Dzip1 (DAZ interacting zinc finger protein 1) - Rat Genome Database

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Gene: Dzip1 (DAZ interacting zinc finger protein 1) Chinchilla lanigera
Analyze
Symbol: Dzip1
Name: DAZ interacting zinc finger protein 1
RGD ID: 8951786
Description: ENCODES a protein that exhibits BBSome binding (ortholog); molecular adaptor activity (ortholog); INVOLVED IN ciliary basal body organization (ortholog); cilium assembly (ortholog); cilium organization (ortholog); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); holoprosencephaly 5 (ortholog); Myxomatous Mitral Valve Prolapse 3 (ortholog); FOUND IN centriolar satellite (ortholog); centriole (ortholog); centrosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger protein DZIP1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540414,428,945 - 14,483,961 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540414,428,026 - 14,481,106 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Dzip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540414,428,945 - 14,483,961 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540414,428,026 - 14,481,106 (+)NCBIChiLan1.0ChiLan1.0
DZIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381395,578,202 - 95,644,706 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1395,578,202 - 95,644,706 (-)EnsemblGRCh38hg38GRCh38
GRCh371396,230,456 - 96,296,960 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361395,028,457 - 95,094,958 (-)NCBINCBI36hg18NCBI36
Celera1377,078,243 - 77,144,749 (-)NCBI
Cytogenetic Map13q32.1NCBI
HuRef1376,828,210 - 76,894,751 (-)NCBIHuRef
CHM1_11396,200,591 - 96,267,097 (-)NCBICHM1_1
T2T-CHM13v2.01394,782,752 - 94,849,251 (-)NCBI
Dzip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914119,112,927 - 119,162,947 (-)NCBIGRCm39mm39
GRCm39 Ensembl14119,112,932 - 119,162,872 (-)Ensembl
GRCm3814118,875,517 - 118,925,537 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14118,875,520 - 118,925,460 (-)EnsemblGRCm38mm10GRCm38
MGSCv3714119,274,742 - 119,322,389 (-)NCBIGRCm37mm9NCBIm37
MGSCv3614118,010,701 - 118,058,348 (-)NCBImm8
Celera14117,437,607 - 117,475,760 (-)NCBICelera
Cytogenetic Map14E4NCBI
Dzip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21595,956,329 - 96,009,994 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1595,956,398 - 96,010,066 (-)Ensembl
Rnor_6.015104,117,551 - 104,168,574 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15104,117,556 - 104,170,958 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015107,540,953 - 107,592,866 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415103,795,014 - 103,864,850 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.115103,810,987 - 103,880,938 (-)NCBI
Celera1594,806,412 - 94,857,014 (-)NCBICelera
Cytogenetic Map15q24NCBI
DZIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11395,912,026 - 95,975,563 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1395,913,144 - 95,972,799 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01376,757,062 - 76,820,627 (-)NCBIMhudiblu_PPA_v0panPan3
DZIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12246,227,012 - 46,281,224 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2246,227,223 - 46,281,609 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2246,011,377 - 46,063,381 (-)NCBI
ROS_Cfam_1.02246,655,335 - 46,710,221 (-)NCBI
ROS_Cfam_1.0 Ensembl2246,655,342 - 46,710,000 (-)Ensembl
UMICH_Zoey_3.12246,318,751 - 46,370,836 (-)NCBI
UNSW_CanFamBas_1.02246,352,648 - 46,404,663 (-)NCBI
UU_Cfam_GSD_1.02246,358,568 - 46,410,445 (-)NCBI
Dzip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945181,746,610 - 181,810,530 (-)NCBI
SpeTri2.0NW_00493647214,141,502 - 14,205,543 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DZIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1165,147,004 - 65,204,299 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11165,147,003 - 65,204,294 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21172,008,827 - 72,066,386 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DZIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1374,381,019 - 74,444,805 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl374,382,136 - 74,441,973 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604630,808,746 - 30,872,309 (-)NCBIVero_WHO_p1.0
Dzip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248792,303,685 - 2,354,319 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248792,301,172 - 2,355,665 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000003738   ⟹   ENSCLAP00000003664
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540414,428,945 - 14,483,961 (+)Ensembl
RefSeq Acc Id: XM_005374099   ⟹   XP_005374156
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540414,428,026 - 14,481,106 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005374156 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005374156   ⟸   XM_005374099
- Sequence:
RefSeq Acc Id: ENSCLAP00000003664   ⟸   ENSCLAT00000003738
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002611 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000003664 ENTREZGENE
  ENSCLAP00000003664.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000003738 ENTREZGENE
  ENSCLAT00000003738.1 UniProtKB/TrEMBL
InterPro DZIP1_N UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Dzip1 ENTREZGENE
Pfam Dzip-like_N UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
UniProt A0A8C2UUX5_CHILA UniProtKB/TrEMBL