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ONTOLOGY REPORT - ANNOTATIONS

Term:chromatin DNA binding
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Accession:GO:0031490 term browser browse the term
Definition:Binding to DNA that is assembled into chromatin.


show annotations for term's descendants           Sort by:
chromatin DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn4 actinin alpha 4 enables ISO
IEA		 (PMID:25411248)
GO_REF:0000107		 RGD
Ensembl		 PMID:25411248 GO_REF:0000107 NCBI chr 1:84,182,783...84,251,867
Ensembl chr 1:84,182,788...84,251,847 		JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 enables ISO
ISS
IEA		 (PMID:11809897)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:11809897 GO_REF:0000024 GO_REF:0000107 NCBI chr15:24,144,595...24,146,785
Ensembl chr15:24,144,362...24,146,785 		JBrowse link
G Atoh1 atonal bHLH transcription factor 1 enables ISO (PMID:15788459) RGD PMID:15788459 NCBI chr 4:93,912,068...93,914,163
Ensembl chr 4:93,912,068...93,914,154 		JBrowse link
G Bap1 BRCA1 associated deubiquitinase 1 enables IEA
ISO		 GO_REF:0000107
(PMID:22878500)		 Ensembl
RGD		 PMID:22878500 GO_REF:0000107 NCBI chr16:6,446,709...6,455,535
Ensembl chr16:6,446,709...6,455,535 		JBrowse link
G Bcl6 BCL6, transcription repressor enables ISO (PMID:17125145) RGD PMID:17125145 NCBI chr11:76,854,090...76,877,389
Ensembl chr11:76,854,090...76,877,389 		JBrowse link
G Cebpa CCAAT/enhancer binding protein alpha enables ISO (PMID:25921091) RGD PMID:25921091 NCBI chr 1:87,759,631...87,762,303
Ensembl chr 1:87,759,433...87,762,412 		JBrowse link
G Cebpb CCAAT/enhancer binding protein beta enables IEA
ISO		 GO_REF:0000107
(PMID:25921091)		 Ensembl
RGD		 PMID:25921091 GO_REF:0000107 NCBI chr 3:156,398,035...156,399,466
Ensembl chr 3:156,397,052...156,399,473 		JBrowse link
G Clock clock circadian regulator enables IEA
ISO
ISS		 GO_REF:0000107
(PMID:24610784)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:24610784 GO_REF:0000024 GO_REF:0000107 NCBI chr14:31,908,542...31,992,673
Ensembl chr14:31,908,566...31,990,400 		JBrowse link
G Crebbp CREB binding protein enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:11,335,551...11,461,888
Ensembl chr10:11,335,953...11,461,888 		JBrowse link
G Ddx17 DEAD-box helicase 17 enables ISO (PMID:29431742) RGD PMID:29431742 NCBI chr 7:111,091,127...111,109,353
Ensembl chr 7:111,089,445...111,109,193 		JBrowse link
G Dhx9 DExH-box helicase 9 enables ISO (PMID:24049074) RGD PMID:24049074 NCBI chr13:65,602,322...65,639,098
Ensembl chr13:65,602,323...65,639,069 		JBrowse link
G Eomes eomesodermin enables ISO (PMID:30186101) RGD PMID:30186101 NCBI chr 8:118,181,340...118,189,186
Ensembl chr 8:118,181,777...118,188,316 		JBrowse link
G Ep300 E1A binding protein p300 enables IDA
ISO		 (PMID:18458156) RGD PMID:18458156 PMID:20702579 RGD:5128544 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088 		JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit enables ISO (PMID:19734898)
(PMID:18483221), (PMID:24137001)		 RGD PMID:18483221 PMID:19734898 PMID:24137001 NCBI chr 4:76,624,399...76,687,362
Ensembl chr 4:76,624,399...76,687,362 		JBrowse link
G Foxc2 forkhead box C2 enables ISO (PMID:16456100) RGD PMID:16456100 NCBI chr19:49,186,034...49,188,736
Ensembl chr19:49,185,662...49,188,737 		JBrowse link
G Foxo1 forkhead box O1 enables ISO (PMID:29320745) RGD PMID:29320745 NCBI chr 2:136,312,168...136,390,603
Ensembl chr 2:136,312,168...136,387,790 		JBrowse link
