LOC120097316 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120097316 (U6 spliceosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120097316
Name: U6 spliceosomal RNA
RGD ID: 41397731
Description:
Type: snrna
RefSeq Status: MODEL
Previously known as: U6
RGD Orthologs
Human
Dog
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81587,787,858 - 87,787,964 (+)NCBIGRCr8
mRatBN7.21581,373,249 - 81,373,355 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1581,373,249 - 81,373,355 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1588,744,269 - 88,744,375 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map15q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC120097316
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81587,787,858 - 87,787,964 (+)NCBIGRCr8
mRatBN7.21581,373,249 - 81,373,355 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1581,373,249 - 81,373,355 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1588,744,269 - 88,744,375 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map15q22NCBI
RNU6-1322P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387105,332,790 - 105,332,896 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7105,332,790 - 105,332,896 (+)EnsemblGRCh38hg38GRCh38
GRCh377104,973,237 - 104,973,343 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map7q22.3NCBI
CHM1_17104,906,549 - 104,906,655 (+)NCBICHM1_1
T2T-CHM13v2.07106,647,451 - 106,647,557 (+)NCBIT2T-CHM13v2.0
LOC119864538
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1911,228,972 - 11,229,078 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01911,131,982 - 11,132,088 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1911,131,982 - 11,132,088 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11911,110,774 - 11,110,880 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01911,399,464 - 11,399,570 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01911,854,695 - 11,854,801 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in LOC120097316
1 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
61477Aia4Adjuvant induced arthritis QTL 43joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)155559608991365858Rat
631516Gluco31Glucose level QTL 317blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)155559608995018120Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1558156477101769107Rat
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1567588667101769107Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1568327165100062518Rat
1331724Bp223Blood pressure QTL 2233.53715arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)157369051895018228Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)157369051899794247Rat
70182BpQTLcluster12Blood pressure QTL cluster 123.53arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)157369065795018120Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1575788062101769107Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1575788062101769107Rat
1581555Eae19Experimental allergic encephalomyelitis QTL 194.7nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)157630609990088744Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1576306099101769107Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005494525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000088801
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1581,373,249 - 81,373,355 (+)Ensembl
RefSeq Acc Id: XR_005494525
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81587,787,858 - 87,787,964 (+)NCBI
mRatBN7.21581,373,249 - 81,373,355 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-12647 BioCyc
Ensembl Genes ENSRNOG00000054276 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000088801 ENTREZGENE
NCBI Gene LOC120097316 ENTREZGENE
PhenoGen LOC120097316 PhenoGen
RatGTEx ENSRNOG00000054276 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120097316  U6 spliceosomal RNA  U6  U6 spliceosomal RNA  Data merged from RGD:15008557 737654 PROVISIONAL
2021-01-27 LOC120097316  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U6  U6 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL