LOC120097310 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120097310 (U6 spliceosomal RNA) Rattus norvegicus
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Symbol: LOC120097310
Name: U6 spliceosomal RNA
RGD ID: 41026458
Description:
Type: snrna
RefSeq Status: MODEL
Previously known as: U6
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81570,153,547 - 70,153,653 (-)NCBIGRCr8
mRatBN7.21563,745,031 - 63,745,137 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1563,745,031 - 63,745,137 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1571,071,925 - 71,072,031 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map15q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in LOC120097310
3 total Variants

1 to 10 of 24 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
61477Aia4Adjuvant induced arthritis QTL 43joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)155559608991365858Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)152788577486257085Rat
724545Niddm54Non-insulin dependent diabetes mellitus QTL 540.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)155079449473699215Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat

1 to 10 of 24 rows





RefSeq Transcripts XR_005494520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000085047
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1563,745,031 - 63,745,137 (-)Ensembl
RefSeq Acc Id: XR_005494520
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81570,153,547 - 70,153,653 (-)NCBI
mRatBN7.21563,745,031 - 63,745,137 (-)NCBI

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-12924 BioCyc
Ensembl Genes ENSRNOG00000059188 Ensembl
NCBI Gene LOC120097310 ENTREZGENE
PhenoGen LOC120097310 PhenoGen
RatGTEx ENSRNOG00000059188 RatGTEx
RNAcentral URS00006B9A75 RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120097310  U6 spliceosomal RNA  U6  U6 spliceosomal RNA  Data merged from RGD:15012377 737654 PROVISIONAL
2021-01-27 LOC120097310  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U6  U6 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL