D15Rat26 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

Marker: D15Rat26

Symbol: D15Rat26
Previously known as: oxsts6263; R031-B08; R0031-B08; 
RGD ID: 36149
Expected Size: 147 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81598,754,134 - 98,754,281 (+)Marker Load Pipeline
mRatBN7.21592,346,926 - 92,347,073 (+)MAPPERmRatBN7.2
Rnor_6.015100,390,296 - 100,390,442NCBIRnor6.0
Rnor_5.015103,847,523 - 103,847,669UniSTSRnor5.0
RGSC_v3.415100,026,552 - 100,026,699RGDRGSC3.4
RGSC_v3.415100,026,553 - 100,026,699UniSTSRGSC3.4
RGSC_v3.115100,042,332 - 100,042,479RGD
Celera1591,210,749 - 91,210,895UniSTS
RH 3.4 Map15610.4UniSTS
RH 3.4 Map15610.4RGD
RH 2.0 Map15495.0RGD
SHRSP x BN Map1558.4498RGD
Cytogenetic Map15q24UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
QTLs:   Cm59  
Genes:   Gpc5  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8


 
Forward Primer CCAAATGATTAGATATTGATCATGA
Reverse Primer CCTCATTTTCTTCCTGCCAA
 
Template 
TCGACTCTAGAGGATCCCCCTTAACAAACACATGCCATAAAATTCACCAGGTATTGCACACTAC
AATGGTTTTAGTGTATCCCTGGAGAAGGTAATCACAATTACCTTCAGGTCACTTTCACCGCCAC
CTCAATACACCCACATCCTCATTTTCTTCCTGCCAAATAACTAAACTAGACCTCAATCAACGAT
AAAGGTATTTTCTATCACTAGAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAAAG
TCATAGGAGTAGACTCATGATCAATATCTAATCATTTGGAAAGGGGTACCGAGCTCGAATTCGT
AATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACG
AGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCG
TTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCC
AACGCGCGGGGAGAGGCGGTTTGCGTATTGGGCGCCAGGGTGGTTTTTCTTTTCACAGTGAGAC
GGGCAACAGCTGATTGCCCTTCACGCCTGGCCCTGAGAGAGTTGCAGCAGCGGTCCANNGGTTT
GCCCACAGGCGAAAATCTGTTGATGTGGTCGAATNNAAATCCTTATAATCAAAGAAT
Strain, Expected Size(s)

AVN/Orl 153 BBDP/Rhw 169 BBDR/Rhw 169
BC/CpbU 167 BDIX/Han 167 BDVII/Cub 167
BN-Lx/Cub 149 BN/SsNHsd 149 BP/Cub 167
BUF/Pit 166 COP/OlaHsd 153 DA/PitN 167
DON/Melb 167 F344/Pit 167 FHH/Eur 167
GH/Omr 167 GK/KyoSwe 169 IS/Kyo 161
LE/Mol 167 LEW/Pit 153 LH/Mav 167
LN/Mav 167 LOU/CHan 167 M520/N 167
MHS/Gib 153 MNR/N 165 MNRA/N 165
MNS/Gib 153 MR/Pit 165 NEDH/K 167
NP9 151 ODU/N 167 OKA/Wsl 169
OM/Ztm 167 P5C 169 PVG/Pit 165
SD/Rij 167 SHR/OlaHsd 167 SHRSP/Riv 167
SR/Jr 165 SS/Jr 167 WAG/RijKyo 167
WF/Pit 169 WIST/Nhg 169 WKY/OlaHsd 153
WN/N 165 WTC/Kyo 169


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1308835Gpc5glypican 5159220727593644054Rat
GenBank Nucleotide JH618555.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 18 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1567588667101769107Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1575788062101769107Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1568327165100062518Rat
1300118Bp190Blood pressure QTL 1902.94arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)158226252098288169Rat
70182BpQTLcluster12Blood pressure QTL cluster 123.53arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)157369065795018120Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1576306099101769107Rat
1300120Kidm7Kidney mass QTL 73.55kidney mass (VT:0002707)left kidney wet weight to body weight ratio (CMO:0001954)158226252098288169Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat

1 to 10 of 18 rows


Database
Acc Id
Source(s)
NCBI Gene 100302838 UniSTS
  306157 UniSTS