Ubac2 (UBA domain containing 2) - Rat Genome Database

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Gene: Ubac2 (UBA domain containing 2) Chinchilla lanigera
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Symbol: Ubac2
Name: UBA domain containing 2
RGD ID: 8909023
Description: INVOLVED IN negative regulation of canonical Wnt signaling pathway (ortholog); negative regulation of retrograde protein transport, ER to cytosol (ortholog); protein localization to endoplasmic reticulum (ortholog); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); holoprosencephaly 5 (ortholog); FOUND IN endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ubiquitin-associated domain-containing protein 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540411,205,585 - 11,357,370 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540411,205,972 - 11,357,370 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Ubac2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540411,205,585 - 11,357,370 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540411,205,972 - 11,357,370 (-)NCBIChiLan1.0ChiLan1.0
UBAC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1399,200,774 - 99,386,504 (+)EnsemblGRCh38hg38GRCh38
GRCh381399,200,425 - 99,386,504 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371399,853,108 - 100,038,758 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361398,651,164 - 98,836,682 (+)NCBINCBI36hg18NCBI36
Build 341398,651,163 - 98,836,682NCBI
Celera1380,696,241 - 80,882,354 (+)NCBI
Cytogenetic Map13q32.3NCBI
HuRef1380,446,903 - 80,633,071 (+)NCBIHuRef
CHM1_11399,822,450 - 100,008,942 (+)NCBICHM1_1
Ubac2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914122,115,970 - 122,258,447 (+)NCBIGRCm39mm39
GRCm39 Ensembl14122,116,032 - 122,258,446 (+)Ensembl
GRCm3814121,878,559 - 122,021,035 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14121,878,620 - 122,021,034 (+)EnsemblGRCm38mm10GRCm38
MGSCv3714122,277,828 - 122,420,257 (+)NCBIGRCm37mm9NCBIm37
MGSCv3614122,277,828 - 122,420,257 (+)NCBImm8
Celera14120,439,908 - 120,582,638 (+)NCBICelera
Cytogenetic Map14E5NCBI
Ubac2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21598,960,139 - 99,107,795 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1598,960,139 - 99,107,787 (+)Ensembl
Rnor_6.015108,286,407 - 108,433,531 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15108,286,453 - 108,433,529 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015111,674,945 - 111,821,086 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415107,009,509 - 107,125,419 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.115106,990,258 - 107,141,196 (+)NCBI
Celera1597,734,913 - 97,880,331 (+)NCBICelera
Cytogenetic Map15q25NCBI
UBAC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11399,509,508 - 99,692,537 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1399,509,508 - 99,692,537 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01380,370,475 - 80,554,055 (+)NCBIMhudiblu_PPA_v0panPan3
UBAC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12249,246,210 - 49,425,611 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2249,245,930 - 49,425,088 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2249,027,436 - 49,206,830 (+)NCBI
ROS_Cfam_1.02249,687,669 - 49,867,389 (+)NCBI
UMICH_Zoey_3.12249,338,912 - 49,518,273 (+)NCBI
UNSW_CanFamBas_1.02249,373,235 - 49,552,802 (+)NCBI
UU_Cfam_GSD_1.02249,409,455 - 49,589,145 (+)NCBI
Ubac2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945184,674,992 - 184,833,929 (+)NCBI
SpeTri2.0NW_00493647211,118,227 - 11,278,636 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBAC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1168,145,101 - 68,319,939 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11168,144,835 - 68,319,771 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21175,379,506 - 75,620,322 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UBAC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1377,859,634 - 78,045,245 (+)NCBI
ChlSab1.1 Ensembl377,860,066 - 78,045,311 (+)Ensembl
Vero_WHO_p1.0NW_02366604634,355,405 - 34,539,889 (+)NCBI
Ubac2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479311,658,268 - 11,824,632 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000005487   ⟹   ENSCLAP00000005391
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540411,205,585 - 11,357,370 (-)Ensembl
RefSeq Acc Id: XM_005374065   ⟹   XP_005374122
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540411,205,972 - 11,357,370 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005374122 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005374122   ⟸   XM_005374065
- Sequence:
RefSeq Acc Id: ENSCLAP00000005391   ⟸   ENSCLAT00000005487


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003826 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000005391 ENTREZGENE
Ensembl Transcript ENSCLAT00000005487 ENTREZGENE
NCBI Gene Ubac2 ENTREZGENE