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Gene: Itgbl1 (integrin subunit beta like 1) Rattus norvegicus

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Symbol:

Itgbl1

Name:

integrin subunit beta like 1

RGD ID:

1560635

Description:

Predicted to enable integrin binding activity. Predicted to be involved in several processes, including cell adhesion mediated by integrin; cell-matrix adhesion; and integrin-mediated signaling pathway. Predicted to be located in extracellular region. Predicted to be part of integrin complex. Predicted to be active in cell surface and focal adhesion. Orthologous to human ITGBL1 (integrin subunit beta like 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; aflatoxin B1.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

integrin beta-like protein 1; integrin, beta-like 1; LOC498564; similar to integrin, beta-like 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ITGBL1 (integrin subunit beta like 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Itgbl1 (integrin, beta-like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Itgbl1 (integrin subunit beta like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ITGBL1 (integrin subunit beta like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ITGBL1 (integrin subunit beta like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Itgbl1 (integrin subunit beta like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ITGBL1 (integrin subunit beta like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ITGBL1 (integrin subunit beta like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Itgbl1 (integrin subunit beta like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	EFEMP1 (EGF containing fibulin extracellular matrix protein 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	ITGBL1 (integrin subunit beta like 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Itgbl1 (integrin, beta-like 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	itgbl1 (integrin, beta-like 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	itgbl1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	107,186,792 - 107,448,335 (+)	NCBI		GRCr8
mRatBN7.2	15	100,780,184 - 101,041,734 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	100,780,184 - 101,041,733 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	104,725,109 - 104,995,329 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	105,820,283 - 106,084,368 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	102,747,527 - 103,011,619 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	110,114,148 - 110,378,970 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	110,114,148 - 110,378,969 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	113,495,871 - 113,759,208 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	108,785,509 - 109,051,028 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	15	99,524,299 - 99,783,600 (+)	NCBI		Celera
Cytogenetic Map	15	q25	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Anal Atresia, Hypospadias, and Penoscrotal Inversion (ISO)

holoprosencephaly 5 (ISO)

propionic acidemia (ISO)

spinocerebellar ataxia type 27 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

3-chloropropane-1,2-diol (EXP)

3-methylcholanthrene (ISO)

aflatoxin B1 (EXP,ISO)

Aflatoxin B2 alpha (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium dichloride (EXP,ISO)

calcitriol (ISO)

carbon nanotube (ISO)

choline (ISO)

copper atom (ISO)

copper(0) (ISO)

Cuprizon (EXP)

deoxynivalenol (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

dioxygen (EXP)

diuron (EXP)

doxorubicin (ISO)

endosulfan (EXP)

folic acid (ISO)

fulvestrant (ISO)

furan (EXP)

genistein (ISO)

ibuprofen (ISO)

inulin (ISO)

isoprenaline (ISO)

L-methionine (ISO)

lead diacetate (EXP)

methotrexate (ISO)

methoxychlor (EXP)

mifepristone (EXP)

nickel atom (ISO)

ozone (EXP)

PD 0325901 (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

potassium chromate (ISO)

progesterone (ISO)

propanal (ISO)

resveratrol (ISO)

rifampicin (ISO)

rofecoxib (ISO)

rotenone (EXP)

silicon dioxide (ISO)

simvastatin (ISO)

Soman (EXP)

T-2 toxin (ISO)

triadimefon (ISO)

trichloroethene (EXP)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell adhesion mediated by integrin (IBA)

cell migration (IBA)

cell-cell adhesion (IBA)

cell-matrix adhesion (IBA)

integrin-mediated signaling pathway (IBA)

Cellular Component

cell surface (IBA)

extracellular region (IEA)

focal adhesion (IBA)

integrin complex (IBA)

Molecular Function

integrin binding (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:24006456	PMID:37395147

Genomics

Comparative Map Data

Itgbl1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	107,186,792 - 107,448,335 (+)	NCBI		GRCr8
mRatBN7.2	15	100,780,184 - 101,041,734 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	100,780,184 - 101,041,733 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	104,725,109 - 104,995,329 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	105,820,283 - 106,084,368 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	102,747,527 - 103,011,619 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	110,114,148 - 110,378,970 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	110,114,148 - 110,378,969 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	113,495,871 - 113,759,208 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	108,785,509 - 109,051,028 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	15	99,524,299 - 99,783,600 (+)	NCBI		Celera
Cytogenetic Map	15	q25	NCBI

ITGBL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	101,452,675 - 101,720,856 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	101,452,593 - 101,720,856 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	13	102,105,026 - 102,373,206 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	100,902,967 - 101,166,795 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	13	100,902,966 - 101,166,794	NCBI
Celera	13	82,947,678 - 83,211,592 (+)	NCBI		Celera
Cytogenetic Map	13	q33.1	NCBI
HuRef	13	82,698,206 - 82,966,639 (+)	NCBI		HuRef
CHM1_1	13	102,074,993 - 102,343,275 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	13	100,667,841 - 100,936,857 (+)	NCBI		T2T-CHM13v2.0

Itgbl1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	123,897,331 - 124,215,173 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	123,897,383 - 124,213,030 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	123,659,937 - 123,978,865 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	123,659,971 - 123,975,618 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	124,059,362 - 124,373,301 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	122,795,353 - 123,109,258 (+)	NCBI		MGSCv36	mm8
Celera	14	123,117,270 - 123,428,005 (+)	NCBI		Celera
Cytogenetic Map	14	E5	NCBI
cM Map	14	66.1	NCBI

Itgbl1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955404	9,332,169 - 9,546,245 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955404	9,331,407 - 9,545,711 (-)	NCBI	ChiLan1.0	ChiLan1.0

ITGBL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	102,939,483 - 103,234,000 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	101,606,927 - 101,899,428 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	82,609,493 - 82,877,474 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	101,746,410 - 102,010,227 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	101,747,760 - 102,014,605 (+)	Ensembl	panpan1.1		panPan2

ITGBL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	22	51,157,789 - 51,377,441 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	22	51,158,169 - 51,380,430 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	22	50,937,978 - 51,157,393 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	22	51,602,342 - 51,827,243 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	22	51,602,571 - 51,827,217 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	22	51,265,906 - 51,478,891 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	22	51,275,078 - 51,487,305 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	22	51,322,401 - 51,535,328 (+)	NCBI		UU_Cfam_GSD_1.0

Itgbl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	186,499,221 - 186,718,026 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936472	9,233,576 - 9,452,954 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936472	9,227,795 - 9,452,936 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ITGBL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	70,042,232 - 70,246,968 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	11	70,042,051 - 70,246,974 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	77,341,847 - 77,451,340 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ITGBL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	80,045,404 - 80,303,978 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	80,045,577 - 80,302,006 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666046	36,557,095 - 36,814,496 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Itgbl1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624793	9,645,861 - 9,878,634 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624793	9,645,076 - 9,878,788 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Itgbl1
1433 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	273
Count of miRNA genes:	180
Interacting mature miRNAs:	210
Transcripts:	ENSRNOT00000006264
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
731177	Uae26	Urinary albumin excretion QTL 26	2.4	0.025	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	15	67588667	101769107	Rat
1549844	Bss7	Bone structure and strength QTL 7	6.4		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	15	75788062	101769107	Rat
70155	Gcs1	Gastric cancer susceptibility QTL1	3.8		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	15	76306099	101769107	Rat
2317055	Aia10	Adjuvant induced arthritis QTL 10	3.41		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	15	75788062	101769107	Rat
631655	Bp126	Blood pressure QTL 126	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	15	58156477	101769107	Rat

Markers in Region

RH130155

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	101,041,481 - 101,041,665 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	110,378,718 - 110,378,901	NCBI	Rnor6.0
Rnor_5.0	15	113,758,956 - 113,759,139	UniSTS	Rnor5.0
RGSC_v3.4	15	109,050,776 - 109,050,959	UniSTS	RGSC3.4
Celera	15	99,783,348 - 99,783,531	UniSTS
RH 3.4 Map	15	743.5	UniSTS
Cytogenetic Map	15	q25	UniSTS

AW528074

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	101,036,347 - 101,036,475 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	110,373,584 - 110,373,711	NCBI	Rnor6.0
Rnor_5.0	15	113,753,822 - 113,753,949	UniSTS	Rnor5.0
RGSC_v3.4	15	109,045,642 - 109,045,769	UniSTS	RGSC3.4
Celera	15	99,778,214 - 99,778,341	UniSTS
RH 3.4 Map	15	692.39	UniSTS
Cytogenetic Map	15	q25	UniSTS

AU048864

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	100,840,143 - 100,840,245 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	110,174,576 - 110,174,677	NCBI	Rnor6.0
Rnor_5.0	15	113,556,299 - 113,556,400	UniSTS	Rnor5.0
RGSC_v3.4	15	108,845,866 - 108,845,967	UniSTS	RGSC3.4
Celera	15	99,584,043 - 99,584,144	UniSTS
Cytogenetic Map	15	q25	UniSTS

G46240

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	100,824,198 - 100,824,383 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	110,158,157 - 110,158,341	NCBI	Rnor6.0
Rnor_5.0	15	113,539,880 - 113,540,064	UniSTS	Rnor5.0
RGSC_v3.4	15	108,829,518 - 108,829,702	UniSTS	RGSC3.4
Celera	15	99,568,311 - 99,568,495	UniSTS
Cytogenetic Map	15	q25	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	87	86	55	25	55	6	214	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001017505	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC109837	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC087076	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000006264 ⟹ ENSRNOP00000006264

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	100,780,184 - 101,041,733 (+)	Ensembl
Rnor_6.0 Ensembl	15	110,114,148 - 110,378,969 (+)	Ensembl

RefSeq Acc Id:

NM_001017505 ⟹ NP_001017505

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	107,186,792 - 107,448,335 (+)	NCBI
mRatBN7.2	15	100,780,184 - 101,041,734 (+)	NCBI
Rnor_6.0	15	110,114,148 - 110,378,970 (+)	NCBI
Rnor_5.0	15	113,495,871 - 113,759,208 (+)	NCBI
RGSC_v3.4	15	108,785,509 - 109,051,028 (+)	RGD
Celera	15	99,524,299 - 99,783,600 (+)	RGD

Sequence:

show sequence

TGCTGGTGACACTTCTTCCTCCTGCTGCCTCGGGTGGAAGCCCCAGCTAGCAGCAGTGCAGCTG
GTCTGCCCTCCCGCCTGTACAGCTCAGCATGCATCCCCCAGGCTTTAAGAACTTCTTGTTGCTG
GTGTCCTCCCTTTTCTTCATTGGGCTGTCAGCTGCACCTCAAAGCTTCTCACCATCTCTGAGAA
GCCTGTCGGGCGCCCCCTGCAGGCTGTCCCGGGCAGAGTCCGAGCGCAGATGTCGTGCACCTGG
GCAGCCCCCAGGGAGCGCTCTGTGCCATGACCGTGGCCGGTGCGAGTGTGGGGTGTGCATCTGT
CACGTGACTGAACCTGGCACCTACTTTGGGCCACTGTGTGAGTGCCATGACTGGGTCTGCGAGA
CCTACGACGGGAAAACCTGTGCAGGCCACGGTACTTGTGACTGCGGCAAGTGTAAGTGTGATGT
GGGATGGTCTGGGGAAGCTTGCCAGTACCCGACCAAGTGCGACCTGACCAAAAAAATAAGCAAC
CAGATGTGCAAGAACTCTCAAGATGTCATCTGCTCCAACGCAGGTACATGTCACTGTGGCAGGT
GTAAGTGTGATAATTCAGATGGACATGGACTCATTTACGGTAAATTTTGTGAGTGTGATGATAG
AGAATGCATAGATGATGAAACAGAAGAAATATGTGGAGGCCATGGGAAGTGTTACTGTGGAAAC
TGTTACTGCGAGGCTGGTTGGCATGGAGATAAATGCGAGTTCCAGTGTGACATCACCCCCTGGG
AAAGCAAGCGAAGATGCACATCTCCAGATGGCAAAGTCTGTAGCAACAGAGGAACATGTGTATG
TGGTGAATGTTCTTGCCATGATGTTGATCCAACTGGCGACTGGGGAGACATTCATGGAGACACA
TGCGAGTGTGATGAAAGGGACTGCAGAGCTGTTTATGATCGATACTCTGATGATTTCTGTTCAG
GTCACGGGCAGTGTAACTGTGGAAGATGTGACTGCAGAGCAGGCTGGTATGGGAAGAAGTGTGA
GCACCCAAAGAACTGCCCATTGTCAGCTGAGGAGAGCACCAGAAAGTGCCAGGGTAGCTCTGAT
CTGCCTTGTTCTGGAAGGGGCAGATGCGAATGTGGCAGATGTACCTGTTACCCTCCCGGGGACA
GCAGAGTATATGGCAAGACCTGTGAGTGTGATGACCGGCGCTGTGAAGACCTAGACGGTGTGGT
CTGTGGAGGCCGTGGCACGTGCTCCTGTGGTCGTTGTGTTTGTGAGAAAGGATGGTTTGGTAAG
CTCTGCCAACACCCTCGGAAGTGTAATATGACCGAAGAACAAAGCAGGAGTCTGTGTGAGTCAG
CAGATGGCACATTGTGCTCGGGGAAGGGTTCTTGTCATTGTGGAAAGTGCATTTGTTCTGGAGA
AGAGTGGTATATTTCAGGGGAGTTTTGTGACTGTGATGACAGAGACTGTGACAAACACGACGGT
CTCATTTGCACAGGGAATGGAATCTGTAGCTGTGGAAACTGTGAATGCTGGGATGGATGGAATG
GAAATGCATGTGAAATCTGGCTTGGTACCGAATATCCTTAATGATGCCAAGGGAGACAACTGGA
TTCTTATTTCTAGGCCATTTTAGAAATTCAGAGGAAAGCATGTTACACAGCACTAGGACAGACT
TTTGTGTATTTTTCTATTTCTGACTGCCCAAGTGAAGCATGGGTCTTCATTAGAAATGAATTTA
GCAAACTGATGTAAGTTACACCATAAAGAATTGTTCTCCCATGACTAATATCAGTGTTTCACAA
CTGAAGAGGACAATTTTGTAACGCACAAGACAATTGGTGGTGTCTACAGAGAATTTGGTTGTCA
GACTTGGTAGGTAGGAGTATTTGTGTTATGGGAATATTAGAGGTAGTGACCACAGACAATGCTG
AACACCCTACAGAACATAGAAAGGCCCTTACAACAAAGTATTTTCTGACATCCAATGTTTAACA
AGATGTAGTAGAAAAATGCTAAGTCTCATGGTATTTTGTACTCCACATCCCAAAACCAGAAACA
CTGTATCAGAATATAAGGATAATATTTATTCTCACATAAACCAACCAGTCAGATTTTTCCAGGA
TTCCATATGACTCTGAAATTGTATATGGAATGATAATGACAGACACATATGAGGTGTAATGATG
TAGGCTGGGGGCTTACCAGATCACAAGGGCTTTAAACTCACAAGAATCTCTTACAGGAAGAAAT
GAAAAATGCACAATTTGACATTTTAATAAATAATGACATAAGTTGTTTAAAAAAAAAAAAAAAA
AAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001017505	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH87076	(Get FASTA)	NCBI Sequence Viewer
	EDM02594	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000006264.3
GenBank Protein	Q5PQQ8	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001017505 ⟸ NM_001017505
- Peptide Label:	precursor
- UniProtKB:	Q5PQQ8 (UniProtKB/Swiss-Prot), A6HUN1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MHPPGFKNFLLLVSSLFFIGLSAAPQSFSPSLRSLSGAPCRLSRAESERRCRAPGQPPGSALCH DRGRCECGVCICHVTEPGTYFGPLCECHDWVCETYDGKTCAGHGTCDCGKCKCDVGWSGEACQY PTKCDLTKKISNQMCKNSQDVICSNAGTCHCGRCKCDNSDGHGLIYGKFCECDDRECIDDETEE ICGGHGKCYCGNCYCEAGWHGDKCEFQCDITPWESKRRCTSPDGKVCSNRGTCVCGECSCHDVD PTGDWGDIHGDTCECDERDCRAVYDRYSDDFCSGHGQCNCGRCDCRAGWYGKKCEHPKNCPLSA EESTRKCQGSSDLPCSGRGRCECGRCTCYPPGDSRVYGKTCECDDRRCEDLDGVVCGGRGTCSC GRCVCEKGWFGKLCQHPRKCNMTEEQSRSLCESADGTLCSGKGSCHCGKCICSGEEWYISGEFC DCDDRDCDKHDGLICTGNGICSCGNCECWDGWNGNACEIWLGTEYP hide sequence

Ensembl Acc Id:

ENSRNOP00000006264 ⟸ ENSRNOT00000006264

Protein Domains

EGF-like I-EGF

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5PQQ8-F1-model_v2	AlphaFold	Q5PQQ8	1-494	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699887

Promoter ID:

EPDNEW_R10411

Type:

initiation region

Name:

Itgbl1_1

Description:

integrin subunit beta like 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	15	110,114,048 - 110,114,108	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1560635	AgrOrtholog
BioCyc Gene	G2FUF-12331	BioCyc
Ensembl Genes	ENSRNOG00000004516	Ensembl, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000006264.5	UniProtKB/Swiss-Prot
Gene3D-CATH	Laminin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7134947	IMAGE-MGC_LOAD
InterPro	EGF-like_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EGF_extracell	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Integrin_bsu	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:498564	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:94470	IMAGE-MGC_LOAD
NCBI Gene	498564	ENTREZGENE
PANTHER	INTEGRIN BETA SUBUNIT	UniProtKB/TrEMBL
	INTEGRIN BETA-PS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR10082	UniProtKB/Swiss-Prot
Pfam	EGF_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Itgbl1	PhenoGen
PROSITE	EGF_1	UniProtKB/Swiss-Prot
	EGF_2	UniProtKB/Swiss-Prot
	I_EGF_2	UniProtKB/Swiss-Prot
	INTEGRIN_BETA	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000004516	RatGTEx
	ENSRNOG00060003694	RatGTEx
SMART	EGF	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	EGF/Laminin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A6HUN1	ENTREZGENE, UniProtKB/TrEMBL
	ITGBL_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-12-23	Itgbl1	integrin subunit beta like 1	Itgbl1	integrin, beta-like 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-05	Itgbl1	integrin, beta-like 1	LOC498564	similar to integrin, beta-like 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC498564	similar to integrin, beta-like 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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