Lmo7 (LIM domain 7) - Rat Genome Database
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Gene: Lmo7 (LIM domain 7) Rattus norvegicus
Analyze
Symbol: Lmo7
Name: LIM domain 7
RGD ID: 1302984
Description: Exhibits actinin binding activity and protein C-terminus binding activity. Involved in positive regulation of transcription by RNA polymerase II. Localizes to adherens junction and apical plasma membrane. Orthologous to human LMO7 (LIM domain 7); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LIM domain only 7; LIM domain only protein 7; TGF-beta induced protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21578,567,029 - 78,769,833 (+)NCBI
Rnor_6.0 Ensembl1586,243,148 - 86,457,739 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01586,242,911 - 86,458,512 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01587,780,294 - 87,997,103 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41585,710,975 - 85,928,469 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11585,726,754 - 85,944,249 (+)NCBI
Celera1577,758,335 - 77,960,326 (+)NCBICelera
Cytogenetic Map15q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(S)-nicotine  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acetylsalicylic acid  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
aflatoxin B2  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amphetamine  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
Benzo[k]fluoranthene  (ISO)
beta-naphthoflavone  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
carbon nanotube  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cocaine  (EXP)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cycloheximide  (ISO)
cyclosporin A  (ISO)
diethyl maleate  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
flurbiprofen  (ISO)
folic acid  (ISO)
geldanamycin  (ISO)
hexadecanoic acid  (ISO)
hydrogen peroxide  (ISO)
irinotecan  (EXP)
L-methionine  (ISO)
levofloxacin  (EXP)
mercury dibromide  (ISO)
methamphetamine  (ISO)
methylmercury chloride  (ISO)
morphine  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
nicotine  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
panobinostat  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sunitinib  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
toluene  (EXP)
topotecan  (EXP)
tremolite asbestos  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vancomycin  (ISO)
venlafaxine hydrochloride  (ISO)
vinclozolin  (EXP)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
adherens junction  (IDA)
apical plasma membrane  (IDA,ISO)
cell surface  (ISO,ISS)
cytoplasm  (ISO,ISS)
nuclear envelope  (ISO,ISS)
nucleoplasm  (ISO)
nucleus  (ISO,ISS)
plasma membrane  (ISO)

Molecular Function

References

Additional References at PubMed
PMID:15737692   PMID:19028597   PMID:19215226   PMID:21423176   PMID:21525034   PMID:24625528   PMID:25002582   PMID:26370512   PMID:30361391  


Genomics

Comparative Map Data
Lmo7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21578,567,029 - 78,769,833 (+)NCBI
Rnor_6.0 Ensembl1586,243,148 - 86,457,739 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01586,242,911 - 86,458,512 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01587,780,294 - 87,997,103 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41585,710,975 - 85,928,469 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11585,726,754 - 85,944,249 (+)NCBI
Celera1577,758,335 - 77,960,326 (+)NCBICelera
Cytogenetic Map15q21NCBI
LMO7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1375,620,434 - 75,859,870 (+)EnsemblGRCh38hg38GRCh38
GRCh381375,620,434 - 75,859,870 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371376,194,570 - 76,434,006 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361375,092,571 - 75,332,003 (+)NCBINCBI36hg18NCBI36
Build 341375,092,570 - 75,332,002NCBI
Celera1357,092,445 - 57,331,882 (+)NCBI
Cytogenetic Map13q22.2NCBI
HuRef1356,891,721 - 57,131,153 (+)NCBIHuRef
CHM1_11376,162,285 - 76,401,623 (+)NCBICHM1_1
Lmo7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914101,967,353 - 102,172,144 (+)NCBIGRCm39mm39
GRCm39 Ensembl14101,967,393 - 102,172,146 (+)Ensembl
GRCm3814101,729,928 - 101,934,708 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14101,729,957 - 101,934,710 (+)EnsemblGRCm38mm10GRCm38
MGSCv3714102,129,145 - 102,333,910 (+)NCBIGRCm37mm9NCBIm37
MGSCv3614100,616,519 - 100,821,316 (+)NCBImm8
Celera14100,369,410 - 100,570,067 (+)NCBICelera
Cytogenetic Map14E2.3NCBI
cM Map1450.9NCBI
Lmo7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540431,196,312 - 31,388,258 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540431,197,156 - 31,388,571 (-)NCBIChiLan1.0ChiLan1.0
LMO7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11375,893,269 - 76,130,080 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1375,894,529 - 76,130,080 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01356,846,724 - 57,084,178 (+)NCBIMhudiblu_PPA_v0panPan3
LMO7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12229,415,374 - 29,619,215 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2229,415,337 - 29,618,667 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2229,276,170 - 29,479,940 (+)NCBI
ROS_Cfam_1.02229,750,469 - 29,947,955 (+)NCBI
UMICH_Zoey_3.12229,401,034 - 29,598,351 (+)NCBI
UNSW_CanFamBas_1.02229,444,631 - 29,641,926 (+)NCBI
UU_Cfam_GSD_1.02229,513,289 - 29,710,649 (+)NCBI
Lmo7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_ltri_2NW_024404945129,875,508 - 130,083,555 (-)NCBI
SpeTri2.0NW_0049365115,292,737 - 5,501,374 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LMO7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1147,911,096 - 48,133,446 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11147,911,076 - 48,133,449 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21152,681,961 - 52,709,628 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LMO7
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1354,647,783 - 54,954,970 (+)NCBI
ChlSab1.1 Ensembl354,736,294 - 54,957,721 (+)Ensembl
ChlSab1.1 Ensembl354,647,590 - 54,706,497 (+)Ensembl
Lmo7
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475124,636,636 - 24,855,515 (-)NCBI

Position Markers
BF413319  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01586,416,552 - 86,416,643NCBIRnor6.0
Rnor_5.01587,955,155 - 87,955,246UniSTSRnor5.0
RGSC_v3.41585,887,282 - 85,887,373UniSTSRGSC3.4
Celera1577,919,087 - 77,919,178UniSTS
RH 3.4 Map15545.6UniSTS
Cytogenetic Map15q21UniSTS
AI008211  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01586,424,465 - 86,424,656NCBIRnor6.0
Rnor_5.01587,963,068 - 87,963,259UniSTSRnor5.0
RGSC_v3.41585,895,195 - 85,895,386UniSTSRGSC3.4
Celera1577,927,000 - 77,927,191UniSTS
RH 3.4 Map15504.1UniSTS
Cytogenetic Map15q21UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151851391388036354Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1526381041106550657Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1526381041106550657Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1526381041106550657Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)153321910189640841Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)153321910189640841Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)153321910189640841Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)153321910189640841Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)153321910189640841Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1543097470106550657Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)1561447766106447766Rat
61477Aia4Adjuvant induced arthritis QTL 43joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)156259641099372139Rat
631516Gluco31Glucose level QTL 317blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1562596410103164962Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1565520564110520564Rat
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1575527634111246239Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1575761024109400896Rat
1331724Bp223Blood pressure QTL 2233.53715arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1581255292103165069Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)1581255292109133904Rat
70182BpQTLcluster12Blood pressure QTL cluster 123.53arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)1581255430103164962Rat
1581555Eae19Experimental allergic encephalomyelitis QTL 194.7nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)158394771498027710Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1583947714111246239Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1584050550111246239Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1584050550111246239Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:95
Count of miRNA genes:87
Interacting mature miRNAs:90
Transcripts:ENSRNOT00000032917
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 11 1 16 1 8 10 27 29 8 11 8
Low 46 40 3 40 1 47 6 33
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001001515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AY533473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY533474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY609384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000084471   ⟹   ENSRNOP00000074706
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1586,243,148 - 86,457,739 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000090727   ⟹   ENSRNOP00000071726
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1586,243,148 - 86,457,739 (+)Ensembl
RefSeq Acc Id: NM_001001515   ⟹   NP_001001515
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21578,567,213 - 78,769,060 (+)NCBI
Rnor_6.01586,243,148 - 86,457,739 (+)NCBI
Rnor_5.01587,780,294 - 87,997,103 (+)NCBI
RGSC_v3.41585,710,975 - 85,928,469 (+)RGD
Celera1577,758,335 - 77,960,326 (+)RGD
Sequence:
RefSeq Acc Id: XM_006252397   ⟹   XP_006252459
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21578,567,033 - 78,769,821 (+)NCBI
Rnor_6.01586,242,911 - 86,458,512 (+)NCBI
Rnor_5.01587,780,294 - 87,997,103 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252399   ⟹   XP_006252461
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21578,567,044 - 78,769,821 (+)NCBI
Rnor_6.01586,242,914 - 86,458,512 (+)NCBI
Rnor_5.01587,780,294 - 87,997,103 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252400   ⟹   XP_006252462
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21578,567,043 - 78,769,821 (+)NCBI
Rnor_6.01586,242,914 - 86,458,512 (+)NCBI
Rnor_5.01587,780,294 - 87,997,103 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252401   ⟹   XP_006252463
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21578,567,046 - 78,769,821 (+)NCBI
Rnor_6.01586,242,915 - 86,458,512 (+)NCBI
Rnor_5.01587,780,294 - 87,997,103 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599749   ⟹   XP_017455238
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01586,242,911 - 86,458,512 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599750   ⟹   XP_017455239
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21578,567,032 - 78,769,821 (+)NCBI
Rnor_6.01586,242,911 - 86,458,512 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599751   ⟹   XP_017455240
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21578,672,343 - 78,769,833 (+)NCBI
Rnor_6.01586,360,544 - 86,458,512 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599752   ⟹   XP_017455241
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21578,656,475 - 78,769,833 (+)NCBI
Rnor_6.01586,345,190 - 86,458,512 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599753   ⟹   XP_017455242
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21578,701,340 - 78,769,833 (+)NCBI
Rnor_6.01586,390,025 - 86,458,512 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599754   ⟹   XP_017455243
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21578,567,042 - 78,769,821 (+)NCBI
Rnor_6.01586,242,914 - 86,458,512 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039093519   ⟹   XP_038949447
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21578,567,031 - 78,769,821 (+)NCBI
RefSeq Acc Id: XM_039093520   ⟹   XP_038949448
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21578,567,029 - 78,769,821 (+)NCBI
RefSeq Acc Id: XM_039093521   ⟹   XP_038949449
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21578,567,029 - 78,769,821 (+)NCBI
RefSeq Acc Id: XM_039093522   ⟹   XP_038949450
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21578,567,030 - 78,769,821 (+)NCBI
RefSeq Acc Id: XM_039093523   ⟹   XP_038949451
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21578,567,032 - 78,769,821 (+)NCBI
RefSeq Acc Id: XM_039093524   ⟹   XP_038949452
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21578,567,030 - 78,769,821 (+)NCBI
RefSeq Acc Id: XM_039093525   ⟹   XP_038949453
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21578,567,031 - 78,769,821 (+)NCBI
RefSeq Acc Id: XM_039093527   ⟹   XP_038949455
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21578,567,033 - 78,769,821 (+)NCBI
RefSeq Acc Id: XM_039093528   ⟹   XP_038949456
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21578,672,347 - 78,769,833 (+)NCBI
RefSeq Acc Id: XM_039093529   ⟹   XP_038949457
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21578,672,971 - 78,769,833 (+)NCBI
RefSeq Acc Id: XM_039093530   ⟹   XP_038949458
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21578,672,346 - 78,769,833 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001001515   ⟸   NM_001001515
- UniProtKB: Q6JBI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252459   ⟸   XM_006252397
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_006252461   ⟸   XM_006252399
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_006252462   ⟸   XM_006252400
- Peptide Label: isoform X17
- Sequence:
RefSeq Acc Id: XP_006252463   ⟸   XM_006252401
- Peptide Label: isoform X18
- UniProtKB: A0A0G2K174 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017455239   ⟸   XM_017599750
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017455238   ⟸   XM_017599749
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017455243   ⟸   XM_017599754
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_017455241   ⟸   XM_017599752
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_017455240   ⟸   XM_017599751
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_017455242   ⟸   XM_017599753
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: ENSRNOP00000074706   ⟸   ENSRNOT00000084471
RefSeq Acc Id: ENSRNOP00000071726   ⟸   ENSRNOT00000090727
RefSeq Acc Id: XP_038949449   ⟸   XM_039093521
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038949448   ⟸   XM_039093520
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038949450   ⟸   XM_039093522
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038949452   ⟸   XM_039093524
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038949447   ⟸   XM_039093519
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038949453   ⟸   XM_039093525
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038949451   ⟸   XM_039093523
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038949455   ⟸   XM_039093527
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038949458   ⟸   XM_039093530
- Peptide Label: isoform X20
RefSeq Acc Id: XP_038949456   ⟸   XM_039093528
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038949457   ⟸   XM_039093529
- Peptide Label: isoform X19
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Damaging Variants


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
15 87780514 87780515 G A snv ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), SBH/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), LH/MavRrrc (KNAW), LL/MavRrrc (KNAW), LN/MavRrrc (KNAW), MR/N (KNAW), SR/JrHsd (KNAW), SS/Jr (KNAW), SS/JrHsdMcwi (KNAW), WAG/Rij (KNAW), ACI/N (KNAW), ACI/EurMcwi (KNAW), SBH/Ygl (KNAW), SHR/NCrlPrin (KNAW), SHR/NHsd (KNAW), SHR/OlaIpcv (KNAW), SHR/OlaIpcvPrin (KNAW), SHRSP/Gcrc (KNAW), F344/NRrrc (Illumina) (KNAW), WKY/Gcrc (KNAW), WKY/N (KNAW), WKY/NCrl (KNAW), WKY/NHsd (KNAW), BUF/N (KNAW), DA/BklArbNsi (KNAW), F344/NRrrc (SOLiD) (KNAW), F344/NCrl (KNAW), F344/NHsd (KNAW), GK/Ox (KNAW), LE/Stm (Illumina) (KNAW), LE/Stm (SOLiD) (KNAW), M520/N (KNAW), WN/N (KNAW), SDLEF7/Barth (UDEL), Crl:SD (UDEL), BUF/MNa (KyushuU), NIG-III/Hok (KyushuU), F344/DuCrlCrlj (KyushuU), LE/Stm (KyushuU), HTX/Kyo (KyushuU), F344/NSlc (KyushuU), RCS/Kyo (KyushuU), F344/Stm (KyushuU), LEC/Tj (KyushuU), F344/Jcl (KyushuU), BDIX/NemOda (KyushuU), DOB/Oda (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), ZFDM (KyushuU)
15 87940613 87940614 G A snv SBN/Ygl (MCW), SBN/Ygl (KNAW)
15 87944431 87944432 A G snv SBN/Ygl (KNAW), SBN/Ygl (MCW)
15 87947503 87947504 C T snv LE/Stm (Illumina) (KNAW), LE/Stm (SOLiD) (KNAW), LE/Stm (KyushuU)
15 87947865 87947866 C T snv LE/Stm (KyushuU), LE/Stm (SOLiD) (KNAW), LE/Stm (Illumina) (KNAW)
15 87960526 87960527 C T snv NIG-III/Hok (KyushuU), SBH/Ygl (MCW), SBH/Ygl (KNAW), ACI/EurMcwi (KNAW), ACI/N (KNAW), ACI/EurMcwi (MCW), DA/BklArbNsi (KNAW)
15 87980031 87980032 G T snv SHR/OlaIpcvPrin (KNAW), SHRSP/Gcrc (KNAW), GK/Ox (KNAW), SHR/OlaIpcv (KNAW), SHR/NHsd (KNAW), SHR/NCrlPrin (KNAW)
15 87981571 87981572 G A snv SS/JrHsdMcwi (MCW), SBH/Ygl (MCW), COP/CrCrl (MCW & UW), ACI/EurMcwi (MCW), KFRS3B/Kyo (KyushuU), LEC/Tj (KyushuU), HWY/Slc (KyushuU), F344/NSlc (KyushuU), SDLEF7/Barth (UDEL)
15 87981826 87981827 C T snv KFRS3B/Kyo (KyushuU), SS/JrHsdMcwi (MCW), SBH/Ygl (MCW), ACI/EurMcwi (MCW), F344/DuCrlCrlj (KyushuU), COP/CrCrl (MCW & UW), Crl:SD (UDEL), SDLEF7/Barth (UDEL)
15 87981852 87981853 G T snv ACI/EurMcwi (MCW), GH/OmrMcwi (MCW), KFRS3B/Kyo (KyushuU), Crl:SD (UDEL), COP/CrCrl (MCW & UW), SDLEF7/Barth (UDEL), SBH/Ygl (MCW), SS/JrHsdMcwi (MCW)
15 87985546 87985547 A G snv DOB/Oda (KyushuU)


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
15 86243184 86243185 G A snv ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), SBH/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), CDR, CDS, ACI/N (MCW), Buf/N (MCW), F344/NRrrc (MCW), M520/N (MCW), MR/N (MCW), WKY/N (MCW), WN/N (MCW), ACI/EurMcwi (RGD), F344/NCrl (RGD), GK/Ox (RGD), LE/Stm (RGD), LH/MavRrrc (RGD), LN/MavRrrc (RGD), LL/MavRrrc (RGD), SBH/Ygl (RGD), SHR/NHsd (RGD), SHRSP/Gcrc (RGD), SR/JrHsd (RGD), SS/Jr (RGD), SS/JrHsdMcwi (RGD), WAG/Rij (RGD), WKY/NCrl (RGD), WKY/Gcrc (RGD), WKY/NHsd (RGD)
15 86401986 86401987 G A snv SBN/Ygl (RGD), SBN/Ygl (MCW)
15 86405828 86405829 A G snv SBN/Ygl (RGD), SBN/Ygl (MCW)
15 86408900 86408901 C T snv LE/Stm (RGD)
15 86409262 86409263 C T snv LE/Stm (RGD)
15 86421540 86421541 A G snv ACI/N (MCW), SHRSP/Gcrc (RGD), SHR/NHsd (RGD), SBN/Ygl (RGD), SBH/Ygl (RGD), LE/Stm (RGD), GK/Ox (RGD), ACI/EurMcwi (RGD)
15 86421923 86421924 C T snv ACI/EurMcwi (RGD), SBH/Ygl (MCW), ACI/EurMcwi (MCW), SBH/Ygl (RGD)
15 86441428 86441429 G T snv SHR/NHsd (RGD), GK/Ox (RGD), SHRSP/Gcrc (RGD)
15 86442968 86442969 G A snv WKY/N (MCW), ACI/N (MCW), COP/CrCrl (MCW & UW), CDR, ACI/EurMcwi (MCW)
15 86443223 86443224 C T snv GH/OmrMcwi (MCW), SS/JrHsdMcwi (MCW), COP/CrCrl (MCW & UW), CDS, CDR
15 86443249 86443250 G T snv SS/JrHsdMcwi (MCW), COP/CrCrl (MCW & UW), GH/OmrMcwi (MCW), CDR, CDS


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1302984 AgrOrtholog
Ensembl Genes ENSRNOG00000060775 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000071726 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000074706 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000084471 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000090727 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/TrEMBL
  2.30.42.10 UniProtKB/TrEMBL
InterPro Calponin-like_dom_sf UniProtKB/TrEMBL
  CH-domain UniProtKB/TrEMBL
  DUF4757 UniProtKB/TrEMBL
  LMO-7 UniProtKB/TrEMBL
  PDZ/DHR/GLGF UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
  SM22_calponin UniProtKB/TrEMBL
  Znf_LIM UniProtKB/TrEMBL
KEGG Report rno:361084 UniProtKB/TrEMBL
NCBI Gene 361084 ENTREZGENE
PANTHER PTHR46767 UniProtKB/TrEMBL
Pfam DUF4757 UniProtKB/TrEMBL
  LIM UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PF00307 UniProtKB/TrEMBL
PhenoGen Lmo7 PhenoGen
PRINTS SM22CALPONIN UniProtKB/TrEMBL
PROSITE LIM_DOMAIN_1 UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PS50021 UniProtKB/TrEMBL
SMART LIM UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  SM00033 UniProtKB/TrEMBL
Superfamily-SCOP Calponin-homology UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
UniProt A0A0G2K174 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K8R3_RAT UniProtKB/TrEMBL
  Q6JBI7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-11-14 Lmo7  LIM domain 7  Lmo7  LIM domain only 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Lmo7  LIM domain only 7  LMO7  LIM domain only protein 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-02-14 LMO7  LIM domain only protein 7      Symbol and Name status set to provisional 70820 PROVISIONAL