Ubac2 (UBA domain containing 2) - Rat Genome Database

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Gene: Ubac2 (UBA domain containing 2) Rattus norvegicus
Analyze
Symbol: Ubac2
Name: UBA domain containing 2
RGD ID: 1311689
Description: Predicted to be involved in negative regulation of canonical Wnt signaling pathway and negative regulation of retrograde protein transport, ER to cytosol. Predicted to act upstream of or within protein localization to endoplasmic reticulum. Predicted to be located in endoplasmic reticulum. Orthologous to human UBAC2 (UBA domain containing 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrotoluene; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC361094; MGC125241; Phgdhl1; phosphoglycerate dehydrogenase like 1; ubiquitin-associated domain-containing protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21598,960,139 - 99,107,795 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1598,960,139 - 99,107,787 (+)Ensembl
Rnor_6.015108,286,407 - 108,433,531 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15108,286,453 - 108,433,529 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015111,674,945 - 111,821,086 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415107,009,509 - 107,125,419 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.115106,990,258 - 107,141,196 (+)NCBI
Celera1597,734,913 - 97,880,331 (+)NCBICelera
Cytogenetic Map15q25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:12477932   PMID:23297223   PMID:25660456   PMID:31073040  


Genomics

Comparative Map Data
Ubac2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21598,960,139 - 99,107,795 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1598,960,139 - 99,107,787 (+)Ensembl
Rnor_6.015108,286,407 - 108,433,531 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15108,286,453 - 108,433,529 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015111,674,945 - 111,821,086 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415107,009,509 - 107,125,419 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.115106,990,258 - 107,141,196 (+)NCBI
Celera1597,734,913 - 97,880,331 (+)NCBICelera
Cytogenetic Map15q25NCBI
UBAC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381399,200,854 - 99,386,504 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1399,200,774 - 99,386,504 (+)EnsemblGRCh38hg38GRCh38
GRCh371399,853,108 - 100,038,758 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361398,651,164 - 98,836,682 (+)NCBINCBI36hg18NCBI36
Build 341398,651,163 - 98,836,682NCBI
Celera1380,696,241 - 80,882,354 (+)NCBI
Cytogenetic Map13q32.3NCBI
HuRef1380,446,903 - 80,633,071 (+)NCBIHuRef
CHM1_11399,822,450 - 100,008,942 (+)NCBICHM1_1
Ubac2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914122,115,970 - 122,258,447 (+)NCBIGRCm39mm39
GRCm39 Ensembl14122,116,032 - 122,258,446 (+)Ensembl
GRCm3814121,878,559 - 122,021,035 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14121,878,620 - 122,021,034 (+)EnsemblGRCm38mm10GRCm38
MGSCv3714122,277,828 - 122,420,257 (+)NCBIGRCm37mm9NCBIm37
MGSCv3614122,277,828 - 122,420,257 (+)NCBImm8
Celera14120,439,908 - 120,582,638 (+)NCBICelera
Cytogenetic Map14E5NCBI
Ubac2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540411,205,585 - 11,357,370 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540411,205,972 - 11,357,370 (-)NCBIChiLan1.0ChiLan1.0
UBAC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11399,509,508 - 99,692,537 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1399,509,508 - 99,692,537 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01380,370,475 - 80,554,055 (+)NCBIMhudiblu_PPA_v0panPan3
UBAC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12249,246,210 - 49,425,611 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2249,245,930 - 49,425,088 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2249,027,436 - 49,206,830 (+)NCBI
ROS_Cfam_1.02249,687,669 - 49,867,389 (+)NCBI
ROS_Cfam_1.0 Ensembl2249,687,909 - 49,867,388 (+)Ensembl
UMICH_Zoey_3.12249,338,912 - 49,518,273 (+)NCBI
UNSW_CanFamBas_1.02249,373,235 - 49,552,802 (+)NCBI
UU_Cfam_GSD_1.02249,409,455 - 49,589,145 (+)NCBI
Ubac2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945184,674,992 - 184,833,929 (+)NCBI
SpeTri2.0NW_00493647211,118,227 - 11,278,636 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBAC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1168,145,101 - 68,319,939 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11168,144,835 - 68,319,771 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21175,379,506 - 75,620,322 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UBAC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1377,859,634 - 78,045,245 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl377,860,066 - 78,045,311 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604634,355,405 - 34,539,889 (+)NCBIVero_WHO_p1.0
Ubac2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479311,658,268 - 11,824,632 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
D15Rat27  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21599,043,148 - 99,043,291 (+)MAPPERmRatBN7.2
Rnor_6.015108,368,891 - 108,369,033NCBIRnor6.0
Rnor_5.015111,756,447 - 111,756,589UniSTSRnor5.0
RGSC_v3.415107,060,557 - 107,060,699UniSTSRGSC3.4
RGSC_v3.415107,060,381 - 107,060,711RGDRGSC3.4
RGSC_v3.115107,076,337 - 107,076,479RGD
Celera1597,815,670 - 97,815,812UniSTS
RH 3.4 Map15706.5RGD
RH 3.4 Map15706.5UniSTS
RH 2.0 Map15609.8RGD
SHRSP x BN Map1566.4899RGD
FHH x ACI Map1574.04RGD
Cytogenetic Map15q25UniSTS
AI408540  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21598,997,469 - 98,997,640 (+)MAPPERmRatBN7.2
Rnor_6.015108,323,200 - 108,323,370NCBIRnor6.0
Rnor_5.015111,710,756 - 111,710,926UniSTSRnor5.0
RGSC_v3.415107,014,866 - 107,015,036UniSTSRGSC3.4
Celera1597,769,912 - 97,770,082UniSTS
RH 3.4 Map15708.8UniSTS
Cytogenetic Map15q25UniSTS
RH127930  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21599,107,514 - 99,107,713 (+)MAPPERmRatBN7.2
Rnor_6.015108,433,257 - 108,433,455NCBIRnor6.0
Rnor_5.015111,820,813 - 111,821,011UniSTSRnor5.0
RGSC_v3.415107,125,146 - 107,125,344UniSTSRGSC3.4
Celera1597,880,058 - 97,880,256UniSTS
RH 3.4 Map15712.1UniSTS
Cytogenetic Map15q25UniSTS
BE120713  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21599,076,480 - 99,076,667 (+)MAPPERmRatBN7.2
Rnor_6.015108,402,222 - 108,402,408NCBIRnor6.0
Rnor_5.015111,789,778 - 111,789,964UniSTSRnor5.0
RGSC_v3.415107,093,888 - 107,094,074UniSTSRGSC3.4
Celera1597,849,001 - 97,849,187UniSTS
RH 3.4 Map15713.4UniSTS
Cytogenetic Map15q25UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1558156477101769107Rat
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1567588667101769107Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1568327165100062518Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)157369051899794247Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1575788062101769107Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1575788062101769107Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1576306099101769107Rat
1358354Srcrt5Stress Responsive Cort QTL 53.38blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)159815000199043291Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:372
Count of miRNA genes:183
Interacting mature miRNAs:203
Transcripts:ENSRNOT00000016986, ENSRNOT00000057469
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000016986   ⟹   ENSRNOP00000016986
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1598,960,139 - 99,107,787 (+)Ensembl
Rnor_6.0 Ensembl15108,286,453 - 108,433,529 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000057469   ⟹   ENSRNOP00000054278
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1598,964,432 - 99,107,787 (+)Ensembl
Rnor_6.0 Ensembl15108,318,664 - 108,433,529 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096210   ⟹   ENSRNOP00000092763
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1598,960,139 - 99,107,787 (+)Ensembl
RefSeq Acc Id: NM_001034937   ⟹   NP_001030109
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21598,960,139 - 99,107,788 (+)NCBI
Rnor_6.015108,286,453 - 108,433,530 (+)NCBI
Rnor_5.015111,674,945 - 111,821,086 (+)NCBI
RGSC_v3.415107,009,509 - 107,125,419 (+)RGD
Celera1597,734,913 - 97,880,331 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252509   ⟹   XP_006252571
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21598,960,163 - 99,107,795 (+)NCBI
Rnor_6.015108,286,407 - 108,433,531 (+)NCBI
Rnor_5.015111,674,945 - 111,821,086 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039093540   ⟹   XP_038949468
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21599,000,996 - 99,107,795 (+)NCBI
RefSeq Acc Id: XM_039093541   ⟹   XP_038949469
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21598,992,215 - 99,107,795 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001030109 (Get FASTA)   NCBI Sequence Viewer  
  XP_006252571 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949468 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949469 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI05843 (Get FASTA)   NCBI Sequence Viewer  
  EDM02570 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001030109   ⟸   NM_001034937
- UniProtKB: F1LQF5 (UniProtKB/TrEMBL),   Q3KR85 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252571   ⟸   XM_006252509
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000054278   ⟸   ENSRNOT00000057469
RefSeq Acc Id: ENSRNOP00000016986   ⟸   ENSRNOT00000016986
RefSeq Acc Id: XP_038949469   ⟸   XM_039093541
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038949468   ⟸   XM_039093540
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000092763   ⟸   ENSRNOT00000096210
Protein Domains
UBA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LQF5-F1-model_v2 AlphaFold F1LQF5 1-345 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699879
Promoter ID:EPDNEW_R10403
Type:initiation region
Name:Ubac2_1
Description:UBA domain containing 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.015108,286,516 - 108,286,576EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311689 AgrOrtholog
BioCyc Gene G2FUF-12368 BioCyc
Ensembl Genes ENSRNOG00000012710 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000016986 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000054278 UniProtKB/TrEMBL
  ENSRNOP00000092763 ENTREZGENE
Ensembl Transcript ENSRNOT00000016986 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000057469 UniProtKB/TrEMBL
  ENSRNOT00000096210 ENTREZGENE
Gene3D-CATH 1.20.1540.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7455960 IMAGE-MGC_LOAD
InterPro Rhomboid-like_sf UniProtKB/TrEMBL
  UBA-like UniProtKB/TrEMBL
  UBA/transl_elong_EF1B_N_euk UniProtKB/TrEMBL
  UBA_UBAC2 UniProtKB/TrEMBL
KEGG Report rno:361094 UniProtKB/TrEMBL
MGC_CLONE MGC:125241 IMAGE-MGC_LOAD
NCBI Gene 361094 ENTREZGENE
Pfam UBA UniProtKB/TrEMBL
PhenoGen Ubac2 PhenoGen
PROSITE UBA UniProtKB/TrEMBL
SMART UBA UniProtKB/TrEMBL
Superfamily-SCOP SSF144091 UniProtKB/TrEMBL
  UBA_like UniProtKB/TrEMBL
UniProt F1LQF5 ENTREZGENE, UniProtKB/TrEMBL
  Q3KR85 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-04-23 Ubac2  UBA domain containing 2  Phgdhl1  phosphoglycerate dehydrogenase like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Phgdhl1  phosphoglycerate dehydrogenase like 1  Phgdhl1_predicted  phosphoglycerate dehydrogenase like 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Phgdhl1_predicted  phosphoglycerate dehydrogenase like 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED