D15Rat107 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

Marker: D15Rat107

Symbol: D15Rat107
Previously known as: oxsts9613; R0223-B05; 
RGD ID: 41308
Expected Size: 144 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr815106,469,009 - 106,469,153 (+)Marker Load Pipeline
mRatBN7.215100,062,374 - 100,062,518 (+)MAPPERmRatBN7.2
Rnor_6.015109,400,753 - 109,400,896NCBIRnor6.0
Rnor_5.015112,781,806 - 112,781,949UniSTSRnor5.0
Celera1598,832,843 - 98,832,986UniSTS
RH 3.4 Map15709.29RGD
RH 3.4 Map15709.29UniSTS
RH 2.0 Map15625.0RGD
SHRSP x BN Map1565.3998RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
QTLs:   Plaw1  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8


 
Forward Primer AAGGTGGAGAGAGACACCCA
Reverse Primer CGATTGTGTGCAAAGGCTTA
 
Template 
TCGACTCTCAGAGGATCCCCCTCACTGTGCTCTCGATTGTGTGCAAAGGCTTAGAACCAGATGC
ACTGTGTTCACCCTATCTTCTTATTACTTTAAATGAGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGAGCCAGAGGCAAGGTTGGGTGTCTCTCTCCACCTTAGTTTTTG
AAACATGATCTCATGCTCTCACTGAAGCCTGGTCTTTTGAGTATAGTGGTTGAGTAGAAAGTCC
CAGGGGTCTTGTGTCTCCTCCCTATTCCCCAGCCTCATCTTGATCCCACAGGTATCAAGTGACT
TAAGGACATCAGCCTCAGTCCTCTGGTCTGTGAGAGGACTCACAGTGGTAGCTAGGGTACGAGC
TCGAATTCGTAATCATGGTCATAGCTGTTTCTGTGTGAAATTGTTATCGCTCAAATTC
Strain, Expected Size(s)

ACI/N 154 AVN/Orl 158 BBDP/Rhw 154
BBDR/Rhw 156 BC/CpbU 158 BDIX/Han 154
BDVII/Cub 154 BN-Lx/Cub 146 BN/SsNHsd 146
BP/Cub 154 BUF/Pit 158 COP/OlaHsd 154
DA/PitN 154 F344/Pit 154 FHH/Eur 158
GH/Omr 154 GK/KyoSwe 150 IS/Kyo 152
LE/Mol 154 LEW/Pit 158 LH/Mav 158
LN/Mav 158 LOU/CHan 154 MHS/Gib 154
MNR/N 154 MNRA/N 154 MNS/Gib 154
MR/Pit 154 NEDH/K 154 NP9 152
ODU/N 154 OM/Ztm 156 P5C 156
PVG/Pit 158 SD/Rij 154 SHR/OlaHsd 152
SHRSP/Riv 154 SR/Jr 158 SS/Jr 160
WAG/RijKyo 154 WIST/Nhg 154 WKY/OlaHsd 154
WN/N 154 WTC/Kyo 154


GenBank Nucleotide CH473951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1567588667101769107Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1575788062101769107Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1568327165100062518Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1576306099101769107Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1575788062101769107Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1558156477101769107Rat



Database
Acc Id
Source(s)
NCBI Gene 100303124 UniSTS