Rbm26 (RNA binding motif protein 26) - Rat Genome Database
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Gene: Rbm26 (RNA binding motif protein 26) Rattus norvegicus
Analyze
Symbol: Rbm26
Name: RNA binding motif protein 26
RGD ID: 1308297
Description: Predicted to have metal ion binding activity. Predicted to be involved in negative regulation of phosphatase activity. Orthologous to human RBM26 (RNA binding motif protein 26); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; amphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC306137; RGD1308297; RNA-binding protein 26; similar to CG10084-PA
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21581,884,783 - 81,964,245 (-)NCBI
Rnor_6.0 Ensembl1589,266,710 - 89,339,323 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01589,262,683 - 89,339,323 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01592,753,570 - 92,831,611 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41589,173,025 - 89,246,959 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11589,187,355 - 89,260,660 (-)NCBI
Celera1581,013,870 - 81,085,087 (-)NCBICelera
Cytogenetic Map15q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA)

Molecular Function

References

Additional References at PubMed
PMID:12477932   PMID:19389623   PMID:22658674   PMID:22681889  


Genomics

Comparative Map Data
Rbm26
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21581,884,783 - 81,964,245 (-)NCBI
Rnor_6.0 Ensembl1589,266,710 - 89,339,323 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01589,262,683 - 89,339,323 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01592,753,570 - 92,831,611 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41589,173,025 - 89,246,959 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11589,187,355 - 89,260,660 (-)NCBI
Celera1581,013,870 - 81,085,087 (-)NCBICelera
Cytogenetic Map15q22NCBI
RBM26
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1379,311,824 - 79,406,477 (-)EnsemblGRCh38hg38GRCh38
GRCh381379,311,827 - 79,406,255 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371379,893,003 - 79,980,390 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361378,792,090 - 78,877,924 (-)NCBINCBI36hg18NCBI36
Build 341378,792,099 - 78,877,924NCBI
Celera1360,793,978 - 60,881,186 (-)NCBI
Cytogenetic Map13q31.1NCBI
HuRef1360,597,273 - 60,682,935 (-)NCBIHuRef
CHM1_11379,860,796 - 79,947,852 (-)NCBICHM1_1
Rbm26
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914105,344,187 - 105,418,475 (-)NCBIGRCm39mm39
GRCm39 Ensembl14105,344,187 - 105,414,763 (-)Ensembl
GRCm3814105,106,751 - 105,181,039 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14105,106,751 - 105,177,327 (-)EnsemblGRCm38mm10GRCm38
MGSCv3714105,513,736 - 105,576,544 (-)NCBIGRCm37mm9NCBIm37
MGSCv3614104,001,814 - 104,062,943 (-)NCBImm8
Celera14103,728,470 - 103,791,263 (-)NCBICelera
Cytogenetic Map14E2.3NCBI
cM Map1455.37NCBI
Rbm26
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540428,114,576 - 28,198,856 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540428,116,009 - 28,198,878 (+)NCBIChiLan1.0ChiLan1.0
RBM26
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11379,576,833 - 79,671,485 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1379,585,632 - 79,670,999 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01360,547,197 - 60,642,551 (-)NCBIMhudiblu_PPA_v0panPan3
RBM26
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2232,581,825 - 32,664,714 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12232,579,401 - 32,664,370 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Rbm26
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365112,175,192 - 2,252,955 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBM26
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1151,337,488 - 51,420,865 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11151,337,388 - 51,421,746 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21156,088,993 - 56,173,838 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBM26
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1358,366,214 - 58,457,989 (-)NCBI
ChlSab1.1 Ensembl358,371,352 - 58,457,535 (-)Ensembl
Rbm26
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475121,027,984 - 21,122,153 (+)NCBI

Position Markers
AU017719  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01589,284,330 - 89,284,425NCBIRnor6.0
Rnor_5.01592,776,881 - 92,776,976UniSTSRnor5.0
RGSC_v3.41589,188,143 - 89,188,238UniSTSRGSC3.4
Celera1581,029,920 - 81,030,015UniSTS
Cytogenetic Map15q22UniSTS
RH131185  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01589,269,294 - 89,269,483NCBIRnor6.0
Rnor_5.01592,761,845 - 92,762,034UniSTSRnor5.0
RGSC_v3.41589,173,107 - 89,173,296UniSTSRGSC3.4
Celera1581,014,884 - 81,015,073UniSTS
RH 3.4 Map15549.0UniSTS
Cytogenetic Map15q22UniSTS
BE109259  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01589,289,221 - 89,289,381NCBIRnor6.0
Rnor_5.01592,781,772 - 92,781,932UniSTSRnor5.0
RGSC_v3.41589,193,034 - 89,193,194UniSTSRGSC3.4
Celera1581,034,811 - 81,034,971UniSTS
Cytogenetic Map15q22UniSTS
MARC_16477-16478:1019839220:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01589,306,751 - 89,306,835NCBIRnor6.0
Rnor_6.01589,306,751 - 89,307,434NCBIRnor6.0
Rnor_5.01592,798,871 - 92,799,554UniSTSRnor5.0
Rnor_5.01592,798,871 - 92,798,955UniSTSRnor5.0
RGSC_v3.41589,210,876 - 89,210,960UniSTSRGSC3.4
RGSC_v3.41589,210,876 - 89,211,559UniSTSRGSC3.4
Celera1581,052,502 - 81,052,586UniSTS
Celera1581,052,502 - 81,053,185UniSTS
Cytogenetic Map15q22UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1526381041106550657Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1526381041106550657Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1526381041106550657Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)153321910189640841Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)153321910189640841Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)153321910189640841Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)153321910189640841Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)153321910189640841Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1543097470106550657Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)1561447766106447766Rat
61477Aia4Adjuvant induced arthritis QTL 43joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)156259641099372139Rat
631516Gluco31Glucose level QTL 317blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1562596410103164962Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1565520564110520564Rat
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1575527634111246239Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1575761024109400896Rat
1331724Bp223Blood pressure QTL 2233.53715arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1581255292103165069Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)1581255292109133904Rat
70182BpQTLcluster12Blood pressure QTL cluster 123.53arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)1581255430103164962Rat
1581555Eae19Experimental allergic encephalomyelitis QTL 194.7nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)158394771498027710Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1583947714111246239Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1584050550111246239Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1584050550111246239Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:131
Count of miRNA genes:98
Interacting mature miRNAs:109
Transcripts:ENSRNOT00000013255, ENSRNOT00000013297, ENSRNOT00000066433
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 36 50 34 19 34 8 8 74 34 41 11 8
Low 7 7 7 7 3 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001277160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_009612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC082039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FN801746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000013255   ⟹   ENSRNOP00000013255
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1589,266,710 - 89,339,037 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000013297   ⟹   ENSRNOP00000013297
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1589,268,280 - 89,339,323 (-)Ensembl
RefSeq Acc Id: NM_001277160   ⟹   NP_001264089
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21581,893,062 - 81,964,118 (-)NCBI
Rnor_6.01589,268,280 - 89,339,323 (-)NCBI
Rnor_5.01592,753,570 - 92,831,611 (-)NCBI
Celera1581,013,870 - 81,085,087 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006252422   ⟹   XP_006252484
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21581,884,783 - 81,964,244 (-)NCBI
Rnor_6.01589,262,683 - 89,338,986 (-)NCBI
Rnor_5.01592,753,570 - 92,831,611 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006252424   ⟹   XP_006252486
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01589,262,778 - 89,338,986 (-)NCBI
Rnor_5.01592,753,570 - 92,831,611 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006252425   ⟹   XP_006252487
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21581,884,783 - 81,964,245 (-)NCBI
Rnor_6.01589,262,683 - 89,338,986 (-)NCBI
Rnor_5.01592,753,570 - 92,831,611 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006252426   ⟹   XP_006252488
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01589,262,778 - 89,339,323 (-)NCBI
Rnor_5.01592,753,570 - 92,831,611 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006252427   ⟹   XP_006252489
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01589,262,778 - 89,338,986 (-)NCBI
Rnor_5.01592,753,570 - 92,831,611 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008770872   ⟹   XP_008769094
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01589,262,778 - 89,338,986 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039093403   ⟹   XP_038949331
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21581,884,783 - 81,964,244 (-)NCBI
RefSeq Acc Id: XM_039093404   ⟹   XP_038949332
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21581,892,060 - 81,964,244 (-)NCBI
RefSeq Acc Id: XM_039093405   ⟹   XP_038949333
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21581,884,783 - 81,964,244 (-)NCBI
RefSeq Acc Id: XM_039093406   ⟹   XP_038949334
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21581,884,783 - 81,964,243 (-)NCBI
RefSeq Acc Id: XM_039093407   ⟹   XP_038949335
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21581,884,783 - 81,964,244 (-)NCBI
RefSeq Acc Id: XM_039093408   ⟹   XP_038949336
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21581,884,783 - 81,964,245 (-)NCBI
RefSeq Acc Id: XM_039093409   ⟹   XP_038949337
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21581,884,783 - 81,964,243 (-)NCBI
RefSeq Acc Id: XM_039093410   ⟹   XP_038949338
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21581,911,571 - 81,964,245 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001264089   ⟸   NM_001277160
- UniProtKB: D3ZRC3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252487   ⟸   XM_006252425
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006252488   ⟸   XM_006252426
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006252489   ⟸   XM_006252427
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006252486   ⟸   XM_006252424
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006252484   ⟸   XM_006252422
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008769094   ⟸   XM_008770872
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000013297   ⟸   ENSRNOT00000013297
RefSeq Acc Id: ENSRNOP00000013255   ⟸   ENSRNOT00000013255
RefSeq Acc Id: XP_038949336   ⟸   XM_039093408
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038949335   ⟸   XM_039093407
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038949333   ⟸   XM_039093405
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038949331   ⟸   XM_039093403
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038949337   ⟸   XM_039093409
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038949334   ⟸   XM_039093406
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038949332   ⟸   XM_039093404
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038949338   ⟸   XM_039093410
- Peptide Label: isoform X7
Protein Domains
C3H1-type   RRM

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699866
Promoter ID:EPDNEW_R10389
Type:initiation region
Name:Rbm26_1
Description:RNA binding motif protein 26
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01589,339,410 - 89,339,470EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Damaging Variants


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
15 92773712 92773713 T A snv SHR/NCrlPrin (KNAW), SHR/NHsd (KNAW), SHR/OlaIpcv (KNAW), IS-Tlk/Kyo (KyushuU), SHRSP/Gcrc (KNAW), IS/Kyo (KyushuU), SHR/OlaIpcvPrin (KNAW)


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
15 89281161 89281162 T A snv SHRSP/Gcrc (RGD), SHR/NHsd (RGD)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308297 AgrOrtholog
Ensembl Genes ENSRNOG00000009836 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000013255 UniProtKB/TrEMBL
  ENSRNOP00000013297 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000013255 UniProtKB/TrEMBL
  ENSRNOT00000013297 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7131439 IMAGE-MGC_LOAD
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  PWI UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RBM26 UniProtKB/TrEMBL
  RBM26-like_RRM2 UniProtKB/TrEMBL
  RBM26_RRM1 UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
  Znf_CCCH UniProtKB/TrEMBL
KEGG Report rno:306137 UniProtKB/TrEMBL
MGC_CLONE MGC:95182 IMAGE-MGC_LOAD
NCBI Gene RGD1308297 ENTREZGENE
PANTHER PTHR14398:SF2 UniProtKB/TrEMBL
Pfam PWI UniProtKB/TrEMBL
PhenoGen Rbm26 PhenoGen
PROSITE RRM UniProtKB/TrEMBL
  ZF_C3H1 UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
  ZnF_C3H1 UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt D3ZRC3 ENTREZGENE, UniProtKB/TrEMBL
  D3ZRG7_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-22 Rbm26  RNA binding motif protein 26  RGD1308297  similar to CG10084-PA  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1308297  similar to CG10084-PA  RGD1308297_predicted  similar to CG10084-PA (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1308297_predicted  similar to CG10084-PA (predicted)  LOC306137_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC306137_predicted  similar to CG10084-PA (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL