D15Rat22 Marker Search Result - Rat Genome Database

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Marker: D15Rat22

Symbol: D15Rat22
Previously known as: oxsts6259; R007-D08; R0007-D08; 
RGD ID: 35230
Expected Size: 146 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81580,107,015 - 80,107,161 (+)Marker Load Pipeline
mRatBN7.21573,699,069 - 73,699,215 (+)MAPPERmRatBN7.2
Rnor_6.01581,263,843 - 81,263,988NCBIRnor6.0
Rnor_5.01584,802,815 - 84,802,960UniSTSRnor5.0
RGSC_v3.41580,370,512 - 80,370,658RGDRGSC3.4
RGSC_v3.41580,370,513 - 80,370,658UniSTSRGSC3.4
RGSC_v3.11580,386,293 - 80,386,438RGD
Celera1572,968,417 - 72,968,562UniSTS
RH 3.4 Map15521.0UniSTS
RH 3.4 Map15521.0RGD
RH 2.0 Map15385.2RGD
SHRSP x BN Map1543.6598RGD
Cytogenetic Map15 RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
QTLs:   Aia4   Niddm54   Niddm55  


Annotation


1 to 9 of 9 rows
#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Localization of quantitative trait loci regulating adjuvant-induced arthritis in rats: evidence for genetic factors common to multiple autoimmune diseases. Kawahito Y, etal., J Immunol 1998 Oct 15;161(8):4411-9
3. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
4. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
5. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
6. UniSTS Pipeline RGD automated pipelines
7. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
8. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8
9. Electronic Submission of SSLP Data Sets Wilder R. Oct.2000. National Institute of Arthritis and Musculoskeletal and Skin Diseases, ARB Rat Genetic Database
1 to 9 of 9 rows


 
Forward Primer TCACAGGTCTGCATCAGGTC
Reverse Primer ATACACATGGCCCCCTGTTA
 
Template 
GATGCTGCAGGTCGATCAGAGGATCCCCACAGGCATTCACAGGTCTGCATCAGGTCCTTTCTGC
ATGTATTATGGTAGGTTTATTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCCTAACAGGGGGCCATGTGTAT
CTCTGAATTTTTTTGACAGATCTTGGGACTTTTTGTCCTATTTGGTTGTCCTGTCCAGCTTCCA
TATGAGGACTTTAACTCGTCTTATTGTGTCTTGTTTGGTCTTGTTGGGATGTCGTCTCTTATTG
GCTTGCTCTTCTGAACAGGGAAGCAGAGAGGGGATGTATCTGGGGTACTAATTCATTTTCCATT
ATGACACTTGTCACCTTAGCATAGAAACACGTCACTTTAAAGCTATAACCTTCTACCCCTTTTA
CCAACAAAGCCTCTTTTTTATCTCATAAAAATACAGTCCAGGTTTAAAAGTCACCAATGTTCGT
TAAATTCCAATGCTTNAAAAAAAAACAGATTTTCAGCTGTGAGCTCCTTATAAAATGAGAAACA
AGTCATCAGCTCCCTCTCATATNATGACAGAGTAAACATTCTTATTCCAAAAGGGTTTATTNAG
GCCTANANATGTTTAATCAACCCNNAGCAAACCCCCCCCATCCAGTGGGGTACGAGCTCGAATT
CGNNATTCATGGNCATANNTGTNNCCTGTGTGANATNGNNATGCGCTCACAATTTCNCACAANA
NNCGAGCCGGGNAGNATANAGTGTAAANCCNNGNGTGCCTAATGAGTGGNGCTNNNCACNT
Strain, Expected Size(s)

ACI/N 160 AVN/Orl 152 BBDP/Rhw 156
BBDR/Rhw 156 BC/CpbU 160 BDIX/Han 160
BDVII/Cub 160 BN-Lx/Cub 152 BN/SsNHsd 150
BP/Cub 160 BUF/Pit 160 COP/OlaHsd 156
DA/PitN 160 DON/Melb 145 F344/Pit 145
FHH/Eur 160 GH/Omr 160 GK/KyoSwe 160
IS/Kyo 128 LE/Mol 145 LEW/Pit 145
LH/Mav 156 LN/Mav 156 LOU/CHan 145
M520/N 145 MHS/Gib 145 MNR/N 152
MNRA/N 152 MNS/Gib 145 MR/Pit 154
NEDH/K 145 NP9 156 ODU/N 160
OKA/Wsl 160 OM/Ztm 152 P5C 156
PVG/Pit 145 SD/Rij 160 SHR/OlaHsd 160
SHRSP/Riv 160 SR/Jr 156 SS/Jr 156
WAG/RijKyo 145 WF/Pit 156 WIST/Nhg 160
WKY/OlaHsd 152 WN/N 160 WTC/Kyo 160


GenBank Nucleotide CH473951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 23 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1567588667101769107Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
61477Aia4Adjuvant induced arthritis QTL 43joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)155559608991365858Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1568327165100062518Rat
70182BpQTLcluster12Blood pressure QTL cluster 123.53arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)157369065795018120Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)152788577486257085Rat
724545Niddm54Non-insulin dependent diabetes mellitus QTL 540.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)155079449473699215Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat

1 to 10 of 23 rows


Note Type Note Reference
Database
Acc Id
Source(s)
NCBI Gene 326479 UniSTS
  387460 UniSTS
  387463 UniSTS