Cm59 QTL Report (Rattus norvegicus) - Rat Genome Database
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QTL Registration

QTL: Cm59 (Cardiac mass QTL 59) Rattus norvegicus

Symbol: Cm59
Name: Cardiac mass QTL 59
RGD ID: 1581519
Also known as: Lvm11
Trait: heart left ventricle mass   (VT:0007031)    
Measurement Type: heart left ventricle weight to body weight ratio   (CMO:0000530)    
LOD Score: 2.8
P Value: 0.05
Variance: 3.0
Inheritance Type: additive
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01596,777,066 - 104,003,672RGD_MAPPER_PIPELINERnor6.0
Rnor_5.015100,267,081 - 107,428,111RGDRnor5.0
RGSC_v3.41596,375,862 - 103,677,388RGDRGSC3.4
RGSC_v3.11596,391,642 - 103,693,168RGD
Cross Type: Not Available
Strains Crossed: WKY/Cfd WKHA/Cfd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
WKHA/Cfd  (IEA)
WKY/Cfd  (IEA)

References

References - curated
1. Llamas B, etal., Mamm Genome. 2005 Sep;16(9):700-11. Epub 2005 Oct 20.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1310957Slitrk5SLIT and NTRK-like family, member 5159681790796826760Rat
11513546LOC108352971uncharacterized LOC108352971159723647097420593Rat
7560548LOC102546988uncharacterized LOC102546988159736878697377559Rat
1592125LOC692047hypothetical protein LOC692047159768740197688523Rat
11467873LOC108353050protein transport protein Sec61 subunit gamma pseudogene159810759498107821Rat
7639286LOC102549993uncharacterized LOC102549993159861924798620916Rat
2316379Vom1r-ps104vomeronasal 1 receptor pseudogene 104159864381698644697Rat
7684851LOC102550064uncharacterized LOC102550064159866071098669054Rat
7717526LOC102550250uncharacterized LOC102550250159871973298761167Rat
7716610LOC102550532uncharacterized LOC102550532159878485698833099Rat
9282704LOC103693775uncharacterized LOC103693775159886139398875741Rat
1592124LOC692048similar to CDK105 protein159892682198928256Rat
7613297LOC102547440uncharacterized LOC102547440159897197199072728Rat
9362338LOC103690225uncharacterized LOC103690225159900967999073223Rat
11501014LOC108352972uncharacterized LOC108352972159918182999222787Rat
2323075LOC100359970poly(rC) binding protein 1-like159919203299193050Rat
9439287LOC103693885uncharacterized LOC103693885159922616599233217Rat
7551051LOC102547827uncharacterized LOC102547827159925615799257803Rat
7513817LOC102547891uncharacterized LOC102547891159932971199346059Rat
1592123LOC692049similar to ribosomal protein S11159946521899465776Rat
11510082LOC10835301240S ribosomal protein S17 pseudogene159976203299771423Rat
11398925LOC108352973uncharacterized LOC108352973159993755799968945Rat
2325600Mir17microRNA 1715100179879100179962Rat
2325396Mir18amicroRNA 18a15100180015100180110Rat
2325462Mir19amicroRNA 19a15100180162100180243Rat
2325401Mir20amicroRNA 20a15100180334100180418Rat
2325433Mir19b1microRNA 19b-115100180464100180550Rat
2325390Mir92a1microRNA 92a-115100180586100180663Rat
7644006LOC102548462uncharacterized LOC10254846215100208893100285666Rat
11483312LOC108353028uncharacterized LOC10835302815100237709100268750Rat
1308835Gpc5glypican 515100283131101776838Rat
7517571LOC10254836940S ribosomal protein S16-like15100303331100303838Rat
6488688LOC10091213260S ribosomal protein L10-like15101505377101505823Rat
1593308Gpc6glypican 615102164091103174721Rat
9272793LOC103693784uncharacterized LOC10369378415102492880102497195Rat
9231101LOC103693783transmembrane protein 11, mitochondrial-like15102578969102587583Rat
11394812LOC10835302940S ribosomal protein S6 pseudogene15102619263102623236Rat
9449268LOC103693782uncharacterized LOC10369378215102663539102673907Rat
7705185LOC102548523importin-5-like15102828744102831986Rat
9394505LOC103693781uncharacterized LOC10369378115102987520102991094Rat
1564975Dctdopachrome tautomerase15103208174103245033Rat
7620398LOC102548872uncharacterized LOC10254887215103258798103266844Rat
7735776LOC102548945uncharacterized LOC10254894515103295296103306960Rat
11492158Trnaf-gaa5transfer RNA phenylalanine (anticodon GAA) 515103297323103297395Rat
1306544TgdsTDP-glucose 4,6-dehydratase15103319268103340239Rat
1359193Gpr180G protein-coupled receptor 18015103340387103369633Rat
9251708LOC103693886uncharacterized LOC10369388615103392754103397446Rat
1304724Sox21SRY-box transcription factor 2115103438674103441405Rat
7654866LOC102549101uncharacterized LOC10254910115103504870103507313Rat
9095740LOC103693790uncharacterized LOC10369379015103563031103566680Rat
11519747LOC108352974uncharacterized LOC10835297415103578180103588467Rat
620266Abcc4ATP binding cassette subfamily C member 415103695415103927980Rat
11413332LOC108352975uncharacterized LOC10835297515103928043103932459Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
33820D15Mit6194159937213999372348Ratregion
34160D15Mgh510015103164962103165069Ratregion
34162D15Mgh621115104003455104003672Ratregion
36149D15Rat2616515100390296100390442Ratregion
35497D15Rat2515415101059401101059554Ratregion
37014D15Rat2413715102573998102574127Ratregion
40490D15Rat12725915103281673103281920Ratregion
40106D15Rat102153159802755898027710Ratregion
39324D15Rat5124515102522908102523143Ratregion
39570D15Rat10424115102298523102298759Ratregion
43059D15Rat15523815101088037101088275Ratregion
43060D15Rat15622915101088037101088264Ratregion
43400D15Got96132159717833997178470Ratregion
45287D15Got8679159784941997849497Ratregion
45289D15Got84148159679189796792044Ratregion
45290D15Got8527415100883950100884223Ratregion
45291D15Got9024415102452123102452366Ratregion
1578852D10Chm2222115102595592102595812Ratregion
5033871RH140431144159681559696815739Ratregion
5029169RH14377614915103863409103863557Ratregion
5026766RH13344720715103369395103369601Ratregion
5056029RH14414211015103346554103346663Ratregion
5056955RH14467717415102480606102480779Ratregion
5056563RH144451101159683108496831184Ratregion
5059836BF38800118015101331881101332060Ratregion
5045686RH13132018715101776429101776615Ratregion
5046522RH13180221115103208081103208296Ratregion
5040304RH12820620515103174259103174463Ratregion
5080000RH14132518815103170948103171135Ratregion
5080358RH14153321015103696633103696842Ratregion
5071464RH13509721915103171192103171410Ratregion
5064986BE10884415015103416903103417052Ratregion
5066656AU04822829415100840300100840588Ratregion
5067264AU04786129215103893726103894017Ratregion
5062186BF39752922915103367891103368119Ratregion
5064392BF39919518215102971315102971496Ratregion
5060616BI28623520515103928620103928824Ratregion
5064548BF39935715315103257862103258014Ratregion
5064824BF405158124159682636496826487Ratregion
5061566BF4020499815101020468101020564Ratregion
5081887BE11864716715102482910102483076Ratregion
5082039BF41574311515100285207100285321Ratregion
5082093BF40944410315103932164103932266Ratregion
5086823BE10738316915100182622100182790Ratregion
5506171AFM350VD143815100586361100586798Ratregion
5502780DCT51515103232680103233194Ratregion
5502782GPC611515102165079102165193Ratregion
5501476D5S680015101746716101747700Ratregion
5501476D5S680015101746315101747700Ratregion
Position Markers

Flank 1: (D15Mgh6)
Rat AssemblyChrPosition (strand)Source
Rnor_6.015104,003,455 - 104,003,672NCBI
Rnor_5.015107,427,894 - 107,428,111UniSTS
RGSC_v3.415103,677,170 - 103,677,388RGD
RGSC_v3.415103,677,171 - 103,677,388UniSTS
RGSC_v3.115103,692,950 - 103,693,168RGD
Celera1594,690,276 - 94,690,493UniSTS
RH 3.4 Map15657.0UniSTS
RH 3.4 Map15657.0RGD
RH 2.0 Map15569.0RGD
Cytogenetic Map15 RGD
Peak: (D15Rat26)
Rat AssemblyChrPosition (strand)Source
Rnor_6.015100,390,296 - 100,390,442NCBI
Rnor_5.015103,847,523 - 103,847,669UniSTS
RGSC_v3.415100,026,553 - 100,026,699UniSTS
RGSC_v3.415100,026,552 - 100,026,699RGD
RGSC_v3.115100,042,332 - 100,042,479RGD
Celera1591,210,749 - 91,210,895UniSTS
RH 3.4 Map15610.4RGD
RH 3.4 Map15610.4UniSTS
RH 2.0 Map15495.0RGD
SHRSP x BN Map1558.4498RGD
Cytogenetic Map15q24UniSTS
Flank 2: (D15Rat41)
Rat AssemblyChrPosition (strand)Source
SHRSP x BN Map1534.6299RGD
SHRSP x BN Map1534.6299UniSTS
FHH x ACI Map1547.47RGD


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1526381041106550657Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1526381041106550657Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1526381041106550657Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1543097470106550657Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)1561447766106447766Rat
61477Aia4Adjuvant induced arthritis QTL 43joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)156259641099372139Rat
631516Gluco31Glucose level QTL 317blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1562596410103164962Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1565520564110520564Rat
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1575527634111246239Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1575761024109400896Rat
1331724Bp223Blood pressure QTL 2233.53715arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1581255292103165069Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)1581255292109133904Rat
70182BpQTLcluster12Blood pressure QTL cluster 123.53arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)1581255430103164962Rat
1581555Eae19Experimental allergic encephalomyelitis QTL 194.7nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)158394771498027710Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1583947714111246239Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1584050550111246239Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1584050550111246239Rat
1300118Bp190Blood pressure QTL 1902.94arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)1589640684106550657Rat
1300120Kidm7Kidney mass QTL 73.55kidney mass (VT:0002707)left kidney wet weight to body weight ratio (CMO:0001954)1589640684106550657Rat
1581519Cm59Cardiac mass QTL 592.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)1596777066104003672Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_statistics_details MapManager QTX used for linkage analysis; analysis was for female rats only 1578726