Marker: D15Rat157 |
| Symbol: |
D15Rat157 |
| Previously known as: |
R0336-B02; oxsts9663;
|
| RGD ID: |
43063 |
| Expected Size: |
228 (bp) |
| Position |
| Rat Assembly | Chr | Position (strand) | Source | JBrowse |
|---|
mRatBN7.2 | 15 | 99,484,233 - 99,484,450 (+) | MAPPER | mRatBN7.2 | Rnor_6.0 | 15 | 108,816,785 - 108,817,001 | NCBI | Rnor6.0 | Rnor_5.0 | 15 | 112,202,616 - 112,202,832 | UniSTS | Rnor5.0 | RGSC_v3.4 | 15 | 107,516,238 - 107,516,454 | UniSTS | RGSC3.4 | RGSC_v3.4 | 15 | 107,516,237 - 107,516,454 | RGD | RGSC3.4 | RGSC_v3.1 | 15 | 107,532,018 - 107,532,234 | RGD | | Celera | 15 | 98,254,359 - 98,254,575 | UniSTS | | RH 3.4 Map | 15 | 713.4 | RGD | | RH 3.4 Map | 15 | 713.4 | UniSTS | | RH 2.0 Map | 15 | 616.3 | RGD | | SHRSP x BN Map | 15 | 65.4398 | RGD | | Cytogenetic Map | 15 | q25 | UniSTS | |
|
| Is Marker For: |
Genes:
Clybl
|
Annotation
References - curated
| # |
Reference Title |
Reference Citation |
| 1. |
Data downloaded from Wellcome Trust, University of Oxford |
Data downloaded from Wellcome Trust, University of Oxford
|
| 2. |
High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. |
Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
|
| 3. |
Rat Genetic Map Data |
Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
|
| 4. |
Electronic Transfer of SSLP Data |
Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
|
| 5. |
UniSTS Pipeline |
RGD automated pipelines
|
| 6. |
RH Map Project |
RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
|
| 7. |
A high density integrated genetic linkage and radiation hybrid map of the laboratory rat |
Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8
|
Strains and Sequence
Sequence
| |
| Forward Primer |
GAGAGGTCTTTGTTTCCCCA |
| Reverse Primer |
TCTCGTGCAAGGCTTAAGGT |
| |
| Template |
CGGTCAGANTCTAGAGGATCCCCACTGATTTTGAGAGGTCTTTGTTTCCCCAACTATATTTCTA
CACACACACACACACACACACACACACACACACACACACACACACACACACACATACACATACA
AGTGATCAAAAGATGTGAGACTTTGTATCCTGTGTTTTAACGCCTGCTCTCACTGAGTATTTTA
TGTCCTCTCATGATCCTACGGTACTAACGTTTGGAACTTAATTGTGACACCTTAAGCCTTGCAC
GAGAGAGGGCAAGAAGCAGTAGAACATGGTGGGGGCTGGGGCGGGGTTGCTAGGGGAGAAGGCA
GAATATCATCACCAACTGTATGATACCTGCCTGGAGCAGGTGGTCGGAGGGCTTAAAATCAGCA
AAAGTGTCCCGTTATTCATAGCTAAAGACTGGATCAGGGCAAGGGCTGTCAGTGGTACCGAGCT
CGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACA
CAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACA
TTAATTGCGTTGGCTCATGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGA
ATCGGCCAACGCGCGGGGAGAGGGGTTTGGTATTGGGCGCCGGGTGGTTTTTCTTTTCACAGTG
AGAGGGCACAGTGATTGCCTCACGCTGGCCTGGAGATTGCGCAGGGTCNGTGGTTGNCAGCGGG
AAATNTGTTGTGTGTCNANNA
|
Region
Genes in Region
| 1304615 | Clybl | citramalyl-CoA lyase | 15 | 99283644 | 99505697 | Rat | | 41169861 | LOC120097095 | uncharacterized LOC120097095 | 15 | 99469982 | 99552531 | Rat | |
QTLs in Region (mRatBN7.2)
| 631655 | Bp126 | Blood pressure QTL 126 | 4 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 15 | 58156477 | 101769107 | Rat | | 731177 | Uae26 | Urinary albumin excretion QTL 26 | 2.4 | 0.025 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 15 | 67588667 | 101769107 | Rat | | 2300326 | Plaw1 | Placental weight QTL 1 | 15 | 0.005 | placenta mass (VT:0004257) | placenta wet weight (CMO:0002088) | 15 | 68327165 | 100062518 | Rat | | 1641889 | Colcr6 | Colorectal carcinoma resistance QTL 6 | 2.9 | 0.0126 | intestine integrity trait (VT:0010554) | benign colorectal tumor surface area measurement (CMO:0001799) | 15 | 73690518 | 99794247 | Rat | | 2317055 | Aia10 | Adjuvant induced arthritis QTL 10 | 3.41 | | joint integrity trait (VT:0010548) | left rear ankle joint diameter (CMO:0002149) | 15 | 75788062 | 101769107 | Rat | | 1549844 | Bss7 | Bone structure and strength QTL 7 | 6.4 | | femur strength trait (VT:0010010) | femur midshaft polar moment of inertia (CMO:0001669) | 15 | 75788062 | 101769107 | Rat | | 70155 | Gcs1 | Gastric cancer susceptibility QTL1 | 3.8 | | stomach morphology trait (VT:0000470) | stomach tumor susceptibility score (CMO:0002043) | 15 | 76306099 | 101769107 | Rat | |
