Srcrt5 QTL Report (Rattus norvegicus) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

QTL: Srcrt5 (Stress Responsive Cort QTL 5) Rattus norvegicus

Symbol: Srcrt5
Name: Stress Responsive Cort QTL 5
RGD ID: 1358354
Trait: blood corticosterone amount   (VT:0005345)    
Measurement Type: plasma corticosterone level   (CMO:0001173)    
LOD Score: 3.38
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.015105,348,517 - 108,369,033RGD_MAPPER_PIPELINERnor6.0
Rnor_5.015108,749,721 - 111,756,589RGDRnor5.0
RGSC_v3.415106,152,589 - 107,060,711RGDRGSC3.4
RGSC_v3.115106,168,381 - 107,076,479RGD
Cross Type: Not Available
Strains Crossed: WKY/NHsd F344/NHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
F344/NHsd  (IEA)
WKY/NHsd  (IEA)

References

References - curated
1. Solberg LC, etal., Physiol Genomics. 2006 Nov 27;27(3):362-9. Epub 2006 Aug 8.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
621736Slc15a1solute carrier family 15 member 115106800081106844668Rat
620590Rap2aRAP2A, member of RAS oncogene family15105851543105852033Rat
629617Dock9dedicator of cytokinesis 915107945664108210967Rat
1304889Gpr18G protein-coupled receptor 1815108323157108326907Rat
1305346Farp1FERM, ARH/RhoGEF and pleckstrin domain protein 115106375298106625837Rat
1333939Olr1865-psolfactory receptor pseudogene 186515107179210107179828Rat
1333979Olr1775-psolfactory receptor pseudogene 177515107394668107395306Rat
1308715Ipo5importin 515106243110106293326Rat
1561742Stk24serine/threonine kinase 2415106629258106678917Rat
1311689Ubac2UBA domain containing 215108286407108433531Rat
1303155Oxgr1oxoglutarate receptor 115105399596105422559Rat
1591755Mbnl2muscleblind-like splicing regulator 215105640097105797933Rat
1592106LOC290492similar to glyceraldehyde-3-phosphate dehydrogenase15105384418105385451Rat
1594175LOC680256similar to zinc finger, CCHC domain containing 915105395957105397046Rat
1598095Gpr183G protein-coupled receptor 18315108364701108376221Rat
2323549LOC100363190ribosomal protein S7-like15106314135106314787Rat
6498897LOC100910364eukaryotic translation initiation factor 3 subunit E-like15107874810107876121Rat
6501347LOC100909886uncharacterized LOC10090988615106342919106346380Rat
6498529LOC10091040360S acidic ribosomal protein P0-like15107906538107907510Rat
7595019LOC102554679uncharacterized LOC10255467915108324656108331550Rat
7609495LOC102551086uncharacterized LOC10255108615105549560105564839Rat
7563047LOC102547244uncharacterized LOC10254724415105467932105530053Rat
7564454LOC102551568uncharacterized LOC10255156815107921527107925394Rat
7673172LOC102549566uncharacterized LOC10254956615105764295105769872Rat
7737711LOC102547176uncharacterized LOC10254717615105513127105520957Rat
9107661Lnc004long non-coding RNA 00415106806818106817662Rat
9346826LOC103693802uncharacterized LOC10369380215105963294105984574Rat
9460260LOC103693801uncharacterized LOC10369380115105798449105803736Rat
9437177LOC103693804uncharacterized LOC10369380415108284582108286380Rat
11433702LOC108352979uncharacterized LOC10835297915105406882105412187Rat
11435685LOC108353051uncharacterized LOC10835305115105440216105444375Rat
11451904LOC108352980uncharacterized LOC10835298015105500949105511778Rat
11423500LOC108352981uncharacterized LOC10835298115106064405106082875Rat
11478155LOC108352978uncharacterized LOC10835297815105376613105377850Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
37534D15Rat4911215105575422105575535Ratregion
35321D15Rat2713815108368891108369033Ratregion
38106D15Rat5021115106858673106858877Ratregion
40516D15Rat10617315106550444106550657Ratregion
43061D15Rat15812415105596549105596676Ratregion
43062D15Rat12824515105746756105747001Ratregion
60088D15Got11415515108142062108142212Ratregion
45297D15Got9413715106303113106303249Ratregion
45298D15Got11315415106397205106397358Ratregion
5036977AU04980620815107181581107181754Ratregion
5037107RH4848812915106635012106635509Ratregion
5028817RH14244315115107951817107952371Ratregion
5034828AI40854017115108323200108323370Ratregion
5032417AI84918512915105795178105795306Ratregion
5032559SGC3838928915105797618105797906Ratregion
5027481AW2288449815106625437106625534Ratregion
5058826BF38710717515106334047106334221Ratregion
5049938RH13376818615106292526106292711Ratregion
5053111RH14246016215105775616105775777Ratregion
5050450RH13406320215105857766105857967Ratregion
5052733RH14224115015105797682105797831Ratregion
5044056RH13038418115106291486106292124Ratregion
5049016RH13323719615105854206105854401Ratregion
5042242RH12932220415106626296106626499Ratregion
5043816RH13024420815106628376106628584Ratregion
5072508RH13689021615106626286106626501Ratregion
5074910RH13828917615106592079106592254Ratregion
5080642RH14169821515107973411107973625Ratregion
5080710RH14173718215106624579106624760Ratregion
5076344RH13912115615106589670106589825Ratregion
5076374RH13913824915106592691106592939Ratregion
5078932RH14063522015105795294105795513Ratregion
5079286RH14089320015106293029106293228Ratregion
5074844RH13825116415105872439105872602Ratregion
5060918BE10474318115105878784105878964Ratregion
5066080BE11675517715106570339106570515Ratregion
5064558BF39936212115105750558105750678Ratregion
5064768BF4116039615105785014105785109Ratregion
5084308AA84895121415107945966107946179Ratregion
5086987BE10753115015106493387106493536Ratregion
5088165AU04840616015107060175107060332Ratregion
5084876AI22943718215106468712106468893Ratregion
5086455BE10632018915105694884105695072Ratregion
5500521RH13585213215105795607105795738Ratregion
5502263C7694120515106289890106291520Ratregion
5502525RH1251918515105795728105795812Ratregion
5502639RH12606624315106291461106292161Ratregion
Position Markers

