Itgbl1 (integrin subunit beta like 1) - Rat Genome Database

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Gene: Itgbl1 (integrin subunit beta like 1) Ictidomys tridecemlineatus
Analyze
Symbol: Itgbl1
Name: integrin subunit beta like 1
RGD ID: 12586988
Description: ENCODES a protein that exhibits integrin binding (inferred); INVOLVED IN cell adhesion mediated by integrin (inferred); cell migration (inferred); cell-matrix adhesion (inferred); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); genetic disease (ortholog); holoprosencephaly 5 (ortholog); FOUND IN cell surface (inferred); focal adhesion (inferred); integrin complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: integrin beta-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945186,499,221 - 186,718,026 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364729,233,576 - 9,452,954 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364729,227,795 - 9,452,936 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Itgbl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945186,499,221 - 186,718,026 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364729,233,576 - 9,452,954 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364729,227,795 - 9,452,936 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ITGBL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813101,452,675 - 101,720,856 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl13101,452,593 - 101,720,856 (+)EnsemblGRCh38hg38GRCh38
GRCh3713102,105,026 - 102,373,206 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3613100,902,967 - 101,166,795 (+)NCBINCBI36Build 36hg18NCBI36
Build 3413100,902,966 - 101,166,794NCBI
Celera1382,947,678 - 83,211,592 (+)NCBICelera
Cytogenetic Map13q33.1NCBI
HuRef1382,698,206 - 82,966,639 (+)NCBIHuRef
CHM1_113102,074,993 - 102,343,275 (+)NCBICHM1_1
T2T-CHM13v2.013100,667,841 - 100,936,857 (+)NCBIT2T-CHM13v2.0
Itgbl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914123,897,331 - 124,215,173 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14123,897,383 - 124,213,030 (+)EnsemblGRCm39 Ensembl
GRCm3814123,659,937 - 123,978,865 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14123,659,971 - 123,975,618 (+)EnsemblGRCm38mm10GRCm38
MGSCv3714124,059,362 - 124,373,301 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3614122,795,353 - 123,109,258 (+)NCBIMGSCv36mm8
Celera14123,117,270 - 123,428,005 (+)NCBICelera
Cytogenetic Map14E5NCBI
cM Map1466.1NCBI
Itgbl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr815107,186,792 - 107,448,335 (+)NCBIGRCr8
mRatBN7.215100,780,184 - 101,041,734 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl15100,780,184 - 101,041,733 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx15104,725,109 - 104,995,329 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.015105,820,283 - 106,084,368 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.015102,747,527 - 103,011,619 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.015110,114,148 - 110,378,970 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15110,114,148 - 110,378,969 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015113,495,871 - 113,759,208 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415108,785,509 - 109,051,028 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1599,524,299 - 99,783,600 (+)NCBICelera
Cytogenetic Map15q25NCBI
Itgbl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554049,332,169 - 9,546,245 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554049,331,407 - 9,545,711 (-)NCBIChiLan1.0ChiLan1.0
ITGBL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v214102,939,483 - 103,234,000 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan113101,606,927 - 101,899,428 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01382,609,493 - 82,877,474 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113101,746,410 - 102,010,227 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13101,747,760 - 102,014,605 (+)Ensemblpanpan1.1panPan2
ITGBL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12251,157,789 - 51,377,441 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2251,158,169 - 51,380,430 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2250,937,978 - 51,157,393 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02251,602,342 - 51,827,243 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2251,602,571 - 51,827,217 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12251,265,906 - 51,478,891 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02251,275,078 - 51,487,305 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02251,322,401 - 51,535,328 (+)NCBIUU_Cfam_GSD_1.0
ITGBL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1170,042,232 - 70,246,968 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11170,042,051 - 70,246,974 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21177,341,847 - 77,451,340 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ITGBL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1380,045,404 - 80,303,978 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl380,045,577 - 80,302,006 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604636,557,095 - 36,814,496 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Itgbl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247939,645,861 - 9,878,634 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247939,645,076 - 9,878,788 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005317010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000003067   ⟹   ENSSTOP00000002739
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364729,233,576 - 9,452,954 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000040776   ⟹   ENSSTOP00000026361
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364729,234,896 - 9,451,606 (-)Ensembl
RefSeq Acc Id: XM_005317010   ⟹   XP_005317067
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945186,499,221 - 186,718,026 (+)NCBI
SpeTri2.0NW_0049364729,227,795 - 9,452,936 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005317067 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000002739.3
  ENSSTOP00000026361.1
GenBank Protein KAG3293352 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005317067   ⟸   XM_005317010
- UniProtKB: I3M1M1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000002739   ⟸   ENSSTOT00000003067
RefSeq Acc Id: ENSSTOP00000026361   ⟸   ENSSTOT00000040776
Protein Domains
EGF-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000003067 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000003067.3 UniProtKB/TrEMBL
  ENSSTOT00000040776.1 UniProtKB/TrEMBL
Gene3D-CATH Laminin UniProtKB/TrEMBL
InterPro EGF-like_dom UniProtKB/TrEMBL
  EGF_extracell UniProtKB/TrEMBL
  Integrin_bsu UniProtKB/TrEMBL
NCBI Gene Itgbl1 ENTREZGENE
PANTHER INTEGRIN BETA-PS UniProtKB/TrEMBL
  PTHR10082 UniProtKB/TrEMBL
  PTHR10082:SF3 UniProtKB/TrEMBL
Pfam EGF_2 UniProtKB/TrEMBL
PROSITE INTEGRIN_BETA UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
UniProt A0A287CYL5_ICTTR UniProtKB/TrEMBL
  I3M1M1 ENTREZGENE, UniProtKB/TrEMBL