UBAC2 (UBA domain containing 2) - Rat Genome Database

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Gene: UBAC2 (UBA domain containing 2) Canis lupus familiaris
Analyze
Symbol: UBAC2
Name: UBA domain containing 2
RGD ID: 12224251
Description: INVOLVED IN negative regulation of canonical Wnt signaling pathway (ortholog); negative regulation of retrograde protein transport, ER to cytosol (ortholog); protein localization to endoplasmic reticulum (ortholog); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); holoprosencephaly 5 (ortholog); FOUND IN endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ubiquitin-associated domain-containing protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12249,246,210 - 49,425,611 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2249,245,930 - 49,425,088 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2249,027,436 - 49,206,830 (+)NCBI
ROS_Cfam_1.02249,687,669 - 49,867,389 (+)NCBI
UMICH_Zoey_3.12249,338,912 - 49,518,273 (+)NCBI
UNSW_CanFamBas_1.02249,373,235 - 49,552,802 (+)NCBI
UU_Cfam_GSD_1.02249,409,455 - 49,589,145 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
UBAC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12249,246,210 - 49,425,611 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2249,245,930 - 49,425,088 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2249,027,436 - 49,206,830 (+)NCBI
ROS_Cfam_1.02249,687,669 - 49,867,389 (+)NCBI
UMICH_Zoey_3.12249,338,912 - 49,518,273 (+)NCBI
UNSW_CanFamBas_1.02249,373,235 - 49,552,802 (+)NCBI
UU_Cfam_GSD_1.02249,409,455 - 49,589,145 (+)NCBI
UBAC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1399,200,774 - 99,386,504 (+)EnsemblGRCh38hg38GRCh38
GRCh381399,200,425 - 99,386,504 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371399,853,108 - 100,038,758 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361398,651,164 - 98,836,682 (+)NCBINCBI36hg18NCBI36
Build 341398,651,163 - 98,836,682NCBI
Celera1380,696,241 - 80,882,354 (+)NCBI
Cytogenetic Map13q32.3NCBI
HuRef1380,446,903 - 80,633,071 (+)NCBIHuRef
CHM1_11399,822,450 - 100,008,942 (+)NCBICHM1_1
Ubac2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914122,115,970 - 122,258,447 (+)NCBIGRCm39mm39
GRCm39 Ensembl14122,116,032 - 122,258,446 (+)Ensembl
GRCm3814121,878,559 - 122,021,035 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14121,878,620 - 122,021,034 (+)EnsemblGRCm38mm10GRCm38
MGSCv3714122,277,828 - 122,420,257 (+)NCBIGRCm37mm9NCBIm37
MGSCv3614122,277,828 - 122,420,257 (+)NCBImm8
Celera14120,439,908 - 120,582,638 (+)NCBICelera
Cytogenetic Map14E5NCBI
Ubac2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21598,960,139 - 99,107,795 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1598,960,139 - 99,107,787 (+)Ensembl
Rnor_6.015108,286,407 - 108,433,531 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15108,286,453 - 108,433,529 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015111,674,945 - 111,821,086 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415107,009,509 - 107,125,419 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.115106,990,258 - 107,141,196 (+)NCBI
Celera1597,734,913 - 97,880,331 (+)NCBICelera
Cytogenetic Map15q25NCBI
Ubac2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540411,205,585 - 11,357,370 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540411,205,972 - 11,357,370 (-)NCBIChiLan1.0ChiLan1.0
UBAC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11399,509,508 - 99,692,537 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1399,509,508 - 99,692,537 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01380,370,475 - 80,554,055 (+)NCBIMhudiblu_PPA_v0panPan3
Ubac2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945184,674,992 - 184,833,929 (+)NCBI
SpeTri2.0NW_00493647211,118,227 - 11,278,636 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBAC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1168,145,101 - 68,319,939 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11168,144,835 - 68,319,771 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21175,379,506 - 75,620,322 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UBAC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1377,859,634 - 78,045,245 (+)NCBI
ChlSab1.1 Ensembl377,860,066 - 78,045,311 (+)Ensembl
Vero_WHO_p1.0NW_02366604634,355,405 - 34,539,889 (+)NCBI
Ubac2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479311,658,268 - 11,824,632 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014106385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022408120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038431362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038431363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038456613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038506749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038506750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038569945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038569946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038634105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038634106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000009338   ⟹   ENSCAFP00000008667
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2249,246,258 - 49,424,552 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000071397   ⟹   ENSCAFP00000062387
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2249,245,930 - 49,424,189 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000075215   ⟹   ENSCAFP00000065772
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2249,246,258 - 49,425,088 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000078547   ⟹   ENSCAFP00000048699
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2249,246,258 - 49,424,552 (+)Ensembl
RefSeq Acc Id: XM_014106385   ⟹   XP_013961860
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12249,246,210 - 49,425,611 (+)NCBI
Dog10K_Boxer_Tasha2249,027,436 - 49,206,830 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022408120   ⟹   XP_022263828
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12249,246,210 - 49,413,595 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038431362   ⟹   XP_038287290
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02249,687,865 - 49,867,389 (+)NCBI
RefSeq Acc Id: XM_038431363   ⟹   XP_038287291
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02249,687,669 - 49,867,389 (+)NCBI
RefSeq Acc Id: XM_038456613   ⟹   XP_038312541
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2249,027,631 - 49,206,830 (+)NCBI
RefSeq Acc Id: XM_038506749   ⟹   XP_038362677
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12249,339,036 - 49,518,273 (+)NCBI
RefSeq Acc Id: XM_038506750   ⟹   XP_038362678
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12249,338,912 - 49,518,273 (+)NCBI
RefSeq Acc Id: XM_038569945   ⟹   XP_038425873
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02249,409,650 - 49,589,145 (+)NCBI
RefSeq Acc Id: XM_038569946   ⟹   XP_038425874
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02249,409,455 - 49,589,145 (+)NCBI
RefSeq Acc Id: XM_038634105   ⟹   XP_038490033
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02249,373,430 - 49,552,802 (+)NCBI
RefSeq Acc Id: XM_038634106   ⟹   XP_038490034
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02249,373,235 - 49,552,802 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_013961860   ⟸   XM_014106385
- Peptide Label: isoform X2
- UniProtKB: F1PNS2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022263828   ⟸   XM_022408120
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCAFP00000048699   ⟸   ENSCAFT00000078547
RefSeq Acc Id: ENSCAFP00000008667   ⟸   ENSCAFT00000009338
RefSeq Acc Id: ENSCAFP00000065772   ⟸   ENSCAFT00000075215
RefSeq Acc Id: ENSCAFP00000062387   ⟸   ENSCAFT00000071397
RefSeq Acc Id: XP_038362678   ⟸   XM_038506750
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038362677   ⟸   XM_038506749
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038490034   ⟸   XM_038634106
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038490033   ⟸   XM_038634105
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038287291   ⟸   XM_038431363
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038287290   ⟸   XM_038431362
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038312541   ⟸   XM_038456613
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038425874   ⟸   XM_038569946
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038425873   ⟸   XM_038569945
- Peptide Label: isoform X1

Promoters
RGD ID:13687346
Promoter ID:EPDNEW_C5413
Type:initiation region
Name:UBAC2_1
Description:UBA domain containing 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12249,246,306 - 49,246,366EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000005799 Ensembl, ENTREZGENE
Ensembl Protein ENSCAFP00000065772 ENTREZGENE
NCBI Gene UBAC2 ENTREZGENE
UniProt F1PNS2 ENTREZGENE
VGNC ID VGNC:48043 ENTREZGENE