Flank 1: (D15Rat40)
Rat AssemblyChrPosition (strand)Source
Celera1576,226,865 - 76,227,019UniSTS
RH 2.0 Map15404.7RGD
SHRSP x BN Map1549.5298RGD
FHH x ACI Map1563.69RGD
Cytogenetic Map15q21UniSTS
Peak: (D15Rat50)
Rat AssemblyChrPosition (strand)Source
Rnor_6.015106,858,673 - 106,858,877NCBI
Rnor_5.015110,253,053 - 110,253,257UniSTS
RGSC_v3.415106,606,473 - 106,606,827RGD
RGSC_v3.415106,606,595 - 106,606,799UniSTS
RGSC_v3.115106,622,253 - 106,622,607RGD
RH 3.4 Map15708.8UniSTS
RH 3.4 Map15708.8RGD
RH 2.0 Map15607.1RGD
SHRSP x BN Map1566.5498RGD
Flank 2: (D15Rat27)
Rat AssemblyChrPosition (strand)Source
Rnor_6.015108,368,891 - 108,369,033NCBI
Rnor_5.015111,756,447 - 111,756,589UniSTS
RGSC_v3.415107,060,381 - 107,060,711RGD
RGSC_v3.415107,060,557 - 107,060,699UniSTS
RGSC_v3.115107,076,337 - 107,076,479RGD
Celera1597,815,670 - 97,815,812UniSTS
RH 3.4 Map15706.5UniSTS
RH 3.4 Map15706.5RGD
RH 2.0 Map15609.8RGD
SHRSP x BN Map1566.4899RGD
FHH x ACI Map1574.04RGD
Cytogenetic Map15q25UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1526381041106550657Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1526381041106550657Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1526381041106550657Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1543097470106550657Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)1561447766106447766Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1565520564110520564Rat
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1575527634111246239Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1575761024109400896Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)1581255292109133904Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1583947714111246239Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1584050550111246239Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1584050550111246239Rat
1300118Bp190Blood pressure QTL 1902.94arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)1589640684106550657Rat
1300120Kidm7Kidney mass QTL 73.55kidney mass (VT:0002707)left kidney wet weight to body weight ratio (CMO:0001954)1589640684106550657Rat
1358354Srcrt5Stress Responsive Cort QTL 53.38blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)15105348517108369033Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general number of animals used: 486 F2 animals 1598980
qtl_general software package used: Pseudomarker (release 1.02) 1598980