 118,925,537 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14118,875,520 - 118,925,460 (-)EnsemblGRCm38mm10GRCm38
MGSCv3714119,274,742 - 119,322,389 (-)NCBIGRCm37mm9NCBIm37
MGSCv3614118,010,701 - 118,058,348 (-)NCBImm8
Celera14117,437,607 - 117,475,760 (-)NCBICelera
Cytogenetic Map14E4NCBI
Dzip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540414,428,945 - 14,483,961 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540414,428,026 - 14,481,106 (+)NCBIChiLan1.0ChiLan1.0
DZIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11395,912,026 - 95,975,563 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1395,913,144 - 95,972,799 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01376,757,062 - 76,820,627 (-)NCBIMhudiblu_PPA_v0panPan3
DZIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12246,227,012 - 46,281,224 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2246,227,223 - 46,281,609 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2246,011,377 - 46,063,381 (-)NCBI
ROS_Cfam_1.02246,655,335 - 46,710,221 (-)NCBI
ROS_Cfam_1.0 Ensembl2246,655,342 - 46,710,000 (-)Ensembl
UMICH_Zoey_3.12246,318,751 - 46,370,836 (-)NCBI
UNSW_CanFamBas_1.02246,352,648 - 46,404,663 (-)NCBI
UU_Cfam_GSD_1.02246,358,568 - 46,410,445 (-)NCBI
Dzip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945181,746,610 - 181,810,530 (-)NCBI
SpeTri2.0NW_00493647214,141,502 - 14,205,543 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DZIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11165,147,003 - 65,204,294 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21172,008,827 - 72,066,386 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DZIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1374,381,019 - 74,444,805 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl374,382,136 - 74,441,973 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604630,808,746 - 30,872,309 (-)NCBIVero_WHO_p1.0
Dzip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248792,303,685 - 2,354,319 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248792,301,172 - 2,355,665 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
BE109120  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21595,957,110 - 95,957,260 (+)MAPPERmRatBN7.2
Rnor_6.015104,118,333 - 104,118,482NCBIRnor6.0
Rnor_5.015107,541,735 - 107,541,884UniSTSRnor5.0
RGSC_v3.415103,795,990 - 103,796,139UniSTSRGSC3.4
Celera1594,807,194 - 94,807,343UniSTS
RH 3.4 Map15658.9UniSTS
Cytogenetic Map15q24UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1558156477101769107Rat
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1567588667101769107Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1568327165100062518Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)157369051899794247Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1575788062101769107Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1575788062101769107Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1576306099101769107Rat
1300118Bp190Blood pressure QTL 1902.94arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)158226252098288169Rat
1300120Kidm7Kidney mass QTL 73.55kidney mass (VT:0002707)left kidney wet weight to body weight ratio (CMO:0001954)158226252098288169Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:228
Count of miRNA genes:148
Interacting mature miRNAs:178
Transcripts:ENSRNOT00000038596, ENSRNOT00000038611
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 20 12 4 4 74 21 41 4
Low 1 23 43 35 19 35 8 11 14 7 8
Below cutoff 2 2 2

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_006222058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC089964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000038596   ⟹   ENSRNOP00000038595
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1595,956,398 - 96,007,425 (-)Ensembl
Rnor_6.0 Ensembl15104,118,279 - 104,168,638 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093327
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl15104,168,640 - 104,170,958 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093385   ⟹   ENSRNOP00000076203
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1595,956,398 - 96,007,455 (-)Ensembl
Rnor_6.0 Ensembl15104,117,556 - 104,168,564 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000104201   ⟹   ENSRNOP00000086923
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1595,956,398 - 96,010,066 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000106262   ⟹   ENSRNOP00000082462
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1595,956,398 - 96,010,066 (-)Ensembl
RefSeq Acc Id: XM_006252465   ⟹   XP_006252527
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21595,956,396 - 96,009,994 (-)NCBI
Rnor_6.015104,117,618 - 104,168,572 (-)NCBI
Rnor_5.015107,540,953 - 107,592,866 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006252466   ⟹   XP_006252528
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21595,956,396 - 96,009,974 (-)NCBI
Rnor_6.015104,117,618 - 104,168,574 (-)NCBI
Rnor_5.015107,540,953 - 107,592,866 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039093981   ⟹   XP_038949909
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21595,956,329 - 96,009,977 (-)NCBI
RefSeq Acc Id: XM_039093982   ⟹   XP_038949910
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21595,956,396 - 96,009,977 (-)NCBI
RefSeq Acc Id: XM_039093983   ⟹   XP_038949911
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21595,956,396 - 96,009,977 (-)NCBI
RefSeq Acc Id: XM_039093984   ⟹   XP_038949912
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21595,956,396 - 96,009,980 (-)NCBI
RefSeq Acc Id: XM_039093985   ⟹   XP_038949913
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21595,956,396 - 96,009,980 (-)NCBI
RefSeq Acc Id: XM_039093986   ⟹   XP_038949914
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21595,956,396 - 96,009,974 (-)NCBI
RefSeq Acc Id: XM_039093987   ⟹   XP_038949915
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21595,956,396 - 95,987,846 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_006252527   ⟸   XM_006252465
- Peptide Label: isoform X1
- UniProtKB: A0A1W2Q6C7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252528   ⟸   XM_006252466
- Peptide Label: isoform X5
- UniProtKB: F1MA25 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000038595   ⟸   ENSRNOT00000038596
RefSeq Acc Id: ENSRNOP00000076203   ⟸   ENSRNOT00000093385
RefSeq Acc Id: XP_038949909   ⟸   XM_039093981
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038949912   ⟸   XM_039093984
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038949913   ⟸   XM_039093985
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038949911   ⟸   XM_039093983
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038949910   ⟸   XM_039093982
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038949914   ⟸   XM_039093986
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038949915   ⟸   XM_039093987
- Peptide Label: isoform X6
RefSeq Acc Id: ENSRNOP00000086923   ⟸   ENSRNOT00000104201
RefSeq Acc Id: ENSRNOP00000082462   ⟸   ENSRNOT00000106262

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A1W2Q6C7-F1-model_v2 AlphaFold A0A1W2Q6C7 1-848 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699875
Promoter ID:EPDNEW_R10397
Type:initiation region
Name:Dzip1_2
Description:DAZ interacting zinc finger protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R10398  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.015104,168,662 - 104,168,722EPDNEW
RGD ID:13699884
Promoter ID:EPDNEW_R10398
Type:single initiation site
Name:Dzip1_1
Description:DAZ interacting zinc finger protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R10397  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.015104,171,040 - 104,171,100EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
15 104123438 104123439 G T snv HXB4/IpcvMcwi (2020), SHR/OlalpcvMcwi (2019), HXB2/IpcvMcwi (2019)
15 104123483 104123484 C T snv FHH/EurMcwi (2019)
15 104123500 104123501 G A snv FHH/EurMcwi (2019)
15 104123506 104123507 C T snv FHH/EurMcwi (2019)
15 104123529 104123530 T C snv CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), LE/Stm (RGD), LH/MavRrrc (RGD), MHS/Gib (RGD), WKY/Gcrc (RGD), ACI/EurMcwi (2019), ACI/N (2020), BUF/N (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020)
15 104123568 104123569 T C snv CDR, WN/N (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), WN/N (MCW), FHH/EurMcwi (RGD), LE/Stm (RGD), LH/MavRrrc (RGD), ACI/EurMcwi (2019), ACI/N (2020), BUF/N (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), CDS
15 104123804 104123805 T C snv HXB2/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), SHR/OlalpcvMcwi (2019)
15 104123805 104123806 G T snv SHR/OlalpcvMcwi (2019), HXB2/IpcvMcwi (2019), HXB4/IpcvMcwi (2020)
15 104123806 104123807 T C snv SHR/OlalpcvMcwi (2019), HXB4/IpcvMcwi (2020), HXB2/IpcvMcwi (2019)
15 104123827 104123828 C G snv HXB2/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), SHR/OlalpcvMcwi (2019)
15 104123891 104123892 T G snv HXB2/IpcvMcwi (2019)
15 104123895 104123896 T G snv HXB2/IpcvMcwi (2019)
15 104123896 104123897 T C snv HXB2/IpcvMcwi (2019)
15 104123971 104123972 C T snv HXB2/IpcvMcwi (2019), SHR/OlalpcvMcwi (2019), HXB4/IpcvMcwi (2020)
15 104124493 104124494 T G snv HXB2/IpcvMcwi (2019), SHR/OlalpcvMcwi (2019), HXB4/IpcvMcwi (2020)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307701 AgrOrtholog
BioCyc Gene G2FUF-12432 BioCyc
Ensembl Genes ENSRNOG00000010311 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000038595.6 UniProtKB/TrEMBL
  ENSRNOP00000076203 ENTREZGENE
  ENSRNOP00000076203.2 UniProtKB/TrEMBL
  ENSRNOP00000082462 ENTREZGENE
  ENSRNOP00000082462.1 UniProtKB/TrEMBL
  ENSRNOP00000086923 ENTREZGENE
  ENSRNOP00000086923.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000038596.7 UniProtKB/TrEMBL
  ENSRNOT00000093385 ENTREZGENE
  ENSRNOT00000093385.2 UniProtKB/TrEMBL
  ENSRNOT00000104201 ENTREZGENE
  ENSRNOT00000104201.1 UniProtKB/TrEMBL
  ENSRNOT00000106262 ENTREZGENE
  ENSRNOT00000106262.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7314416 IMAGE-MGC_LOAD
InterPro DZIP1_N UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report rno:364475 UniProtKB/TrEMBL
MGC_CLONE MGC:109326 IMAGE-MGC_LOAD
NCBI Gene 364475 ENTREZGENE
Pfam Dzip-like_N UniProtKB/TrEMBL
PhenoGen Dzip1 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
UniProt A0A1W2Q6C7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZVC1_RAT UniProtKB/TrEMBL
  A0A8I6A380_RAT UniProtKB/TrEMBL
  F1MA25 ENTREZGENE, UniProtKB/TrEMBL
  Q5EB75_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-06-05 Dzip1  DAZ interacting zinc finger protein 1  Dzip1  DAZ interacting protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Dzip1  DAZ interacting protein 1  Dzip1_predicted  DAZ interacting protein 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Dzip1_predicted  DAZ interacting protein 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED