Asnsd1-ps1 (asparagine synthetase domain containing 1, pseudogene 1) - Rat Genome Database

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Gene: Asnsd1-ps1 (asparagine synthetase domain containing 1, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Asnsd1-ps1
Name: asparagine synthetase domain containing 1, pseudogene 1
RGD ID: 1592109
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: hypothetical LOC290453; LOC290453
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81588,150,619 - 88,152,531 (+)NCBIGRCr8
mRatBN7.21581,736,087 - 81,737,952 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01589,114,672 - 89,116,568 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01592,606,536 - 92,608,432 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41589,025,684 - 89,027,549 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1580,861,197 - 80,863,093 (+)NCBICelera
Cytogenetic Map15q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Asnsd1-ps1
5 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1567588667101769107Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1575788062101769107Rat
61477Aia4Adjuvant induced arthritis QTL 43joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)155559608991365858Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1568327165100062518Rat
70182BpQTLcluster12Blood pressure QTL cluster 123.53arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)157369065795018120Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)152788577486257085Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1576306099101769107Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1581555Eae19Experimental allergic encephalomyelitis QTL 194.7nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)157630609990088744Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1558156477101769107Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
631516Gluco31Glucose level QTL 317blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)155559608995018120Rat
1331724Bp223Blood pressure QTL 2233.53715arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)157369051895018228Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)157369051899794247Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1575788062101769107Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat

Markers in Region
RH133567  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2948,138,753 - 48,138,953 (+)MAPPERmRatBN7.2
mRatBN7.21581,737,740 - 81,737,939 (+)MAPPERmRatBN7.2
Rnor_6.01589,116,357 - 89,116,555NCBIRnor6.0
Rnor_6.0953,008,735 - 53,008,934NCBIRnor6.0
Rnor_5.01592,608,221 - 92,608,419UniSTSRnor5.0
Rnor_5.0952,674,551 - 52,674,750UniSTSRnor5.0
RGSC_v3.41589,027,338 - 89,027,536UniSTSRGSC3.4
RGSC_v3.4945,088,737 - 45,088,936UniSTSRGSC3.4
Celera945,806,063 - 45,806,262UniSTS
Celera1580,862,882 - 80,863,080UniSTS
Cytogenetic Map9q22UniSTS
Cytogenetic Map15q22UniSTS


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XR_146317
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.01592,606,567 - 92,608,432 (+)NCBI
RefSeq Acc Id: XR_146638
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1580,861,228 - 80,863,093 (+)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-12634 BioCyc
NCBI Gene 290453 ENTREZGENE
PhenoGen Asnsd1-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Asnsd1-ps1  asparagine synthetase domain containing 1, pseudogene 1  LOC290453  hypothetical LOC290453  Symbol and Name Changed 1299863 APPROVED
2006-11-20 LOC290453  hypothetical LOC290453      Symbol and Name status set to provisional 70820 PROVISIONAL