Schws6 QTL Report (Rattus norvegicus) - Rat Genome Database
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QTL: Schws6 (Schwannoma susceptibility QTL 6) Rattus norvegicus

Symbol: Schws6
Name: Schwannoma susceptibility QTL 6
RGD ID: 1576315
Also known as: Mediating schwannoma susceptibility QTL 6; Mss6
Trait: nervous system integrity trait   (VT:0010566)    
Measurement Type: post-insult time of death   (CMO:0002005)    
LOD Score: Not Available
P Value: 0.0069
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01561,447,766 - 106,447,766RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01564,956,643 - 109,956,643RGDRnor5.0
RGSC_v3.41560,849,424 - 105,849,424RGDRGSC3.4
RGSC_v3.11560,865,204 - 105,865,204RGD
Cross Type: Not Available
Strains Crossed: BDIV/Zte BDIX/Zte 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
neurilemmoma  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
BDIV/Zte  (IEA)
BDIX/Zte  (IEA)

References

References - curated
1. Koelsch BU, etal., Int J Cancer. 2006 Jan 1;118(1):108-14.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2536Ednrbendothelin receptor type B158800477588036354Rat
69350Pcdh8protocadherin 8156219646962201498Rat
619721Rgccregulator of cell cycle156155186161564695Rat
727855SetsipSET-like protein158208066782081525Rat
708518Dnajc3DnaJ heat shock protein family (Hsp40) member C315104186918104226236Rat
620176Cnmdchondromodulin156192329161947840Rat
621446Klf5Kruppel-like factor 5158370379683722921Rat
620697Elf1E74 like ETS transcription factor 1156177254461868442Rat
620266Abcc4ATP binding cassette subfamily C member 415103695415103927980Rat
620590Rap2aRAP2A, member of RAS oncogene family15105851543105852033Rat
620033Wbp4WW domain binding protein 4156174598961772516Rat
620074Pou4f1POU class 4 homeobox 1158861825588622712Rat
1304724Sox21SRY-box transcription factor 2115103438674103441405Rat
1304646Dis3DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease158346633083494107Rat
1305086Kbtbd6kelch repeat and BTB domain containing 6156173157461733331Rat
1305102Scelsciellin158768919087820731Rat
1307452Klhl1kelch-like family member 1158027084680714176Rat
1308858Slitrk1SLIT and NTRK-like family, member 1159330338293307420Rat
1306544TgdsTDP-glucose 4,6-dehydratase15103319268103340239Rat
1306550Slitrk6SLIT and NTRK-like family, member 6159550763295514259Rat
1305077Pibf1progesterone immunomodulatory binding factor 1158349411083663202Rat
1306348Pcdh9protocadherin 9157678710877738668Rat
1306441RGD1306441similar to RIKEN cDNA 4921530L21158003779180042342Rat
1304753Pcdh17protocadherin 17156755583567647990Rat
1308772Vwa8von Willebrand factor A domain containing 8156115851061467462Rat
1305346Farp1FERM, ARH/RhoGEF and pleckstrin domain protein 115106375298106625837Rat
1306297Pcdh20protocadherin 20157177277771779033Rat
1305888Hs6st3heparan sulfate 6-O-sulfotransferase 315104448479105254540Rat
1308626Slain1SLAIN motif family, member 1158786283287906472Rat
1311708Olfm4olfactomedin 4156238426362429450Rat
1308027Cldn10claudin 1015104026590104115748Rat
1359193Gpr180G protein-coupled receptor 18015103340387103369633Rat
1311472Spry2sprouty RTK signaling antagonist 2159017276990177823Rat
1312048Mycbp2MYC binding protein 2159367806293901556Rat
1312048Mycbp2MYC binding protein 2158740547287450812Rat
1309421Kctd12potassium channel tetramerization domain containing 12158738463287390627Rat
1305660Fbxl3F-box and leucine-rich repeat protein 3159364730793667395Rat
1307550Sugt1SGT1 homolog, MIS12 kinetochore complex assembly cochaperone156187315861913983Rat
1308715Ipo5importin 515106243110106293326Rat
1308297Rbm26RNA binding motif protein 26158926268389339323Rat
1310957Slitrk5SLIT and NTRK-like family, member 5159681790796826760Rat
1309204Klf12Kruppel-like factor 12158431698684748549Rat
1306965Cln5CLN5, intracellular trafficking protein159363481593644146Rat
1308835Gpc5glypican 515100283131101776838Rat
1307701Dzip1DAZ interacting zinc finger protein 115104117551104168574Rat
1310126Tdrd3tudor domain containing 3157073216470864855Rat
1309522Borabora, aurora kinase A activator158344221783463737Rat
1564706Obi1ORC ubiquitin ligase 1158863208988670325Rat
1559579RGD1559579similar to Ski protein158172874181732824Rat
1561196Uchl3ubiquitin C-terminal hydrolase L3158615362486198127Rat
1559682Ppial4gpeptidylprolyl isomerase A like 4G158157669081577379Rat
1562819RGD1562819similar to Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (P18)158661019986610641Rat
1309716Ndfip2Nedd4 family interacting protein 2158940742689458983Rat
1302984Lmo7LIM domain 7158624291186458512Rat
1560745Commd6COMM domain containing 6158613609686142672Rat
1559833RGD1559833similar to 60S ribosomal protein L5159667056996671884Rat
1560069RGD1560069similar to ribosomal protein L27158257800682581931Rat
1303155Oxgr1oxoglutarate receptor 115105399596105422559Rat
1563520Uggt2UDP-glucose glycoprotein glucosyltransferase 215104235678104405308Rat
1561609Tbc1d4TBC1 domain family, member 4158592797886105829Rat
1584329Mtrf1mitochondrial translation release factor 1156166200061689867Rat
1565438RGD1565438similar to ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g158934799389348449Rat
