Cldn10 (claudin 10) - Rat Genome Database

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Gene: Cldn10 (claudin 10) Rattus norvegicus
Analyze
Symbol: Cldn10
Name: claudin 10
RGD ID: 1308027
Description: Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly; cell adhesion; and regulation of ion transport. Predicted to be located in cytoplasm. Predicted to be active in bicellular tight junction and plasma membrane. Orthologous to human CLDN10 (claudin 10); PARTICIPATES IN hepatitis C pathway; INTERACTS WITH 17beta-estradiol 3-benzoate; 2,2',4,4',5,5'-hexachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: claudin-10; LOC290485
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21595,862,785 - 95,954,526 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1595,862,760 - 95,954,526 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1599,772,662 - 99,864,437 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.015100,904,544 - 100,996,422 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01597,833,337 - 97,925,219 (+)NCBIRnor_WKY
Rnor_6.015104,026,590 - 104,115,748 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15104,026,601 - 104,115,748 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015107,450,003 - 107,539,150 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415103,699,243 - 103,793,405 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.115103,769,474 - 103,809,184 (+)NCBI
Celera1594,712,975 - 94,804,609 (+)NCBICelera
Cytogenetic Map15q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:16520537   PMID:18036336   PMID:18757308   PMID:28686597   PMID:28771254  


Genomics

Comparative Map Data
Cldn10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21595,862,785 - 95,954,526 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1595,862,760 - 95,954,526 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1599,772,662 - 99,864,437 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.015100,904,544 - 100,996,422 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01597,833,337 - 97,925,219 (+)NCBIRnor_WKY
Rnor_6.015104,026,590 - 104,115,748 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15104,026,601 - 104,115,748 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015107,450,003 - 107,539,150 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415103,699,243 - 103,793,405 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.115103,769,474 - 103,809,184 (+)NCBI
Celera1594,712,975 - 94,804,609 (+)NCBICelera
Cytogenetic Map15q24NCBI
CLDN10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381395,433,755 - 95,579,759 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1395,433,604 - 95,579,759 (+)EnsemblGRCh38hg38GRCh38
GRCh371396,086,009 - 96,232,013 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361394,883,859 - 95,029,907 (+)NCBINCBI36Build 36hg18NCBI36
Build 341394,883,858 - 95,029,907NCBI
Celera1376,933,662 - 77,079,797 (+)NCBICelera
Cytogenetic Map13q32.1NCBI
HuRef1376,683,603 - 76,829,764 (+)NCBIHuRef
CHM1_11396,056,017 - 96,202,145 (+)NCBICHM1_1
T2T-CHM13v2.01394,638,308 - 94,784,309 (+)NCBIT2T-CHM13v2.0
Cldn10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914119,025,283 - 119,111,937 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14119,025,320 - 119,112,901 (+)EnsemblGRCm39 Ensembl
GRCm3814118,787,871 - 118,874,525 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14118,787,908 - 118,875,489 (+)EnsemblGRCm38mm10GRCm38
MGSCv3714119,187,093 - 119,273,747 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3614117,701,416 - 117,788,616 (-)NCBIMGSCv36mm8
Celera14117,349,989 - 117,436,610 (+)NCBICelera
Cytogenetic Map14E4NCBI
cM Map1462.55NCBI
Cldn10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540414,483,217 - 14,597,938 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540414,483,217 - 14,597,912 (-)NCBIChiLan1.0ChiLan1.0
CLDN10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11395,763,745 - 95,909,161 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1395,763,980 - 95,909,161 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01376,728,572 - 76,755,685 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CLDN10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12246,098,671 - 46,225,239 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2246,098,933 - 46,225,153 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2245,882,250 - 46,009,455 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02246,526,400 - 46,653,623 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2246,627,780 - 46,653,447 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12246,190,438 - 46,316,829 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02246,223,654 - 46,350,727 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02246,230,094 - 46,356,645 (+)NCBIUU_Cfam_GSD_1.0
Cldn10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945181,723,167 - 181,745,660 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493647214,205,311 - 14,308,932 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLDN10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1165,027,732 - 65,147,242 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11165,027,706 - 65,145,002 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21171,983,331 - 72,006,790 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CLDN10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1374,239,087 - 74,379,699 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl374,352,400 - 74,377,978 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604630,664,874 - 30,806,787 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cldn10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248792,179,142 - 2,298,924 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248792,178,896 - 2,298,905 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
D15Got91  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21595,933,137 - 95,933,345 (+)MAPPERmRatBN7.2
Rnor_6.015104,094,198 - 104,094,405NCBIRnor6.0
Rnor_5.015107,517,600 - 107,517,807UniSTSRnor5.0
RGSC_v3.415103,772,017 - 103,772,225RGDRGSC3.4
RGSC_v3.415103,772,018 - 103,772,225UniSTSRGSC3.4
RGSC_v3.115103,787,798 - 103,788,005RGD
Celera1594,783,231 - 94,783,430UniSTS
RH 3.4 Map15664.1UniSTS
RH 3.4 Map15664.1RGD
RH 2.0 Map15577.2RGD
Cytogenetic Map15q24UniSTS
D15Got95  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21595,933,187 - 95,933,350 (+)MAPPERmRatBN7.2
Rnor_6.015104,094,248 - 104,094,410NCBIRnor6.0
Rnor_5.015107,517,650 - 107,517,812UniSTSRnor5.0
RGSC_v3.415103,772,067 - 103,772,230RGDRGSC3.4
RGSC_v3.415103,772,068 - 103,772,230UniSTSRGSC3.4
RGSC_v3.115103,787,848 - 103,788,010RGD
Celera1594,783,281 - 94,783,435UniSTS
RH 3.4 Map15676.3UniSTS
RH 3.4 Map15676.3RGD
RH 2.0 Map15589.6RGD
Cytogenetic Map15q24UniSTS
RH129792  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21595,954,193 - 95,954,373 (+)MAPPERmRatBN7.2
Rnor_6.015104,115,416 - 104,115,595NCBIRnor6.0
Rnor_5.015107,538,818 - 107,538,997UniSTSRnor5.0
RGSC_v3.415103,793,073 - 103,793,252UniSTSRGSC3.4
Celera1594,804,277 - 94,804,456UniSTS
RH 3.4 Map15667.5UniSTS
Cytogenetic Map15q24UniSTS
RH142393  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21595,954,177 - 95,954,373 (+)MAPPERmRatBN7.2
Rnor_6.015104,115,400 - 104,115,595NCBIRnor6.0
Rnor_5.015107,538,802 - 107,538,997UniSTSRnor5.0
RGSC_v3.415103,793,057 - 103,793,252UniSTSRGSC3.4
Celera1594,804,261 - 94,804,456UniSTS
RH 3.4 Map15654.5UniSTS
Cytogenetic Map15q24UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1558156477101769107Rat
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1567588667101769107Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1568327165100062518Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)157369051899794247Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1575788062101769107Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1575788062101769107Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1576306099101769107Rat
1300118Bp190Blood pressure QTL 1902.94arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)158226252098288169Rat
1300120Kidm7Kidney mass QTL 73.55kidney mass (VT:0002707)left kidney wet weight to body weight ratio (CMO:0001954)158226252098288169Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:73
Count of miRNA genes:53
Interacting mature miRNAs:59
Transcripts:ENSRNOT00000013520
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 21 27 4 3
Low 2 6 14 17 33 8 26 8
Below cutoff 33 30 28 2 28 7 8 20 7 7

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000013520   ⟹   ENSRNOP00000013520
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1595,862,785 - 95,954,526 (+)Ensembl
Rnor_6.0 Ensembl15104,026,601 - 104,115,748 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000083269   ⟹   ENSRNOP00000070015
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1595,862,760 - 95,954,526 (+)Ensembl
Rnor_6.0 Ensembl15104,026,602 - 104,115,745 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093403   ⟹   ENSRNOP00000076157
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1595,862,760 - 95,954,305 (+)Ensembl
Rnor_6.0 Ensembl15104,026,612 - 104,115,745 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093487   ⟹   ENSRNOP00000076076
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl15104,095,179 - 104,115,748 (+)Ensembl
RefSeq Acc Id: NM_001106058   ⟹   NP_001099528
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21595,862,785 - 95,954,526 (+)NCBI
Rnor_6.015104,026,601 - 104,115,748 (+)NCBI
Rnor_5.015107,450,003 - 107,539,150 (+)NCBI
RGSC_v3.415103,699,243 - 103,793,405 (+)RGD
Celera1594,712,975 - 94,804,609 (+)RGD
Sequence:
RefSeq Acc Id: XM_006252450   ⟹   XP_006252512
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21595,863,034 - 95,954,523 (+)NCBI
Rnor_6.015104,026,590 - 104,115,748 (+)NCBI
Rnor_5.015107,450,003 - 107,539,150 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039093199   ⟹   XP_038949127
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21595,863,034 - 95,954,523 (+)NCBI
RefSeq Acc Id: XM_039093200   ⟹   XP_038949128
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21595,934,104 - 95,954,523 (+)NCBI
RefSeq Acc Id: XM_039093201   ⟹   XP_038949129
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21595,863,034 - 95,954,523 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001099528   ⟸   NM_001106058
- UniProtKB: G3V7A9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252512   ⟸   XM_006252450
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JWU2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000076076   ⟸   ENSRNOT00000093487
RefSeq Acc Id: ENSRNOP00000076157   ⟸   ENSRNOT00000093403
RefSeq Acc Id: ENSRNOP00000070015   ⟸   ENSRNOT00000083269
RefSeq Acc Id: ENSRNOP00000013520   ⟸   ENSRNOT00000013520
RefSeq Acc Id: XP_038949127   ⟸   XM_039093199
- Peptide Label: isoform X2
- UniProtKB: A0A1W2Q674 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949129   ⟸   XM_039093201
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038949128   ⟸   XM_039093200
- Peptide Label: isoform X3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V7A9-F1-model_v2 AlphaFold G3V7A9 1-286 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699874
Promoter ID:EPDNEW_R10396
Type:multiple initiation site
Name:Cldn10_1
Description:claudin 10
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.015104,095,165 - 104,095,225EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308027 AgrOrtholog
BioCyc Gene G2FUF-12433 BioCyc
Ensembl Genes ENSRNOG00000010085 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000013520 ENTREZGENE
  ENSRNOP00000013520.2 UniProtKB/TrEMBL
  ENSRNOP00000070015 ENTREZGENE
  ENSRNOP00000070015.1 UniProtKB/TrEMBL
  ENSRNOP00000076157 ENTREZGENE
  ENSRNOP00000076157.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000013520 ENTREZGENE
  ENSRNOT00000013520.5 UniProtKB/TrEMBL
  ENSRNOT00000083269 ENTREZGENE
  ENSRNOT00000083269.3 UniProtKB/TrEMBL
  ENSRNOT00000093403 ENTREZGENE
  ENSRNOT00000093403.2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7378907 IMAGE-MGC_LOAD
InterPro Claudin UniProtKB/TrEMBL
  Claudin10 UniProtKB/TrEMBL
  Claudin_CS UniProtKB/TrEMBL
  PMP22/EMP/MP20/Claudin UniProtKB/TrEMBL
KEGG Report rno:290485 UniProtKB/TrEMBL
MGC_CLONE MGC:188274 IMAGE-MGC_LOAD
NCBI Gene 290485 ENTREZGENE
PANTHER Claudin UniProtKB/TrEMBL
  PTHR12002:SF13 UniProtKB/TrEMBL
Pfam PMP22_Claudin UniProtKB/TrEMBL
PhenoGen Cldn10 PhenoGen
PRINTS CLAUDIN10 UniProtKB/TrEMBL
PROSITE CLAUDIN UniProtKB/TrEMBL
UniProt A0A0G2JWU2 ENTREZGENE, UniProtKB/TrEMBL
  A0A1W2Q674 ENTREZGENE, UniProtKB/TrEMBL
  B0BNH7_RAT UniProtKB/TrEMBL
  G3V7A9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Cldn10  claudin 10   Cldn10_predicted  claudin 10 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Cldn10_predicted  claudin 10 (predicted)      Symbol and Name status set to approved 70820 APPROVED