Advanced Search (OLGA)

Gene: Golga6l9 (golgin A6 family like 9) Rattus norvegicus

Subscribe to Updates

Analyze

Symbol:

Golga6l9

Name:

golgin A6 family like 9

RGD ID:

1306441

Description:

Orthologous to human GOLGA6L9 (golgin A6 family like 9); INTERACTS WITH bisphenol A; PCB138; 2,3,7,8-tetrachlorodibenzodioxine (ortholog).

Type:

protein-coding

RefSeq Status:

PREDICTED

Previously known as:

hypothetical protein LOC290425; LOC290425; RGD1306441; similar to RIKEN cDNA 4921530L21; spermatid associated like; Spertl; uncharacterized protein LOC290425

RGD Orthologs

Human

Mouse

Dog

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	78,872,177 - 78,876,741 (+)	NCBI		GRCr8
mRatBN7.2	15	72,464,157 - 72,468,708 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	72,466,016 - 72,468,703 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	76,484,138 - 76,485,633 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	77,569,365 - 77,570,860 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	74,508,296 - 74,509,791 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	80,037,791 - 80,042,342 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	80,040,842 - 80,042,337 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	83,577,251 - 83,581,802 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	79,057,753 - 79,059,248 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	79,070,476 - 79,075,033 (+)	NCBI
Celera	15	71,764,068 - 71,765,563 (+)	NCBI		Celera
Cytogenetic Map	15	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Golga6l9	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	GOLGA6L9 (Homo sapiens)	6480464	Tetrachlorodibenzodioxin affects the expression of GOLGA6L9 mRNA	CTD	PMID:22574217
Golga6l9	Rat	3-isobutyl-1-methyl-7H-xanthine	multiple interactions	ISO	GOLGA6L9 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in decreased expression of GOLGA6L9 mRNA more ...	CTD	PMID:28628672
Golga6l9	Rat	4,4'-sulfonyldiphenol	multiple interactions	ISO	GOLGA6L9 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in decreased expression of GOLGA6L9 mRNA	CTD	PMID:28628672
Golga6l9	Rat	aristolochic acid A	decreases expression	ISO	GOLGA6L9 (Homo sapiens)	6480464	aristolochic acid I results in decreased expression of GOLGA6L9 mRNA	CTD	PMID:33212167
Golga6l9	Rat	bisphenol A	multiple interactions	ISO	GOLGA6L9 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in decreased expression of GOLGA6L9 mRNA	CTD	PMID:28628672
Golga6l9	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of GOLGA6L7 mRNA	CTD	PMID:25181051
Golga6l9	Rat	bisphenol F	multiple interactions	ISO	GOLGA6L9 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of GOLGA6L9 mRNA	CTD	PMID:28628672
Golga6l9	Rat	cadmium atom	decreases expression	ISO	GOLGA6L9 (Homo sapiens)	6480464	Cadmium results in decreased expression of GOLGA6L9 mRNA	CTD	PMID:24376830
Golga6l9	Rat	dexamethasone	multiple interactions	ISO	GOLGA6L9 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in decreased expression of GOLGA6L9 mRNA more ...	CTD	PMID:28628672
Golga6l9	Rat	epoxiconazole	increases expression	ISO	Ccdc202 (Mus musculus)	6480464	epoxiconazole results in increased expression of CCDC202 mRNA	CTD	PMID:35436446
Golga6l9	Rat	indometacin	multiple interactions	ISO	GOLGA6L9 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in decreased expression of GOLGA6L9 mRNA more ...	CTD	PMID:28628672
Golga6l9	Rat	PCB138	decreases expression	EXP		6480464	2 more ...	CTD	PMID:23829299
Golga6l9	Rat	silicon dioxide	increases expression	ISO	GOLGA6L9 (Homo sapiens)	6480464	Silicon Dioxide analog results in increased expression of GOLGA6L9 mRNA	CTD	PMID:25895662
Golga6l9	Rat	sodium arsenite	increases expression	ISO	GOLGA6L9 (Homo sapiens)	6480464	sodium arsenite results in increased expression of GOLGA6L9 mRNA	CTD	PMID:38568856
Golga6l9	Rat	sodium arsenite	decreases expression	ISO	GOLGA6L9 (Homo sapiens)	6480464	sodium arsenite results in decreased expression of GOLGA6L9 mRNA	CTD	PMID:34032870
Golga6l9	Rat	urethane	increases expression	ISO	GOLGA6L9 (Homo sapiens)	6480464	Urethane results in increased expression of GOLGA6L9 mRNA	CTD	PMID:28818685

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Golga6l9	Rat	protein binding	enables	ISO	GOLGA6L9 (Homo sapiens)	1624291	UniProtKB:A6NK89 more ...	RGD	PMID:32296183 and PMID:36217029

PMID:12477932	PMID:21873635

Golga6l9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	78,872,177 - 78,876,741 (+)	NCBI		GRCr8
mRatBN7.2	15	72,464,157 - 72,468,708 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	72,466,016 - 72,468,703 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	76,484,138 - 76,485,633 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	77,569,365 - 77,570,860 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	74,508,296 - 74,509,791 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	80,037,791 - 80,042,342 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	80,040,842 - 80,042,337 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	83,577,251 - 83,581,802 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	79,057,753 - 79,059,248 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	79,070,476 - 79,075,033 (+)	NCBI
Celera	15	71,764,068 - 71,765,563 (+)	NCBI		Celera
Cytogenetic Map	15	q21	NCBI

GOLGA6L9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	82,415,923 - 82,439,153 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	82,429,816 - 82,439,153 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	82,722,021 - 82,731,353 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	80,509,240 - 80,518,642 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Cytogenetic Map	15	q25.2	NCBI
CHM1_1	15	82,840,353 - 82,849,760 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	15	80,293,944 - 80,303,281 (+)	NCBI		T2T-CHM13v2.0

Ccdc202
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	96,114,791 - 96,120,216 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	96,118,690 - 96,120,216 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	95,881,254 - 95,882,780 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	95,881,254 - 95,882,780 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	96,280,485 - 96,281,994 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	94,764,400 - 94,765,909 (+)	NCBI		MGSCv36	mm8
Celera	14	94,437,061 - 94,438,570 (+)	NCBI		Celera
Cytogenetic Map	14	E2.1	NCBI
cM Map	14	46.92	NCBI

LOC102155880
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	51,423,804 - 51,425,629 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	50,032,337 - 50,034,139 (+)	NCBI		Dog10K_Boxer_Tasha

Variants in Golga6l9
22 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	90
Count of miRNA genes:	86
Interacting mature miRNAs:	88
Transcripts:	ENSRNOT00000043065
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
731177	Uae26	Urinary albumin excretion QTL 26	2.4	0.025	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	15	67588667	101769107	Rat
1300144	Rf23	Renal function QTL 23	3.61		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	15	40631268	98288169	Rat
1576315	Schws6	Schwannoma susceptibility QTL 6		0.0069	nervous system integrity trait (VT:0010566)	post-insult time of death (CMO:0002005)	15	53806152	98806152	Rat
1331729	Rf42	Renal function QTL 42	3.071		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	15	17362897	73690657	Rat
61477	Aia4	Adjuvant induced arthritis QTL 4	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	15	55596089	91365858	Rat
2300326	Plaw1	Placental weight QTL 1	15	0.005	placenta mass (VT:0004257)	placenta wet weight (CMO:0002088)	15	68327165	100062518	Rat
152025253	Hrtrt24	Heart rate QTL 24	3.82		heart pumping trait (VT:2000009)		15	27885774	86257085	Rat
724545	Niddm54	Non-insulin dependent diabetes mellitus QTL 54		0.02	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	15	50794494	73699215	Rat
1582227	Gluco30	Glucose level QTL 30	3.6	0.0003	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	15	28030665	82262678	Rat
1582228	Epfw3	Epididymal fat weight QTL 3	4.1	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	28030665	82262678	Rat
1578646	Bmd18	Bone mineral density QTL 18	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	15	22806240	98288169	Rat
631655	Bp126	Blood pressure QTL 126	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	15	58156477	101769107	Rat
1578647	Bmd17	Bone mineral density QTL 17	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	15	22806240	98288169	Rat
724548	Niddm55	Non-insulin dependent diabetes mellitus QTL 55		0.02	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	15	68327360	73699069	Rat
61424	Scl1	Serum cholesterol level QTL 1	7.7	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	15	16725528	80672115	Rat
1598828	Glom14	Glomerulus QTL 14	2.5		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	15	34054139	79054139	Rat
631516	Gluco31	Glucose level QTL 31	7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	15	55596089	95018120	Rat
2317050	Aia24	Adjuvant induced arthritis QTL 24	2.06		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	15	52847908	73690657	Rat
1582242	Gluco28	Glucose level QTL 28	3.3	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	15	28030665	82262678	Rat
2313080	Bss65	Bone structure and strength QTL 65	3.9	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	15	60990468	73690657	Rat
1578660	Bss19	Bone structure and strength QTL 19	4.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	15	22806240	98288169	Rat
1582244	Bw79	Body weight QTL 79	4	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	28030665	82262678	Rat
1582214	Stl21	Serum triglyceride level QTL 21	3.1	0.022	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	15	28030665	82262678	Rat

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
6	4	34	24	25	16	18	16	48	23	33	3	36	9


RefSeq Transcripts	NM_001106053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252386	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274168	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC079439	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000043065 ⟹ ENSRNOP00000048873

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	72,467,208 - 72,468,703 (+)	Ensembl
Rnor_6.0 Ensembl	15	80,040,842 - 80,042,337 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000117788 ⟹ ENSRNOP00000086271

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	72,466,016 - 72,468,688 (+)	Ensembl

RefSeq Acc Id:

NM_001106053 ⟹ NP_001099523

RefSeq Status:

PREDICTED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	78,875,241 - 78,876,736 (+)	NCBI
mRatBN7.2	15	72,467,208 - 72,468,703 (+)	NCBI
Rnor_6.0	15	80,040,842 - 80,042,337 (+)	NCBI
Rnor_5.0	15	83,577,251 - 83,581,802 (+)	NCBI
RGSC_v3.4	15	79,057,753 - 79,059,248 (+)	RGD
Celera	15	71,764,068 - 71,765,563 (+)	RGD

Sequence:

show sequence

GCAATGTAAGTCTGGCTGGTTGCCTCAATCTTTAACCCTCCTAGAACGCTAAGTAAATGCTCGGGCCTGTCTGAGCATTGTGGTCCATTAAGAAGTCAACAGACAGCCAAGACTACATGAACAAATTT
AGTACATTTTCTGTTGAGATTATCAGTAGTGCACCGAAAAACAATGAATATCTCTGGATCAAAACAAATACACAAAAGGAAAATACTGCGGTTGTTTTCTTGTTTCTCTTGTACCCAAAATCAAAAGA
AACTCAAACATAAATCCCAGGACGTGGAAAAAAAACTCTGTAGAGAAAATAAGGTGTTGAGAGATGAAAATAGGGCTCTGAGAAAAGACAACAAATTTCTCTGGGGCGAAAACAAAGCCTTAGGAAGA
GAAAATAAAACCTTCCGGATGGACAACCAGTTCATCAGGGAAAGAAATCATATCCTAAGGCAGCAGAACCAGCTACTCCGGAAGGTGAAAAGGTTGATTTCAGAGAACCCAAAACTGTCTGGGGAAGA
ATGCAATGCCTTGAACACAGAAGGAAGGTCTTTTTGGCAACAGAATCGAGCCATGGAAGCTCAGATCACAGCTCTCCGGCAGCAAGAGAAAGCCTTCCAGAATGAGGCCAAAGCCTTGCATGAGGAGA
TCAAGTCCCTGTGTGAGGAGACCAAGGCTCTACAACACCAAGAGAGGGCTCTCAGGATGGAAGAGAAAGCCCTGCTGAGGGACGGAGTGGCTGCAGAGCTGGCAGAGGCCCTGACCAAGGAGGGAGCT
GCTCTAGAGATGGAAGAACAGGCTTTGTGGAAGGAAGAGCAGGCTCTCAGGGAGGAGAACAAGGCGCTGAGAGAAGAGCACGGGGCTCTACAAGACGAGGAAGTTGCCCTGCAGGAAGAGGCGAGAAT
CCTCCAGGAGTGGAATAATCTTCTTCAGGGGAAGATCACAAACAACCTCCCAGAGAATATGAATAACCAAGACCCAGAGAAGTGCGAACTAAGAATGTAACCATGAAGTCATGACAATAATTGTAATT
CCAGAACATAAAAGTAGAATTCGATCGCGTAATGTTATTGTCAGAAGCCTCAGAAATTGACGTGCTCAATATTTGGTCCTTGAAACAAAATAAAGGCCTGAGAAATAAAT

hide sequence

RefSeq Acc Id:

XM_006252385 ⟹ XP_006252447

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	78,875,098 - 78,876,741 (+)	NCBI
mRatBN7.2	15	72,467,064 - 72,468,708 (+)	NCBI
Rnor_6.0	15	80,040,780 - 80,042,342 (+)	NCBI
Rnor_5.0	15	83,577,251 - 83,581,802 (+)	NCBI

Sequence:

show sequence

GTTTTGCTTACTGGTTTTCCTTTAGTAACAGAAACCAGGCTACAAGTGACTTAGAGAACACAGCAATCGGGCCTGTCTGAGCATTGTGGTCCATTAAGAAGTCAACAGACAGCCAAGACTACATGAAC
AAATTTAGTACATTTTCTGTTGAGATTATCAGTAGTGCACCGAAAAACAATGAATATCTCTGGATCAAAACAAATACACAAAAGGAAAATACTGCGGTTGTTTTCTTGTTTCTCTTGTACCCAAAATC
AAAAGAAACTCAAACATAAATCCCAGGACGTGGAAAAAAAACTCTGTAGAGAAAATAAGGTGTTGAGAGATGAAAATAGGGCTCTGAGAAAAGACAACAAATTTCTCTGGGGCGAAAACAAAGCCTTA
GGAAGAGAAAATAAAACCTTCCGGATGGACAACCAGTTCATCAGGGAAAGAAATCATATCCTAAGGCAGCAGAACCAGCTACTCCGGAAGGTGAAAAGGTTGATTTCAGAGAACCCAAAACTGTCTGG
GGAAGAATGCAATGCCTTGAACACAGAAGGAAGGTCTTTTTGGCAACAGAATCGAGCCATGGAAGCTCAGATCACAGCTCTCCGGCAGCAAGAGAAAGCCTTCCAGAATGAGGCCAAAGCCTTGCATG
AGGAGATCAAGTCCCTGTGTGAGGAGACCAAGGCTCTACAACACCAAGAGAGGGCTCTCAGGATGGAAGAGAAAGCCCTGCTGAGGGACGGAGTGGCTGCAGAGCTGGCAGAGGCCCTGACCAAGGAG
GGAGCTGCTCTAGAGATGGAAGAACAGGCTTTGTGGAAGGAAGAGCAGGCTCTCAGGGAGGAGAACAAGGCGCTGAGAGAAGAGCACGGGGCTCTACAAGACGAGGAAGTTGCCCTGCAGGAAGAGGC
GAGAATCCTCCAGGAGTGGAATAATCTTCTTCAGGGGAAGATCACAAACAACCTCCCAGAGAATATGAATAACCAAGACCCAGAGAAGTGCGAACTAAGAATGTAACCATGAAGTCATGACAATAATT
GTAATTCCAGAACATAAAAGTAGAATTCGATCGCGTAATGTTATTGTCAGAAGCCTCAGAAATTGACGTGCTCAATATTTGGTCCTTGAAACAAAATAAAGGCCTGAGAAATAAATTAAAA

hide sequence

RefSeq Acc Id:

XM_006252386 ⟹ XP_006252448

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	78,872,177 - 78,876,741 (+)	NCBI
mRatBN7.2	15	72,464,157 - 72,468,708 (+)	NCBI
Rnor_6.0	15	80,037,791 - 80,042,342 (+)	NCBI
Rnor_5.0	15	83,577,251 - 83,581,802 (+)	NCBI

Sequence:

show sequence

GCAAGCTACAGAAGCTTGAATCCAGCAGCACCATTCCTATGCTACAGAGAATGCTTAAGTAACTTAATTCTTCTCACAAAACCTGATGTTGTTGGCAGCTTCAAAACTGGCTGGGTGCCCTGACATGA
ATTGCAGATTCTCTGCGCTCCTTTGGAGAGGAGTTTGAGGAGGATGAAAGCAGATGCAGGCAGACACAGATGGAGCCCAGAAGCCAAATAGCATGAGGCTCTCCTCACTCCACCAGTGGGTTTGGCAG
TTTCACACTGTTTTAAGGAAGAAAGAAATGCCAGAAGCTACACCCATGAAGTTTCACCTAAATATATGCCCTAAAGAAGGAAGTCACTAATAGACATTCGGATGAGGGCAGAGGAAAGTTCGAGAGGC
TCAGAATCAGCAGAGAAGGGACTAACAAGCCAGGGATTGCTCAGCGGGCCTGTCTGAGCATTGTGGTCCATTAAGAAGTCAACAGACAGCCAAGACTACATGAACAAATTTAGTACATTTTCTGTTGA
GATTATCAGTAGTGCACCGAAAAACAATGAATATCTCTGGATCAAAACAAATACACAAAAGGAAAATACTGCGGTTGTTTTCTTGTTTCTCTTGTACCCAAAATCAAAAGAAACTCAAACATAAATCC
CAGGACGTGGAAAAAAAACTCTGTAGAGAAAATAAGGTGTTGAGAGATGAAAATAGGGCTCTGAGAAAAGACAACAAATTTCTCTGGGGCGAAAACAAAGCCTTAGGAAGAGAAAATAAAACCTTCCG
GATGGACAACCAGTTCATCAGGGAAAGAAATCATATCCTAAGGCAGCAGAACCAGCTACTCCGGAAGGTGAAAAGGTTGATTTCAGAGAACCCAAAACTGTCTGGGGAAGAATGCAATGCCTTGAACA
CAGAAGGAAGGTCTTTTTGGCAACAGAATCGAGCCATGGAAGCTCAGATCACAGCTCTCCGGCAGCAAGAGAAAGCCTTCCAGAATGAGGCCAAAGCCTTGCATGAGGAGATCAAGTCCCTGTGTGAG
GAGACCAAGGCTCTACAACACCAAGAGAGGGCTCTCAGGATGGAAGAGAAAGCCCTGCTGAGGGACGGAGTGGCTGCAGAGCTGGCAGAGGCCCTGACCAAGGAGGGAGCTGCTCTAGAGATGGAAGA
ACAGGCTTTGTGGAAGGAAGAGCAGGCTCTCAGGGAGGAGAACAAGGCGCTGAGAGAAGAGCACGGGGCTCTACAAGACGAGGAAGTTGCCCTGCAGGAAGAGGCGAGAATCCTCCAGGAGTGGAATA
ATCTTCTTCAGGGGAAGATCACAAACAACCTCCCAGAGAATATGAATAACCAAGACCCAGAGAAGTGCGAACTAAGAATGTAACCATGAAGTCATGACAATAATTGTAATTCCAGAACATAAAAGTAG
AATTCGATCGCGTAATGTTATTGTCAGAAGCCTCAGAAATTGACGTGCTCAATATTTGGTCCTTGAAACAAAATAAAGGCCTGAGAAATAAATTAAAA

hide sequence

RefSeq Acc Id:

XM_063274168 ⟹ XP_063130238

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	78,875,221 - 78,876,741 (+)	NCBI


Protein RefSeqs	NP_001099523	(Get FASTA)	NCBI Sequence Viewer
	XP_006252447	(Get FASTA)	NCBI Sequence Viewer
	XP_006252448	(Get FASTA)	NCBI Sequence Viewer
	XP_063130238	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM02405	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000048873.2
	ENSRNOP00000086271.1

RefSeq Acc Id:

NP_001099523 ⟸ NM_001106053

- UniProtKB:

D4ADT0 (UniProtKB/TrEMBL), A6HU42 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MNISGSKQIHKRKILRLFSCFSCTQNQKKLKHKSQDVEKKLCRENKVLRDENRALRKDNKFLWGENKALGRENKTFRMDNQFIRERNHILRQQNQLLRKVKRLISENPKLSGEECNALNTEGRSFWQQ
NRAMEAQITALRQQEKAFQNEAKALHEEIKSLCEETKALQHQERALRMEEKALLRDGVAAELAEALTKEGAALEMEEQALWKEEQALREENKALREEHGALQDEEVALQEEARILQEWNNLLQGKITN
NLPENMNNQDPEKCELRM

hide sequence

RefSeq Acc Id:	XP_006252448 ⟸ XM_006252386
- Peptide Label:	isoform X1
- UniProtKB:	D4ADT0 (UniProtKB/TrEMBL), A6HU42 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNISGSKQIHKRKILRLFSCFSCTQNQKKLKHKSQDVEKKLCRENKVLRDENRALRKDNKFLWG ENKALGRENKTFRMDNQFIRERNHILRQQNQLLRKVKRLISENPKLSGEECNALNTEGRSFWQQNRAMEAQITALRQQEKAFQNEAKALHEEIKSLCEETKALQHQERALRMEEKALLRDGVAAELAE ALTKEGAALEMEEQALWKEEQALREENKALREEHGALQDEEVALQEEARILQEWNNLLQGKITNNLPENMNNQDPEKCELRM hide sequence

RefSeq Acc Id:	XP_006252447 ⟸ XM_006252385
- Peptide Label:	isoform X1
- UniProtKB:	D4ADT0 (UniProtKB/TrEMBL), A6HU42 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNISGSKQIHKRKILRLFSCFSCTQNQKKLKHKSQDVEKKLCRENKVLRDENRALRKDNKFLWGENKALGRENKTFRMDNQFIRERNHILRQQNQLLRKVKRLISENPKLSGEECNALNTEGRSFWQQ NRAMEAQITALRQQEKAFQNEAKALHEEIKSLCEETKALQHQERALRMEEKALLRDGVAAELAEALTKEGAALEMEEQALWKEEQALREENKALREEHGALQDEEVALQEEARILQEWNNLLQGKITN NLPENMNNQDPEKCELRM hide sequence

Ensembl Acc Id:

ENSRNOP00000048873 ⟸ ENSRNOT00000043065

Ensembl Acc Id:

ENSRNOP00000086271 ⟸ ENSRNOT00000117788

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4ADT0-F1-model_v2	AlphaFold	D4ADT0	1-274	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13699858

Promoter ID:

EPDNEW_R10381

Type:

single initiation site

Name:

RGD1306441_1

Description:

similar to RIKEN cDNA 4921530L21

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	15	80,040,809 - 80,040,869	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-12817	BioCyc
Ensembl Genes	ENSRNOG00000031449	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000043065.4	UniProtKB/TrEMBL
	ENSRNOT00000117788.1	UniProtKB/TrEMBL
InterPro	ZBED2/3	UniProtKB/TrEMBL
KEGG Report	rno:290425	UniProtKB/TrEMBL
NCBI Gene	290425	ENTREZGENE
PANTHER	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 3	UniProtKB/TrEMBL
	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 3	UniProtKB/TrEMBL
PhenoGen	Golga6l9	PhenoGen
RatGTEx	ENSRNOG00000031449	RatGTEx
UniProt	A6HU42	ENTREZGENE, UniProtKB/TrEMBL
	D4ADT0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-10-27	Golga6l9	golgin A6 family like 9	Spertl	spermatid associated like	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2022-09-15	Spertl	spermatid associated like	Golga6l9	golgin A6 family like 9	Name and Symbol changed	629549	APPROVED
2022-07-05	Golga6l9	golgin A6 family like 9	RGD1306441	similar to RIKEN cDNA 4921530L21	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1306441	similar to RIKEN cDNA 4921530L21	RGD1306441_predicted	similar to RIKEN cDNA 4921530L21 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1306441_predicted	similar to RIKEN cDNA 4921530L21 (predicted)	LOC290425_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC290425_predicted	similar to RIKEN cDNA 4921530L21 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Send us a Message