1564975Dctdopachrome tautomerase15103208174103245033Rat
1584320LOC686244similar to ribosomal protein S24156170140961701844Rat
1584324Naa16N(alpha)-acetyltransferase 16, NatA auxiliary subunit156159705461655665Rat
1565615Trim52tripartite motif-containing 52159036451790388295Rat
1560797RGD1560797similar to glyceraldehyde-3-phosphate dehydrogenase158508742285112505Rat
1563454Acod1aconitate decarboxylase 1159361296893622322Rat
1564564LOC306079similar to RIKEN cDNA 3100001N19156252095362532175Rat
1592157LOC692015similar to cytochrome P450, family 2, subfamily c, polypeptide 66156384753363876306Rat
1593227LOC364462similar to L-lactate dehydrogenase A chain (LDH-A) (LDH muscle subunit) (LDH-M)159064154090648166Rat
1593228LOC364454similar to androgen receptor N-terminal-interacting protein158393493483935754Rat
1592123LOC692049similar to ribosomal protein S11159946521899465776Rat
1592124LOC692048similar to CDK105 protein159892682198928256Rat
1592125LOC692047hypothetical protein LOC692047159768740197688523Rat
1592127LOC692045similar to eukaryotic translation initiation factor 4A2159590990595910562Rat
1592131LOC692041hypothetical protein LOC692041158972883089729199Rat
1592132LOC692040similar to ribosomal protein S13158966587089666356Rat
1592134LOC692038similar to ribosomal protein S11158934502989355717Rat
1592135LOC692037similar to ribosomal protein S18158869192588692627Rat
1592138LOC692034similar to Aspartate aminotransferase, mitochondrial precursor (Transaminase A) (Glutamate oxaloacetate transaminase 2)158649708086498358Rat
1592139LOC692033similar to ribosomal protein L10a158498660685028467Rat
1592140Mzt1mitotic spindle organizing protein 1158342943783442118Rat
1592142LOC692030similar to pescadillo homolog 1, containing BRCT domain158282633582908844Rat
1592145LOC692027similar to family with sequence similarity 60, member A157988698779888846Rat
1592146LOC692026similar to mesenchymal stem cell protein DSC92157900057979001317Rat
1592073Dach1dachshund family transcription factor 1158209500382482272Rat
1592151LOC692021similar to 3-phosphoglycerate dehydrogenase157317942273180954Rat
1592156LOC692016similar to sorbitol dehydrogenase 1156413990464140957Rat
1586012LOC501543similar to basic leucine zipper and W2 domains 1159220837392216081Rat
1593308Gpc6glypican 615102164091103174721Rat
1595676LOC502027similar to Voltage-dependent anion-selective channel protein 1 (VDAC-1) (mVDAC1) (mVDAC5) (Outer mitochondrial membrane protein porin 1) (Plasmalemmal porin)157797641477982201Rat
1595677LOC502026similar to non-POU domain containing, octamer-binding157482548574867513Rat
1591755Mbnl2muscleblind-like splicing regulator 215105640097105797933Rat
1592106LOC290492similar to glyceraldehyde-3-phosphate dehydrogenase15105384418105385451Rat
1592109LOC290453hypothetical LOC290453158911467289116568Rat
1593287Diaph3diaphanous-related formin 3156992850770400077Rat
1594175LOC680256similar to zinc finger, CCHC domain containing 915105395957105397046Rat
1593229LOC364451similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)158266885782670226Rat
1592110LOC290444similar to eukaryotic translation initiation factor 3, subunit 12158660091286601539Rat
1592111LOC290428similar to small nuclear ribonucleoparticle-associated protein158076495280765614Rat
1592113LOC290412similar to Pyruvate kinase isozymes M1/M2 (Pyruvate kinase muscle isozyme)157166494171666594Rat
1590791LOC498555similar to 60S acidic ribosomal protein P2157506728475067724Rat
1597679Calm-ps2calmodulin pseudogene 2156550686665507984Rat
2316379Vom1r-ps104vomeronasal 1 receptor pseudogene 104159864381698644697Rat
2319369LOC100361805WD repeat domain 12159563819695644732Rat
2319992LOC100364974hypothetical LOC100364974158957747789578094Rat
2320118LOC100361447hypothetical LOC100361447157278728572788287Rat
2320163LOC100361402hypothetical LOC100361402157066548670666082Rat
2319521LOC100361753apolipoprotein O-like159456295094563993Rat
2319690LOC100361683cyclin-dependent kinase 4157480876774811660Rat
2323417LOC100363223hypothetical LOC100363223158989830089899025Rat
2320681LOC10036118040S ribosomal protein S17-like156419056164191115Rat
2320734RGD2320734cytochrome b-c1 complex subunit 9-like158612318186123498Rat
2321527LOC100360731SNRPN upstream reading frame protein-like158076450680764769Rat
2323017LOC100363428PCNA-associated factor-like159211460992115676Rat
2321672LOC100360685breast cancer associated 3158014864680149286Rat
2323075LOC100359970poly(rC) binding protein 1-like159919203299193050Rat
2320932LOC100361028Spi-C transcription factor (Spi-1/PU.1 related)-like158347292383474228Rat
2321007LOC100364453hypothetical LOC100364453158384757983848270Rat
2323174LOC100363369hypothetical LOC100363369159188479091885729Rat
2320484LOC100361279hypothetical LOC100361279156635923566359536Rat
2323549LOC100363190ribosomal protein S7-like15106314135106314787Rat
2324281Selenok-ps4selenoprotein K, pseudogene 4158529180485292538Rat
2323641LOC100359553heterogeneous nuclear ribonucleoprotein A1-like159532279095323886Rat
2323849LOC100359444heterogeneous nuclear ribonucleoprotein D-like159433863094359947Rat
2325390Mir92a1microRNA 92a-115100180586100180663Rat
2325396Mir18amicroRNA 18a15100180015100180110Rat
