Ggact (gamma-glutamylamine cyclotransferase) - Rat Genome Database
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Gene: Ggact (gamma-glutamylamine cyclotransferase) Rattus norvegicus
Analyze
Symbol: Ggact
Name: gamma-glutamylamine cyclotransferase
RGD ID: 1304748
Description: Predicted to have gamma-glutamylaminecyclotransferase activity. Predicted to be involved in cellular modified amino acid catabolic process. Predicted to localize to cytosol. Orthologous to human GGACT (gamma-glutamylamine cyclotransferase); INTERACTS WITH 1,2-dimethylhydrazine; 6-propyl-2-thiouracil; amphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: A2ld1; AIG2-like domain 1; AIG2-like domain-containing protein 1; gamma-glutamylaminecyclotransferase; LOC290500; MGC112665; RGD1304748; similar to cDNA sequence BC006662
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21599,969,246 - 99,998,343 (-)NCBI
Rnor_6.0 Ensembl15109,307,904 - 109,316,953 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.015109,307,683 - 109,336,779 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.015112,688,790 - 112,716,622 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415108,029,945 - 108,053,498 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.115108,045,724 - 108,069,278 (-)NCBI
Celera1598,739,747 - 98,763,312 (-)NCBICelera
Cytogenetic Map15q25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IBA)

Molecular Function

References

Additional References at PubMed
PMID:12477932   PMID:20110353   PMID:23376485   PMID:23533145  


Genomics

Comparative Map Data
Ggact
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21599,969,246 - 99,998,343 (-)NCBI
Rnor_6.0 Ensembl15109,307,904 - 109,316,953 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.015109,307,683 - 109,336,779 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.015112,688,790 - 112,716,622 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415108,029,945 - 108,053,498 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.115108,045,724 - 108,069,278 (-)NCBI
Celera1598,739,747 - 98,763,312 (-)NCBICelera
Cytogenetic Map15q25NCBI
GGACT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl13100,530,164 - 100,589,528 (-)EnsemblGRCh38hg38GRCh38
GRCh3813100,530,180 - 100,588,789 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3713101,182,434 - 101,241,043 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh3713101,182,418 - 101,241,046 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361399,980,002 - 99,987,974 (-)NCBINCBI36hg18NCBI36
Celera1382,026,987 - 82,085,620 (-)NCBI
Cytogenetic Map13q32.3NCBI
HuRef1381,778,487 - 81,837,097 (-)NCBIHuRef
CHM1_113101,152,717 - 101,211,314 (-)NCBICHM1_1
Ggact
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914123,128,272 - 123,150,901 (-)NCBIGRCm39mm39
GRCm3814122,890,860 - 122,913,413 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14122,816,223 - 122,913,757 (-)EnsemblGRCm38mm10GRCm38
MGSCv3714123,290,082 - 123,312,387 (-)NCBIGRCm37mm9NCBIm37
MGSCv3614122,026,054 - 122,048,315 (-)NCBImm8
Celera14121,449,204 - 121,471,425 (-)NCBICelera
Cytogenetic Map14E5NCBI
Ggact
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540410,280,013 - 10,316,531 (+)NCBIChiLan1.0ChiLan1.0
GGACT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.113100,837,605 - 100,895,588 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13100,839,483 - 100,839,944 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01381,678,715 - 81,757,024 (-)NCBIMhudiblu_PPA_v0panPan3
GGACT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2250,429,190 - 50,470,657 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12250,429,066 - 50,471,624 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Ggact
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647210,127,305 - 10,167,543 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GGACT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11169,287,685 - 69,349,540 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21176,548,815 - 76,611,833 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GGACT
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1379,139,506 - 79,213,496 (-)NCBI
ChlSab1.1 Ensembl379,157,780 - 79,158,241 (-)Ensembl
Ggact
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479310,655,447 - 10,691,334 (+)NCBI

Position Markers
RH141187  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.015109,308,430 - 109,308,641NCBIRnor6.0
Rnor_5.015112,689,340 - 112,689,551UniSTSRnor5.0
RGSC_v3.415108,030,480 - 108,030,691UniSTSRGSC3.4
Celera1598,740,282 - 98,740,493UniSTS
RH 3.4 Map15716.8UniSTS
Cytogenetic Map15q25UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1565520564110520564Rat
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1575527634111246239Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1575761024109400896Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1583947714111246239Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1584050550111246239Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1584050550111246239Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:112
Count of miRNA genes:90
Interacting mature miRNAs:102
Transcripts:ENSRNOT00000019158
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 14 52 39 15 39 52 35 34 11
Low 29 5 2 4 2 8 11 22 7 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000019158   ⟹   ENSRNOP00000000118
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl15109,307,904 - 109,316,953 (-)Ensembl
RefSeq Acc Id: NM_001025634   ⟹   NP_001020805
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21599,969,285 - 99,992,839 (-)NCBI
Rnor_6.015109,307,895 - 109,331,447 (-)NCBI
Rnor_5.015112,688,790 - 112,716,622 (-)NCBI
RGSC_v3.415108,029,945 - 108,053,498 (-)RGD
Celera1598,739,747 - 98,763,312 (-)RGD
Sequence:
RefSeq Acc Id: NM_001310058   ⟹   NP_001296987
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21599,969,285 - 99,992,839 (-)NCBI
Rnor_6.015109,307,895 - 109,331,447 (-)NCBI
Celera1598,739,747 - 98,763,312 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006252512   ⟹   XP_006252574
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21599,969,246 - 99,992,923 (-)NCBI
Rnor_6.015109,307,683 - 109,332,796 (-)NCBI
Rnor_5.015112,688,790 - 112,716,622 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006252513   ⟹   XP_006252575
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21599,969,246 - 99,992,664 (-)NCBI
Rnor_6.015109,307,683 - 109,331,391 (-)NCBI
Rnor_5.015112,688,790 - 112,716,622 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006252514   ⟹   XP_006252576
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.015109,307,683 - 109,331,124 (-)NCBI
Rnor_5.015112,688,790 - 112,716,622 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006252520   ⟹   XP_006252582
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21599,969,246 - 99,998,343 (-)NCBI
Rnor_6.015109,307,683 - 109,336,779 (-)NCBI
Rnor_5.015112,688,790 - 112,716,622 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006252521   ⟹   XP_006252583
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21599,969,246 - 99,992,674 (-)NCBI
Rnor_6.015109,307,683 - 109,331,391 (-)NCBI
Rnor_5.015112,688,790 - 112,716,622 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006252522   ⟹   XP_006252584
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21599,969,246 - 99,992,503 (-)NCBI
Rnor_6.015109,307,683 - 109,331,125 (-)NCBI
Rnor_5.015112,688,790 - 112,716,622 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008770971   ⟹   XP_008769193
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.015109,307,683 - 109,336,779 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008770972   ⟹   XP_008769194
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.015109,307,683 - 109,320,926 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599640   ⟹   XP_017455129
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.015109,307,683 - 109,329,699 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039093202   ⟹   XP_038949130
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21599,969,246 - 99,992,872 (-)NCBI
RefSeq Acc Id: XM_039093203   ⟹   XP_038949131
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21599,969,246 - 99,992,541 (-)NCBI
RefSeq Acc Id: XM_039093204   ⟹   XP_038949132
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21599,969,246 - 99,991,091 (-)NCBI
RefSeq Acc Id: XM_039093205   ⟹   XP_038949133
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21599,969,246 - 99,992,502 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001020805   ⟸   NM_001025634
- Sequence:
RefSeq Acc Id: XP_006252582   ⟸   XM_006252520
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006252574   ⟸   XM_006252512
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006252575   ⟸   XM_006252513
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006252583   ⟸   XM_006252521
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006252576   ⟸   XM_006252514
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006252584   ⟸   XM_006252522
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008769193   ⟸   XM_008770971
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008769194   ⟸   XM_008770972
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001296987   ⟸   NM_001310058
- Sequence:
RefSeq Acc Id: XP_017455129   ⟸   XM_017599640
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000000118   ⟸   ENSRNOT00000019158
RefSeq Acc Id: XP_038949130   ⟸   XM_039093202
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038949131   ⟸   XM_039093203
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038949133   ⟸   XM_039093205
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038949132   ⟸   XM_039093204
- Peptide Label: isoform X2

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304748 AgrOrtholog
Ensembl Genes ENSRNOG00000027040 Ensembl, UniProtKB/Swiss-Prot
Ensembl Protein ENSRNOP00000000118 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000019158 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7386922 IMAGE-MGC_LOAD
InterPro AIG2-like UniProtKB/Swiss-Prot
  GGACT UniProtKB/Swiss-Prot
  GGCT-like UniProtKB/Swiss-Prot
  GGCT-like_sf UniProtKB/Swiss-Prot
MGC_CLONE MGC:112665 IMAGE-MGC_LOAD
NCBI Gene 290500 ENTREZGENE
PANTHER PTHR12510 UniProtKB/Swiss-Prot
Pfam GGACT UniProtKB/Swiss-Prot
PhenoGen Ggact PhenoGen
Superfamily-SCOP SSF110857 UniProtKB/Swiss-Prot
UniProt GGACT_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-09 A2ld1  AIG2-like domain 1  RGD1304748  similar to cDNA sequence BC006662  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1304748  similar to cDNA sequence BC006662  RGD1304748_predicted  similar to cDNA sequence BC006662 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1304748_predicted  similar to cDNA sequence BC006662 (predicted)  LOC290500_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC290500_predicted  similar to cDNA sequence BC006662 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL