Pcdh17 (protocadherin 17) - Rat Genome Database

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Gene: Pcdh17 (protocadherin 17) Rattus norvegicus
Analyze
Symbol: Pcdh17
Name: protocadherin 17
RGD ID: 1304753
Description: Predicted to enable calcium ion binding activity. Predicted to be involved in synaptic membrane adhesion. Predicted to act upstream of or within several processes, including negative regulation of synaptic transmission; presynaptic active zone assembly; and regulation of synaptic vesicle clustering. Predicted to be active in GABA-ergic synapse; glutamatergic synapse; and synaptic membrane. Orthologous to human PCDH17 (protocadherin 17); INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC306055; protocadherin-17
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81566,631,549 - 66,725,007 (+)NCBIGRCr8
mRatBN7.21560,222,088 - 60,316,172 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1560,222,004 - 60,313,999 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1564,338,162 - 64,427,126 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01565,451,249 - 65,540,381 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01562,315,212 - 62,404,183 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01567,555,835 - 67,647,990 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1567,555,835 - 67,645,088 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01571,182,073 - 71,273,939 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41566,391,901 - 66,482,530 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11566,405,272 - 66,600,882 (+)NCBI
Celera1559,754,674 - 59,843,809 (+)NCBICelera
Cytogenetic Map15q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP)
17beta-estradiol 3-benzoate  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
6-propyl-2-thiouracil  (EXP)
acetylsalicylic acid  (ISO)
acrylamide  (EXP)
aflatoxin B1  (EXP,ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
astemizole  (EXP)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
C60 fullerene  (EXP)
cadmium dichloride  (EXP)
carbon nanotube  (ISO)
chloroprene  (EXP)
chrysene  (ISO)
clobetasol  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
D-glucose  (ISO)
decabromodiphenyl ether  (EXP)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
fucoxanthin  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
gentamycin  (EXP)
glucose  (ISO)
lipopolysaccharide  (ISO)
medroxyprogesterone acetate  (ISO)
mercury dibromide  (ISO)
methimazole  (EXP)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
miconazole  (ISO)
N-methyl-4-phenylpyridinium  (EXP,ISO)
N-nitrosodiethylamine  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
propiconazole  (EXP)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
sulfadimethoxine  (EXP)
sulindac  (ISO)
temozolomide  (ISO)
testosterone  (EXP)
testosterone enanthate  (ISO)
tetraphene  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triptonide  (ISO)
valproic acid  (EXP,ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:23684785  


Genomics

Comparative Map Data
Pcdh17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81566,631,549 - 66,725,007 (+)NCBIGRCr8
mRatBN7.21560,222,088 - 60,316,172 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1560,222,004 - 60,313,999 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1564,338,162 - 64,427,126 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01565,451,249 - 65,540,381 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01562,315,212 - 62,404,183 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01567,555,835 - 67,647,990 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1567,555,835 - 67,645,088 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01571,182,073 - 71,273,939 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41566,391,901 - 66,482,530 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11566,405,272 - 66,600,882 (+)NCBI
Celera1559,754,674 - 59,843,809 (+)NCBICelera
Cytogenetic Map15q12NCBI
PCDH17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381357,630,108 - 57,729,311 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1357,631,744 - 57,729,311 (+)EnsemblGRCh38hg38GRCh38
GRCh371358,205,878 - 58,303,445 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361357,103,790 - 57,201,066 (+)NCBINCBI36Build 36hg18NCBI36
Build 341357,103,944 - 57,198,155NCBI
Celera1339,160,322 - 39,257,584 (+)NCBICelera
Cytogenetic Map13q21.1NCBI
HuRef1338,887,937 - 38,985,207 (+)NCBIHuRef
CHM1_11358,173,338 - 58,270,626 (+)NCBICHM1_1
T2T-CHM13v2.01356,846,361 - 56,945,624 (+)NCBIT2T-CHM13v2.0
Pcdh17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391484,680,626 - 84,775,005 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1484,681,003 - 84,776,442 (+)EnsemblGRCm39 Ensembl
GRCm381484,443,563 - 84,537,565 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1484,443,563 - 84,539,002 (+)EnsemblGRCm38mm10GRCm38
MGSCv371484,843,370 - 84,936,867 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361483,253,698 - 83,342,225 (+)NCBIMGSCv36mm8
Celera1481,944,000 - 82,037,467 (+)NCBICelera
Cytogenetic Map14D3NCBI
cM Map1443.54NCBI
Pcdh17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540446,791,148 - 46,886,918 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540446,795,303 - 46,886,918 (-)NCBIChiLan1.0ChiLan1.0
PCDH17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21459,109,655 - 59,208,933 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11357,739,260 - 57,838,536 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01338,801,514 - 38,900,811 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11357,532,850 - 57,631,725 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1357,532,850 - 57,631,725 (+)Ensemblpanpan1.1panPan2
PCDH17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12213,865,138 - 13,962,110 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2213,865,900 - 13,958,405 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2213,835,266 - 13,930,999 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02214,087,985 - 14,184,578 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2214,088,068 - 14,180,869 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12213,793,476 - 13,885,812 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02213,818,958 - 13,910,969 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02213,837,878 - 13,933,995 (+)NCBIUU_Cfam_GSD_1.0
Pcdh17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945147,355,309 - 147,452,093 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936820765,100 - 861,667 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936820764,016 - 860,325 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCDH17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1130,511,275 - 30,611,727 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11130,510,779 - 30,611,732 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21131,998,284 - 32,036,732 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PCDH17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1335,423,998 - 35,518,776 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl335,426,230 - 35,519,023 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660578,229,314 - 8,327,911 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pcdh17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474818,958,276 - 19,054,381 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474818,958,250 - 19,056,278 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pcdh17
436 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:368
Count of miRNA genes:203
Interacting mature miRNAs:248
Transcripts:ENSRNOT00000045882
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
61477Aia4Adjuvant induced arthritis QTL 43joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)155559608991365858Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)152788577486257085Rat
724545Niddm54Non-insulin dependent diabetes mellitus QTL 540.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)155079449473699215Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1558156477101769107Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
2293686Bmd36Bone mineral density QTL 367.40.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)153361105871477291Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)153405413979054139Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
631516Gluco31Glucose level QTL 317blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)155559608995018120Rat
2293691Bmd37Bone mineral density QTL 376.60.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)153361105871477291Rat
2317050Aia24Adjuvant induced arthritis QTL 242.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)155284790873690657Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat

Markers in Region
RH136647  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21560,313,445 - 60,313,630 (+)MAPPERmRatBN7.2
Rnor_6.01567,645,265 - 67,645,448NCBIRnor6.0
Rnor_5.01571,271,214 - 71,271,397UniSTSRnor5.0
RGSC_v3.41566,482,707 - 66,482,890UniSTSRGSC3.4
Celera1559,843,986 - 59,844,169UniSTS
RH 3.4 Map15399.1UniSTS
Cytogenetic Map15q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 10 49 113 91 90 59 25 59 6 217 96 93 45 58 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000045882   ⟹   ENSRNOP00000046413
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1560,224,304 - 60,313,269 (+)Ensembl
Rnor_6.0 Ensembl1567,555,835 - 67,645,088 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000101299   ⟹   ENSRNOP00000080332
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1560,222,004 - 60,313,999 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000103578   ⟹   ENSRNOP00000084215
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1560,222,004 - 60,313,999 (+)Ensembl
RefSeq Acc Id: NM_001107279   ⟹   NP_001100749
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81566,633,142 - 66,722,105 (+)NCBI
mRatBN7.21560,224,304 - 60,313,269 (+)NCBI
Rnor_6.01567,555,835 - 67,645,088 (+)NCBI
Rnor_5.01571,182,073 - 71,273,939 (+)NCBI
RGSC_v3.41566,391,901 - 66,482,530 (+)RGD
Celera1559,754,674 - 59,843,809 (+)RGD
Sequence:
RefSeq Acc Id: XM_006252377   ⟹   XP_006252439
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81566,633,408 - 66,725,007 (+)NCBI
mRatBN7.21560,222,089 - 60,316,172 (+)NCBI
Rnor_6.01567,556,081 - 67,647,990 (+)NCBI
Rnor_5.01571,182,073 - 71,273,939 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252378   ⟹   XP_006252440
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81566,633,408 - 66,725,007 (+)NCBI
mRatBN7.21560,222,088 - 60,316,172 (+)NCBI
Rnor_6.01567,556,081 - 67,647,990 (+)NCBI
Rnor_5.01571,182,073 - 71,273,939 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252379   ⟹   XP_006252441
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81566,633,408 - 66,725,007 (+)NCBI
mRatBN7.21560,222,090 - 60,316,172 (+)NCBI
Rnor_6.01567,556,039 - 67,647,990 (+)NCBI
Rnor_5.01571,182,073 - 71,273,939 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252381   ⟹   XP_006252443
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81566,633,408 - 66,725,007 (+)NCBI
mRatBN7.21560,222,088 - 60,316,172 (+)NCBI
Rnor_6.01567,556,081 - 67,647,990 (+)NCBI
Rnor_5.01571,182,073 - 71,273,939 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039093360   ⟹   XP_038949288
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81566,633,408 - 66,725,007 (+)NCBI
mRatBN7.21560,222,088 - 60,316,172 (+)NCBI
RefSeq Acc Id: XM_063274309   ⟹   XP_063130379
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81566,633,408 - 66,725,007 (+)NCBI
RefSeq Acc Id: XM_063274310   ⟹   XP_063130380
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81566,633,408 - 66,725,007 (+)NCBI
RefSeq Acc Id: XM_063274311   ⟹   XP_063130381
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81566,633,408 - 66,725,007 (+)NCBI
RefSeq Acc Id: XM_063274312   ⟹   XP_063130382
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81566,633,408 - 66,725,007 (+)NCBI
RefSeq Acc Id: XM_063274313   ⟹   XP_063130383
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81566,631,549 - 66,725,007 (+)NCBI
RefSeq Acc Id: XM_063274314   ⟹   XP_063130384
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81566,633,408 - 66,665,731 (+)NCBI
RefSeq Acc Id: NP_001100749   ⟸   NM_001107279
- Peptide Label: precursor
- Sequence:
RefSeq Acc Id: XP_006252441   ⟸   XM_006252379
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006252439   ⟸   XM_006252377
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006252440   ⟸   XM_006252378
- Peptide Label: isoform X2
- UniProtKB: A6HU20 (UniProtKB/TrEMBL),   D3ZPN0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252443   ⟸   XM_006252381
- Peptide Label: isoform X7
- Sequence:
Ensembl Acc Id: ENSRNOP00000046413   ⟸   ENSRNOT00000045882
RefSeq Acc Id: XP_038949288   ⟸   XM_039093360
- Peptide Label: isoform X9
- UniProtKB: A6HU20 (UniProtKB/TrEMBL),   D3ZPN0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000080332   ⟸   ENSRNOT00000101299
Ensembl Acc Id: ENSRNOP00000084215   ⟸   ENSRNOT00000103578
RefSeq Acc Id: XP_063130383   ⟸   XM_063274313
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063130379   ⟸   XM_063274309
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063130380   ⟸   XM_063274310
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063130381   ⟸   XM_063274311
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063130382   ⟸   XM_063274312
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063130384   ⟸   XM_063274314
- Peptide Label: isoform X11
Protein Domains
Cadherin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZPN0-F1-model_v2 AlphaFold D3ZPN0 1-1208 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304753 AgrOrtholog
BioCyc Gene G2FUF-12946 BioCyc
Ensembl Genes ENSRNOG00000008970 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000045882.5 UniProtKB/TrEMBL
  ENSRNOT00000101299.1 UniProtKB/TrEMBL
  ENSRNOT00000103578.1 UniProtKB/TrEMBL
Gene3D-CATH Cadherins UniProtKB/TrEMBL
InterPro Cadherin UniProtKB/TrEMBL
  Cadherin-like UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/TrEMBL
  Cadherin_N UniProtKB/TrEMBL
  Protocadherin/Cadherin-CA UniProtKB/TrEMBL
KEGG Report rno:306055 UniProtKB/TrEMBL
NCBI Gene 306055 ENTREZGENE
PANTHER CADHERIN-87A UniProtKB/TrEMBL
  PTHR24028:SF41 UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/TrEMBL
  Cadherin_2 UniProtKB/TrEMBL
PhenoGen Pcdh17 PhenoGen
PRINTS CADHERIN UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008970 RatGTEx
SMART SM00112 UniProtKB/TrEMBL
Superfamily-SCOP Cadherin UniProtKB/TrEMBL
UniProt A0A8I5ZPT5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZZ04 ENTREZGENE, UniProtKB/TrEMBL
  A6HU20 ENTREZGENE, UniProtKB/TrEMBL
  D3ZPN0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Pcdh17  protocadherin 17   Pcdh17_predicted  protocadherin 17 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Pcdh17_predicted  protocadherin 17 (predicted)      Symbol and Name status set to approved 70820 APPROVED