2325401Mir20amicroRNA 20a15100180334100180418Rat
2325433Mir19b1microRNA 19b-115100180464100180550Rat
2323955LOC100362823hypothetical LOC100362823158620424286205466Rat
2325462Mir19amicroRNA 19a15100180162100180243Rat
2325470Mir759microRNA 759156202549462025590Rat
2325600Mir17microRNA 1715100179879100179962Rat
2324592LOC100360244LRRGT00053-like156187256461873406Rat
6488688LOC10091213260S ribosomal protein L10-like15101505377101505823Rat
6485145LOC100912914actin, cytoplasmic 2-like159555073195559457Rat
6501695Kbtbd7kelch repeat and BTB domain containing 7156169204161696506Rat
6498975LOC10091037940S ribosomal protein S13-like158966014289660628Rat
6496491LOC10091076640S ribosomal protein SA-like157126519371278620Rat
6500878LOC100909907uncharacterized LOC100909907158765997287667127Rat
6501347LOC100909886uncharacterized LOC10090988615106342919106346380Rat
6501416LOC10090989560S ribosomal protein L15-like156170730261708299Rat
6501536LOC100909790glutamine synthetase-like156158862361594990Rat
7501055LOC102553928uncharacterized LOC102553928159206709192078490Rat
7502353LOC102546379uncharacterized LOC102546379158726278587264293Rat
7514870LOC102546540MLV-related proviral Env polyprotein-like157406427274066082Rat
7522862LOC102549137uncharacterized LOC102549137158204242282047107Rat
7531625LOC102549194uncharacterized LOC102549194158976658689767747Rat
7497096LOC10255053140S ribosomal protein SA-like156144600261447995Rat
7499911LOC102546571uncharacterized LOC10254657115104999574105007036Rat
7513265LOC102553620uncharacterized LOC102553620159154695191548273Rat
7513817LOC102547891uncharacterized LOC102547891159932971199346059Rat
7536054LOC102553204uncharacterized LOC102553204156247288662490552Rat
7536491LOC102554612MLV-related proviral Env polyprotein-like159292538592927102Rat
7517571LOC10254836940S ribosomal protein S16-like15100303331100303838Rat
7613297LOC102547440uncharacterized LOC102547440159897197199072728Rat
7632669LOC102546300uncharacterized LOC102546300158721585187222414Rat
7651565LOC102546653uncharacterized LOC102546653157429492674307648Rat
7653320LOC102553927uncharacterized LOC102553927158391471283990016Rat
7654866LOC102549101uncharacterized LOC10254910115103504870103507313Rat
7639286LOC102549993uncharacterized LOC102549993159861924798620916Rat
7577763LOC102556284uncharacterized LOC102556284158701690687090954Rat
7625858LOC102550655uncharacterized LOC102550655158905474389062753Rat
7609461LOC102548429glyceraldehyde-3-phosphate dehydrogenase-like158310252783103221Rat
7609495LOC102551086uncharacterized LOC10255108615105549560105564839Rat
7644006LOC102548462uncharacterized LOC10254846215100208893100285666Rat
7615992LOC102550034uncharacterized LOC102550034158762223387625434Rat
7616046LOC102556639uncharacterized LOC10255663915105222801105228242Rat
7592669LOC10255072360S ribosomal protein L17-like156147617261479568Rat
7590644LOC102554519glyceraldehyde-3-phosphate dehydrogenase-like159267778192678706Rat
7590885LOC102553139uncharacterized LOC102553139156244977462466611Rat
7620398LOC102548872uncharacterized LOC10254887215103258798103266844Rat
7543941LOC102551215non-histone chromosomal protein HMG-17-like158219176782194902Rat
7560548LOC102546988uncharacterized LOC102546988159736878697377559Rat
7563047LOC102547244uncharacterized LOC10254724415105467932105530053Rat
7551051LOC102547827uncharacterized LOC102547827159925615799257803Rat
7551641LOC10255613260S ribosomal protein L21-like159600592096006411Rat
7552264LOC102547864uncharacterized LOC102547864157394584173988928Rat
7607858LOC102547865AFG3-like protein 1-like158008420480085836Rat
7554821LOC102546958MLV-related proviral Env polyprotein-like157418590874187788Rat
7554898LOC102551509uncharacterized LOC102551509158977499189781041Rat
7735776LOC102548945uncharacterized LOC10254894515103295296103306960Rat
7735895LOC102553037uncharacterized LOC102553037156231338162383468Rat
7751243LOC102550182uncharacterized LOC102550182158803664388060008Rat
7752722LOC102556356uncharacterized LOC102556356159660669996633652Rat
7673172LOC102549566uncharacterized LOC10254956615105764295105769872Rat
7705185LOC102548523importin-5-like15102828744102831986Rat
7684851LOC102550064uncharacterized LOC102550064159866071098669054Rat
7686929LOC102555054uncharacterized LOC102555054158474987084785357Rat
7712337LOC102554323uncharacterized LOC10255432315104123235104126029Rat
7737711LOC102547176uncharacterized LOC10254717615105513127105520957Rat
7716236LOC102556074uncharacterized LOC102556074159587661995884963Rat
7666955LOC102550758uncharacterized LOC102550758158879904989071484Rat
7716610LOC102550532uncharacterized LOC102550532159878485698833099Rat
7717526LOC102550250uncharacterized LOC102550250159871973298761167Rat
7742907LOC102550315uncharacterized LOC102550315158833952888341022Rat
7718830LOC102554923protein S100-A10-like15104191056104191691Rat
7672387LOC102554138uncharacterized LOC102554138156546420965481580Rat
7702568LOC102552221microfibrillar-associated protein 1-like156180675161815098Rat
7747880LOC102556470uncharacterized LOC102556470159655356296603397Rat
7679581LOC102555382uncharacterized LOC102555382158552426185530368Rat
9095740LOC103693790uncharacterized LOC10369379015103563031103566680Rat
9144322LOC103689974tumor necrosis factor ligand superfamily member 11156206633862097999Rat
9181282LOC103693744uncharacterized LOC103693744156903092969039599Rat
9187193LOC103693842ferritin light chain 1 pseudogene159241752892417962Rat
9158814LOC103693773uncharacterized LOC103693773159671742396736761Rat
9194298LOC103693766uncharacterized LOC103693766158432841384353539Rat
9205700LOC103693880uncharacterized LOC103693880156754336567552989Rat
9272793LOC103693784uncharacterized LOC10369378415102492880102497195Rat
9231101LOC103693783transmembrane protein 11, mitochondrial-like15102578969102587583Rat
9282704LOC103693775uncharacterized LOC103693775159886139398875741Rat
9333309LOC103693748uncharacterized LOC103693748157193931672081857Rat
9334918LOC103693881uncharacterized LOC103693881158438015584386355Rat
9360512LOC103693887uncharacterized LOC103693887159641108796511565Rat
9251708LOC103693886uncharacterized LOC10369388615103392754103397446Rat
9362338LOC103690225uncharacterized LOC103690225159900967999073223Rat
9346826LOC103693802uncharacterized LOC10369380215105963294105984574Rat
9364271LOC103693771uncharacterized LOC103693771159029498490357086Rat
9460260LOC103693801uncharacterized LOC10369380115105798449105803736Rat
9466192LOC103693740cytochrome b-c1 complex subunit 7 pseudogene156616552966165852Rat
9388791LOC103693741uncharacterized LOC103693741156772053667736644Rat
9388800LOC103693772uncharacterized LOC103693772159523020795284872Rat
9394505LOC103693781uncharacterized LOC10369378115102987520102991094Rat
9478553LOC103693884vegetative cell wall protein gp1-like156198368961984519Rat
9401250LOC103693745uncharacterized LOC103693745156903976669056040Rat
9439287LOC103693885uncharacterized LOC103693885159922616599233217Rat
9409882Matr3-ps2matrin 3, pseudogene 2158144342081447415Rat
9449268LOC103693782uncharacterized LOC10369378215102663539102673907Rat
9417113LOC103693761uncharacterized LOC103693761158209500382133254Rat
9417610LOC103693758uncharacterized LOC103693758157988939579959336Rat
9459085LOC103693764uncharacterized LOC103693764158248294282489743Rat
9685073Mir1297microRNA 1297156386113963861212Rat
11369296LOC108352950uncharacterized LOC108352950157025820770264102Rat
11362114LOC108352953glyceraldehyde-3-phosphate dehydrogenase pseudogene158512651285126988Rat
11362115LOC108352964uncharacterized LOC108352964159069379290712502Rat
11362124LOC108352969uncharacterized LOC108352969159513250395149965Rat
11455629LOC108352970uncharacterized LOC108352970159616499896220806Rat
11433702LOC108352979uncharacterized LOC10835297915105406882105412187Rat
11434381LOC108352947uncharacterized LOC108352947156224867662262198Rat
11466167LOC108353044uncharacterized LOC108353044158016134580162190Rat
11467873LOC108353050protein transport protein Sec61 subunit gamma pseudogene159810759498107821Rat
11470834LOC108352951RING finger and CHY zinc finger domain-containing protein 1 pseudogene158393401983936262Rat
11360552LOC108353048uncharacterized LOC108353048159270320892705244Rat
11361310LOC10835304560S ribosomal protein L29 pseudogene158783769187838176Rat
11435685LOC108353051uncharacterized LOC10835305115105440216105444375Rat
11436659LOC108353006ATP synthase subunit d, mitochondrial pseudogene156422282964224081Rat
11438235LOC108353043uncharacterized LOC108353043157924731779248162Rat
11429607LOC108352948uncharacterized LOC108352948156220155962205665Rat
11451904LOC108352980uncharacterized LOC10835298015105500949105511778Rat
11432064LOC108353008endogenous retrovirus group K member 9 Pol protein-like157542181275423634Rat
11452914LOC108352963uncharacterized LOC108352963158917164689176296Rat
11394812LOC10835302940S ribosomal protein S6 pseudogene15102619263102623236Rat
11413332LOC108352975uncharacterized LOC10835297515103928043103932459Rat
11415601LOC108352976protein S100-A10 pseudogene15104188899104191688Rat
11416357LOC108352977uncharacterized LOC10835297715105301183105312118Rat
11423500LOC108352981uncharacterized LOC10835298115106064405106082875Rat
11427239LOC108352956uncharacterized LOC108352956158696370686968620Rat
11376868LOC108352955uncharacterized LOC108352955158518280185192808Rat
11410085LOC108352959uncharacterized LOC108352959158755345587561139Rat
11410098LOC108353007probable 28S rRNA (cytosine-C(5))-methyltransferase pseudogene157126564271270953Rat
11410099LOC108353042uncharacterized LOC108353042157842048878425290Rat
11398925LOC108352973uncharacterized LOC108352973159993755799968945Rat
11388509LOC108353009MLV-related proviral Env polyprotein-like157924945379251664Rat
11379167LOC108352949uncharacterized LOC108352949156756769067588470Rat
11402272LOC108353046protein transport protein Sec61 subunit gamma pseudogene159047959790479983Rat
11379973Trnae-uuc8transfer RNA glutamic acid (anticodon UUC) 8156177265761772728Rat
11392754LOC10835296140S ribosomal protein S18 pseudogene158868821988692683Rat
11393005LOC108353047uncharacterized LOC108353047159180682091819283Rat
11393907LOC108352967cytochrome c, somatic pseudogene159383021593831903Rat
11501014LOC108352972uncharacterized LOC108352972159918182999222787Rat
11519747LOC108352974uncharacterized LOC10835297415103578180103588467Rat
