Ubac2 (UBA domain containing 2) - Rat Genome Database

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Gene: Ubac2 (UBA domain containing 2) Chinchilla lanigera
Analyze
Symbol: Ubac2
Name: UBA domain containing 2
RGD ID: 8909023
Description: INVOLVED IN negative regulation of canonical Wnt signaling pathway (ortholog); negative regulation of retrograde protein transport, ER to cytosol (ortholog); protein localization to endoplasmic reticulum (ortholog); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); holoprosencephaly (ortholog); holoprosencephaly 5 (ortholog); FOUND IN endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ubiquitin-associated domain-containing protein 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540411,205,585 - 11,357,370 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540411,205,972 - 11,357,370 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Ubac2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540411,205,585 - 11,357,370 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540411,205,972 - 11,357,370 (-)NCBIChiLan1.0ChiLan1.0
UBAC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381399,200,854 - 99,386,504 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1399,200,774 - 99,386,504 (+)EnsemblGRCh38hg38GRCh38
GRCh371399,853,108 - 100,038,758 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361398,651,164 - 98,836,682 (+)NCBINCBI36Build 36hg18NCBI36
Build 341398,651,163 - 98,836,682NCBI
Celera1380,696,241 - 80,882,354 (+)NCBICelera
Cytogenetic Map13q32.3NCBI
HuRef1380,446,903 - 80,633,071 (+)NCBIHuRef
CHM1_11399,822,450 - 100,008,942 (+)NCBICHM1_1
T2T-CHM13v2.01398,411,009 - 98,596,811 (+)NCBIT2T-CHM13v2.0
Ubac2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914122,115,970 - 122,258,447 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14122,116,032 - 122,258,446 (+)EnsemblGRCm39 Ensembl
GRCm3814121,878,559 - 122,021,035 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14121,878,620 - 122,021,034 (+)EnsemblGRCm38mm10GRCm38
MGSCv3714122,277,828 - 122,420,257 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3614122,277,828 - 122,420,257 (+)NCBIMGSCv36mm8
Celera14120,439,908 - 120,582,638 (+)NCBICelera
Cytogenetic Map14E5NCBI
Ubac2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21598,960,139 - 99,107,795 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1598,960,139 - 99,107,787 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx15102,892,658 - 103,041,667 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.015103,987,216 - 104,133,671 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.015100,915,036 - 101,061,498 (+)NCBIRnor_WKY
Rnor_6.015108,286,407 - 108,433,531 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15108,286,453 - 108,433,529 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015111,674,945 - 111,821,086 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415107,009,509 - 107,125,419 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.115106,990,258 - 107,141,196 (+)NCBI
Celera1597,734,913 - 97,880,331 (+)NCBICelera
Cytogenetic Map15q25NCBI
UBAC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11399,509,508 - 99,692,537 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1399,509,508 - 99,692,537 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01380,370,475 - 80,554,055 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
UBAC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12249,246,210 - 49,425,611 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2249,245,930 - 49,425,088 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2249,027,436 - 49,206,830 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02249,687,669 - 49,867,389 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2249,687,909 - 49,867,388 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12249,338,912 - 49,518,273 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02249,373,235 - 49,552,802 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02249,409,455 - 49,589,145 (+)NCBIUU_Cfam_GSD_1.0
Ubac2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945184,674,992 - 184,833,929 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647211,118,218 - 11,277,301 (-)EnsemblSpeTri2.0
SpeTri2.0NW_00493647211,118,227 - 11,278,636 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBAC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1168,145,101 - 68,319,939 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11168,144,835 - 68,319,771 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21175,379,506 - 75,620,322 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UBAC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1377,859,634 - 78,045,245 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl377,860,066 - 78,045,311 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604634,355,405 - 34,539,889 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ubac2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479311,657,526 - 11,824,570 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479311,658,268 - 11,824,632 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000005487   ⟹   ENSCLAP00000005391
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540411,205,585 - 11,357,370 (-)Ensembl
RefSeq Acc Id: XM_005374065   ⟹   XP_005374122
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540411,205,972 - 11,357,370 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005374122 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005374122   ⟸   XM_005374065
- UniProtKB: A0A8C2UWS1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000005391   ⟸   ENSCLAT00000005487
Protein Domains
UBA


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003826 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000005391 ENTREZGENE
  ENSCLAP00000005391.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000005487 ENTREZGENE
  ENSCLAT00000005487.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1540.10 UniProtKB/TrEMBL
InterPro Rhomboid-like_sf UniProtKB/TrEMBL
  UBA UniProtKB/TrEMBL
  UBA-like_sf UniProtKB/TrEMBL
  UBA_UBAC2 UniProtKB/TrEMBL
NCBI Gene Ubac2 ENTREZGENE
Pfam UBA UniProtKB/TrEMBL
PROSITE UBA UniProtKB/TrEMBL
SMART UBA UniProtKB/TrEMBL
Superfamily-SCOP SSF144091 UniProtKB/TrEMBL
  SSF46934 UniProtKB/TrEMBL
UniProt A0A8C2UWS1 ENTREZGENE, UniProtKB/TrEMBL