11503401LOC108353011MLV-related proviral Env polyprotein-like159154303191546635Rat
11478155LOC108352978uncharacterized LOC10835297815105376613105377850Rat
11481983LOC108352968uncharacterized LOC108352968159518340595190765Rat
11497845LOC108348240glyceraldehyde-3-phosphate dehydrogenase-like159211570392116609Rat
11510082LOC10835301240S ribosomal protein S17 pseudogene159976203299771423Rat
11498208LOC108352954uncharacterized LOC108352954158512737085156092Rat
11512925LOC108352966uncharacterized LOC108352966159362539993627575Rat
11512934LOC108353010MLV-related proviral Env polyprotein-like158016348180165692Rat
11513546LOC108352971uncharacterized LOC108352971159723647097420593Rat
11494307LOC108352960uncharacterized LOC108352960158768401287691897Rat
11494316LOC108353049endogenous retrovirus group K member 9 Pol protein-like159292178992923180Rat
11483312LOC108353028uncharacterized LOC10835302815100237709100268750Rat
11485972LOC108352962uncharacterized LOC108352962158852348488614286Rat
11486602LOC108352957E3 ubiquitin-protein ligase MYCBP2-like158745413487540810Rat
11518120LOC108352952uncharacterized LOC108352952158435844884367845Rat
11487989LOC108352958cytochrome c, somatic pseudogene158746182187463509Rat
11518631LOC108353041igE-binding protein-like156423136364232343Rat
11489075LOC108352965endogenous retrovirus group K member 21 Env polyprotein-like159207850192086962Rat
11492158Trnaf-gaa5transfer RNA phenylalanine (anticodon GAA) 515103297323103297395Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10504D15Mco2226158800443888004663Ratregion
10504D15Mco2226158800420688004663Ratregion
33820D15Mit6194159937213999372348Ratregion
34160D15Mgh510015103164962103165069Ratregion
34162D15Mgh621115104003455104003672Ratregion
34222D15Mgh8139158125529281255430Ratregion
34357D15Mgh4143158394771483947819Ratregion
34409D15Mgh9142158964068489640841Ratregion
34471D15Mgh3149156259626162596410Ratregion
34471D15Mgh3149156259528162596410Ratregion
36149D15Rat2616515100390296100390442Ratregion
37276D15Rat68132156349893263499071Ratregion
37534D15Rat4911215105575422105575535Ratregion
37584D15Rat71190158600183486002030Ratregion
35230D15Rat22164158126384381263988Ratregion
35497D15Rat2515415101059401101059554Ratregion
37014D15Rat2413715102573998102574127Ratregion
37086D15Rat23138158364706283647199Ratregion
37696D15Rat59208156489802964898252Ratregion
37794D15Rat48200156230117762301382Ratregion
37918D15Rat39236156231502162315262Ratregion
36663D15Rat21159157576102475761216Ratregion
40490D15Rat12725915103281673103281920Ratregion
40554D15Rat93173156356800963568179Ratregion
40106D15Rat102153159802755898027710Ratregion
40312D15Rat100161158977373389773860Ratregion
39192D15Rat47200157383734073837547Ratregion
39324D15Rat5124515102522908102523143Ratregion
39458D15Rat95209157055942070559628Ratregion
39524D15Rat98146158126384381263978Ratregion
39570D15Rat10424115102298523102298759Ratregion
42006D15Arb2219156836650868366737Ratregion
41302D15Rat99159158288663982886783Ratregion
41332D15Rat94171157707214677072316Ratregion
43058D15Rat154229159005092490051156Ratregion
43059D15Rat15523815101088037101088275Ratregion
43060D15Rat15622915101088037101088264Ratregion
43061D15Rat15812415105596549105596676Ratregion
43062D15Rat12824515105746756105747001Ratregion
42407D15Rat151234157591225275913292Ratregion
42408D15Rat166144158548043785480579Ratregion
40882D15Rat97224157903348479033707Ratregion
41010D15Rat96157157256801772568189Ratregion
41708D15Rat125135157011326570113399Ratregion
41748D15Rat126223158309482983095072Ratregion
43400D15Got96132159717833997178470Ratregion
45595D18Got3281157881821178819827Ratregion
60117D15Got70156156246004362460198Ratregion
60118D15Got73139156180747461807612Ratregion
60119D15Got78207158518728085187486Ratregion
60120D15Got80140158487146984871608Ratregion
45273D15Got111135156404079664040930Ratregion
45274D15Got72205156701317167013378Ratregion
45276D15Got76216158189682981897044Ratregion
45277D15Got74167158203178882031954Ratregion
45278D15Got77288158332314883323435Ratregion
45281D15Got75171158248106582481235Ratregion
45283D15Got79171159153543091535600Ratregion
45284D15Got81277159224049892240780Ratregion
45285D15Got82165159161745491617618Ratregion
45286D15Got83247159416116094161406Ratregion
45287D15Got8679159784941997849497Ratregion
45288D15Got93144159645444196454586Ratregion
45289D15Got84148159679189796792044Ratregion
45290D15Got8527415100883950100884223Ratregion
45291D15Got9024415102452123102452366Ratregion
45292D15Got89160159656679796566956Ratregion
45294D15Got9120915104094198104094405Ratregion
45295D15Got9229515104867143104867434Ratregion
45296D15Got9516315104094248104094410Ratregion
45297D15Got9413715106303113106303249Ratregion
45298D15Got11315415106397205106397358Ratregion
625772D2Got189217158971163689711852Ratregion
60115D15Got68279156205067862050955Ratregion
60116D15Got69210156272761962727828Ratregion
62449D15Uia3168158794178687941952Ratregion
62451D15Uia4178156254978862549965Ratregion
66545D15Mco15168156357820463578369Ratregion
66633D15Mco3190158800940588009579Ratregion
1578852D10Chm2222115102595592102595812Ratregion
1631578D15Got231171157386127073861440Ratregion
1631763D15Got206123156183498261835099Ratregion
1631898D15Got228144157994862979948767Ratregion
1627753D15Got212172157539782075397991Ratregion
1628345D15Got233178157106162071061797Ratregion
1628726D15Got209163157412898474129146Ratregion
1629296D15Got210117157383735673837472Ratregion
1629313D15Wox13248158801200088012247Ratregion
1629889D15Got22296157144399971444089Ratregion
1640782D15Got243144156989563869895776Ratregion
1641365D15Got214112158573418185734292Ratregion
1641695D15Got247188156943951869439705Ratregion
1639818D15Got216165158800456388004725Ratregion
1639818D15Got216165158800433188004725Ratregion
1640262D15Got2419615105144515105144605Ratregion
1640394D15Ulb3284158801041788010700Ratregion
1635017D15Got225267156998058469980850Ratregion
1635632D15Got21177157699170376991779Ratregion
1637264D15Got208263157378333473783591Ratregion
1638133D15Got221176158600191486002084Ratregion
1633890D15Got204145156181029061810434Ratregion
1634050D15Got213116157952435979524474Ratregion
1634535D15Got226138158477311884773255Ratregion
7192222D15Mgh3149156259626062596410Ratregion
7192222D15Mgh3149156259528062596410Ratregion
7191260S100a1035015104191086104191434Ratregion
5035855PMC24270P1212158800731488007525Ratregion
5038704AU01771996158928433089284425Ratregion
5038840RH127363186156159821061598898Ratregion
5038878RH127385200157900139679001588Ratregion
5038950RH127426245158342954183429785Ratregion
7206534UniSTS:546922999157678724876788246Ratregion
7206748ha24360157275099572751679Ratregion
5039102RH127513215157506744375067657Ratregion
5036675AU048835247159308177993082025Ratregion
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5036967AU049781228159124373991243966Ratregion
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5035649RH45841138157678741176787548Ratregion
5033871RH140431144159681559696815739Ratregion
7206226Hs6st319015105253991105254180Ratregion
5031670AU047541219157360312473603337Ratregion
5026352RH131875203159364938293649584Ratregion
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5034357RH44769264159017739290177655Ratregion
5029169RH14377614915103863409103863557Ratregion
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5034750BI276836229159364347793643705Ratregion
5026766RH13344720715103369395103369601Ratregion
5035136BQ201059196159017378590173980Ratregion
5029729BE102165149157739761377397761Ratregion
5032417AI84918512915105795178105795306Ratregion
5032559SGC3838928915105797618105797906Ratregion
5032627RH134704217156146714461467415Ratregion
5034850AA850154143158613600986136151Ratregion
5035274AI102336158159382454793824704Ratregion
5035274AI102336158158745615387456310Ratregion
5033015RH137283212156992856069928771Ratregion
5024958S100a1051815104190990104191507Ratregion
5025476RH12846719315104191062104191254Ratregion
5033647RH139590209158493377684933984Ratregion
5028563AI182278290158209652782096816Ratregion
5031077BE109270150158861590088616049Ratregion
5056029RH14414211015103346554103346663Ratregion
5056421RH144368156156168957261689727Ratregion
5051549U1961767156186769461867760Ratregion
5056955RH14467717415102480606102480779Ratregion
5057866BF386288196158240804182408237Ratregion
5055049RH143576113156175912861759240Ratregion
5057962BE10175820315104761073104761275Ratregion
5055797RH144008217158238214182382357Ratregion
5056333RH144318134159364589593646028Ratregion
5058826BF38710717515106334047106334221Ratregion
5059682BE097625158158945820689458363Ratregion
5056563RH144451101159683108496831184Ratregion
505221542.MMHAP38FLF6.seq182156219700562197186Ratregion
5056757RH144562156157177365771773812Ratregion
5058976BE102662172157716499477165165Ratregion
5059046BE102739154158242553182425684Ratregion
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5059836BF38800118015101331881101332060Ratregion
5055613RH143902161159367875593678915Ratregion
5052995RH14239319615104115400104115595Ratregion
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5053111RH14246016215105775616105775777Ratregion
5050450RH13406320215105857766105857967Ratregion
5057804BI277150154158612309386123245Ratregion
5052733RH14224115015105797682105797831Ratregion
5051082RH134429217159364776393647979Ratregion
5051090RH134434208156174615461746361Ratregion
5050372RH134018181158855164788551827Ratregion
5052945RH142365180158945870889458887Ratregion
5054239RH143110115158861818488618298Ratregion
5053325RH142583272157570237875702649Ratregion
5054597RH143315121156156459661564716Ratregion
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5040944RH128573194159074667990746872Ratregion
5045686RH13132018715101776429101776615Ratregion
5046146RH131584219158645824886458466Ratregion
5045432RH131174184159017217990172362Ratregion
5045450RH131185190158926929489269483Ratregion
5046522RH13180221115103208081103208296Ratregion
5049016RH13323719615105854206105854401Ratregion
5048188RH132759180157083428770834466Ratregion
5042076RH129225212157506744775067658Ratregion
5049588RH133567200158911635789116555Ratregion
5039572RH127782200159636347996363677Ratregion
5040304RH12820620515103174259103174463Ratregion
5043022RH129784185156186647361866657Ratregion
5043036RH12979218015104115416104115595Ratregion
5043064RH129810203158799960887999810Ratregion
7192428Pou4f1835158862158688622420Ratregion
5073844RH137671145159330414593304289Ratregion
5076802RH139387153158955022889550380Ratregion
5075530RH138647216156186795761868172Ratregion
5077262RH139655220156169627561696494Ratregion
5076102RH138980120159315281693152935Ratregion
5076842RH139410247158926276889263014Ratregion
5077600RH139849215156159707761597291Ratregion
5078452RH140351157159366844993668605Ratregion
5080000RH14132518815103170948103171135Ratregion
5078212RH140209180158800482988005008Ratregion
5078932RH14063522015105795294105795513Ratregion
5078612RH14044498158493408984934186Ratregion
5079050RH140705181158800550988005690Ratregion
5079286RH14089320015106293029106293228Ratregion
5080358RH14153321015103696633103696842Ratregion
5071464RH13509721915103171192103171410Ratregion
5072094RH136647184156764526567645448Ratregion
5074298RH137936146157771385977714004Ratregion
5074568RH138092198157088501170885208Ratregion
5074844RH13825116415105872439105872602Ratregion
5064986BE10884415015103416903103417052Ratregion
5066656AU04822829415100840300100840588Ratregion
5066820AU048131228158877002088770248Ratregion
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5060918BE10474318115105878784105878964Ratregion
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5064352BI302068215156870177268701986Ratregion
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5060076BF388427151158475222184752371Ratregion
5065224BE121229179159356839493568572Ratregion
5065318BE121430158158363042183630578Ratregion
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5065514BE109190164159366811893668281Ratregion
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5062708BF403952151159672568096725830Ratregion
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5066078BF41331992158641655286416643Ratregion
5064548BF39935715315103257862103258014Ratregion
5064558BF39936212115105750558105750678Ratregion
5066242PMC125354P1274158862049488620767Ratregion
5061192BI293372220158355551283555731Ratregion
5064768BF4116039615105785014105785109Ratregion
5061354BF396296180158861666288616841Ratregion
5064816BE108573153158232361082323762Ratregion
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5064868BE108656150157177276271772911Ratregion
5066560AU048285121158790327687903396Ratregion
5061566BF4020499815101020468101020564Ratregion
5084088AI408351167158738470487384870Ratregion
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5087452PMC18246P2242156550771665507957Ratregion
5089143AU048980150158096012980960278Ratregion
5088054Pou4f178158862002788620104Ratregion
5088223AU048440267158368223983682505Ratregion
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5089437AU049155295156457572364576017Ratregion
5089715AU049320261156181029661810556Ratregion
5090001AU049491154158368579183685944Ratregion
5084390AI101498196159657078996570984Ratregion
5081885BF415208181158945870989458889Ratregion
5081887BE11864716715102482910102483076Ratregion
5081935BE118787173158213956382139735Ratregion
5082039BF41574311515100285207100285321Ratregion
5082093BF40944410315103932164103932266Ratregion
5084890AI009239220159365023393650452Ratregion
5082373BE11929115315105254318105254470Ratregion
5088393AU048543289158464684084647128Ratregion
5088447AU048574199157621101576211213Ratregion
5088543AU048632239156699836566998587Ratregion
5085137BQ200206214157095225670952469Ratregion
5085276BM390056201158616328486163484Ratregion
5090511AU049794215158018494780185161Ratregion
5088813AU048787288156900217369002441Ratregion
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5089027AU048911125157994866679948790Ratregion
5084660AI178492187159364719693647382Ratregion
5083019BF390670197157741107877411274Ratregion
5086345BM386386216159367978093679995Ratregion
5081038RH141929180158738793587388114Ratregion
5086455BE10632018915105694884105695072Ratregion
5085609BQ201795220156169627561696494Ratregion
5086711BM386690213156257732262577534Ratregion
5086727AI008211192158642446586424656Ratregion
5086766BE107302180158234623582346414Ratregion
5086823BE10738316915100182622100182790Ratregion
5503218UniSTS:237232198156992859069928787Ratregion
5503222UniSTS:237237170158371091483711083Ratregion
5503566D6S2838535158895948688960020Ratregion
5503770UniSTS:470675153158862046688620618Ratregion
5503873EDNRB-21429158801239688013824Ratregion
5503658UniSTS:465489164158862045588620618Ratregion
5504036px-39f10692157462800574628696Ratregion
5504066px-59g3108157165054371650650Ratregion
5504352D13S1087E120158209811482098233Ratregion
5504316D13S865E207159330396793304173Ratregion
5506171AFM350VD143815100586361100586798Ratregion
5506755G4516116815105064210105064377Ratregion
5506755G4516116815104548511104548678Ratregion
5506511UniSTS:276144998158862147288622469Ratregion
5506785G45372202156961265269612853Ratregion
5502780DCT51515103232680103233194Ratregion
5502782GPC611515102165079102165193Ratregion
5502784TBC1D4137158593624485936380Ratregion
5500521RH13585213215105795607105795738Ratregion
5500561RH136003215158432117284321386Ratregion
5500873D8S18071641158081098280812622Ratregion
5501476D5S680015101746716101747700Ratregion
5501476D5S680015101746315101747700Ratregion
5501872MARC_16477-16478:1019839220:10158930675189307434Ratregion
5501872MARC_16477-16478:1019839220:10158930675189306835Ratregion
5502263C7694120515106289890106291520Ratregion
5502525RH1251918515105795728105795812Ratregion
5502639RH12606624315106291461106292161Ratregion
5502774LOC144997109156764581667645924Ratregion
5502778DACH1219158209654182096759Ratregion
5502459RH12490815615104191106104191261Ratregion
5502607RH12551015415104191108104191261Ratregion
5502527RH125194171159372343893723608Ratregion
Position Markers

Peak: (D15Mgh4)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01583,947,714 - 83,947,819NCBI
Rnor_5.01587,456,591 - 87,456,696UniSTS
RGSC_v3.41583,349,372 - 83,349,477UniSTS
RGSC_v3.41583,349,371 - 83,349,477RGD
RGSC_v3.11583,365,152 - 83,365,257RGD
Celera1575,545,830 - 75,545,935UniSTS
Cytogenetic Map4q34UniSTS
RH 3.4 Map15528.0UniSTS
RH 3.4 Map15528.0RGD
RH 2.0 Map15405.8RGD
SHRSP x BN Map1548.3298RGD


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15162301382Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151549236072568189Rat
9590272Scort14Serum corticosterone level QTL 142.780.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)151698090761980907Rat
8694427Bw163Body weight QTL 1634.820.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)151698090761980907Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151724964162249641Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151724964162249641Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151724964162249641Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151809320881255430Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151851391388036354Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1526381041106550657Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1526381041106550657Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1526381041106550657Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152870974173709741Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)153321910189640841Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)153321910189640841Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)153321910189640841Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)153321910189640841Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)153321910189640841Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)153948079762596410Rat
2293686Bmd36Bone mineral density QTL 367.40.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)153974955779033707Rat
2293691Bmd37Bone mineral density QTL 376.60.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)153974955779033707Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)154106809486068094Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1543097470106550657Rat
724545Niddm54Non-insulin dependent diabetes mellitus QTL 540.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)155752897081263988Rat
2317050Aia24Adjuvant induced arthritis QTL 242.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)155965115181255430Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)1561447766106447766Rat
61477Aia4Adjuvant induced arthritis QTL 43joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)156259641099372139Rat
631516Gluco31Glucose level QTL 317blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1562596410103164962Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1565520564110520564Rat
2313080Bss65Bone structure and strength QTL 653.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)156836650881255430Rat
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1575527634111246239Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1575761024109400896Rat
724548Niddm55Non-insulin dependent diabetes mellitus QTL 550.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)157576121681263843Rat
1331724Bp223Blood pressure QTL 2233.53715arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1581255292103165069Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)1581255292109133904Rat
70182BpQTLcluster12Blood pressure QTL cluster 123.53arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)1581255430103164962Rat
1581555Eae19Experimental allergic encephalomyelitis QTL 194.7nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)158394771498027710Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1583947714111246239Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1584050550111246239Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1584050550111246239Rat
1300118Bp190Blood pressure QTL 1902.94arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)1589640684106550657Rat
1300120Kidm7Kidney mass QTL 73.55kidney mass (VT:0002707)left kidney wet weight to body weight ratio (CMO:0001954)1589640684106550657Rat
1581519Cm59Cardiac mass QTL 592.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)1596777066104003672Rat
1358354Srcrt5Stress Responsive Cort QTL 53.38blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)15105348517108369033Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_statistics_details logistic regression model for analysis of schwannoma incidence (dichotomous), Cox regression model for analysis of survival times (quantitative); significant p-value for males only, survival time length 1559300