G Foxo3 forkhead box O3 enables ISO (PMID:17521387) RGD PMID:17521387 NCBI chr20:45,669,708...45,764,606
Ensembl chr20:45,672,995...45,764,561 		JBrowse link
G Gata1 GATA binding protein 1 enables ISO
ISS		 (PMID:22235304)
GO_REF:0000024		 RGD
UniProt		 PMID:22235304 GO_REF:0000024 NCBI chr  X:14,529,706...14,537,530
Ensembl chr  X:14,529,702...14,537,530 		JBrowse link
G Gli2 GLI family zinc finger 2 enables ISO (PMID:23201751) RGD PMID:23201751 NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Grhl1 grainyhead-like transcription factor 1 enables ISO (PMID:21081122) RGD PMID:21081122 NCBI chr 6:41,207,325...41,257,516
Ensembl chr 6:41,207,348...41,254,301 		JBrowse link
G Grhl2 grainyhead-like transcription factor 2 enables ISO (PMID:21081122) RGD PMID:21081122 NCBI chr 7:68,400,287...68,530,269
Ensembl chr 7:68,400,477...68,530,258 		JBrowse link
G Grhl3 grainyhead-like transcription factor 3 enables ISO (PMID:21081122) RGD PMID:21081122 NCBI chr 5:147,774,161...147,806,291
Ensembl chr 5:147,774,160...147,806,160 		JBrowse link
G H1f0 H1.0 linker histone enables ISO (PMID:15911621) RGD PMID:15911621 NCBI chr 7:110,592,834...110,594,694
Ensembl chr 7:110,592,208...110,594,694 		JBrowse link
G H1f1 H1.1 linker histone, cluster member enables ISO (PMID:15911621) RGD PMID:15911621 NCBI chr17:41,366,268...41,367,011
Ensembl chr17:41,366,268...41,367,011 		JBrowse link
G H1f2 H1.2 linker histone, cluster member enables ISO (PMID:15911621) RGD PMID:15911621 NCBI chr17:41,391,106...41,392,597
Ensembl chr17:41,388,477...41,392,635 		JBrowse link
G H1f4 H1.4 linker histone, cluster member enables ISO (PMID:15911621) RGD PMID:15911621 NCBI chr17:41,486,574...41,487,355
Ensembl chr17:41,486,560...41,487,403 		JBrowse link
G H1f5 H1.5 linker histone, cluster member enables ISO (PMID:15911621), (PMID:22956909) RGD PMID:15911621 PMID:22956909 NCBI chr17:42,726,132...42,727,162
Ensembl chr17:42,726,127...42,769,160 		JBrowse link
G H2az1 H2A.Z variant histone 1 enables ISO (PMID:19834540), (PMID:23637611) RGD PMID:19834540 PMID:23637611 NCBI chr 2:226,355,668...226,357,984
Ensembl chr 2:226,355,708...226,358,485 		JBrowse link
G H4f3 H1.3 linker histone, cluster member enables ISO (PMID:15911621) RGD PMID:15911621 NCBI chr17:41,551,524...41,552,303
Ensembl chr17:41,529,667...41,552,334 		JBrowse link
G Hcfc1 host cell factor C1 enables ISO (PMID:22878500) RGD PMID:22878500 NCBI chr  X:151,687,779...151,712,688
Ensembl chr  X:151,687,779...151,712,638 		JBrowse link
G Hdac2 histone deacetylase 2 enables ISO (PMID:18458156) RGD PMID:18458156 NCBI chr20:40,548,244...40,571,609
Ensembl chr20:40,548,250...40,571,609 		JBrowse link
G Hdac3 histone deacetylase 3 enables ISO (PMID:18458156), (PMID:32467224) RGD PMID:18458156 PMID:32467224 NCBI chr18:29,770,637...29,789,850
Ensembl chr18:29,770,636...29,793,856 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U enables ISO
IEA		 (PMID:11003645)
GO_REF:0000107		 RGD
Ensembl		 PMID:11003645 GO_REF:0000107 NCBI chr13:90,069,058...90,086,905
Ensembl chr13:90,074,181...90,086,588 		JBrowse link
G Hr HR, lysine demethylase and nuclear receptor corepressor enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:45,626,835...45,646,313
Ensembl chr15:45,626,835...45,646,313 		JBrowse link
G Hsf1 heat shock transcription factor 1 enables ISO (PMID:21085490) RGD PMID:21085490 NCBI chr 7:108,196,040...108,223,011
Ensembl chr 7:108,196,056...108,223,011 		JBrowse link
G Hsf3 heat shock transcription factor 3 enables ISO (PMID:19864465) RGD PMID:19864465 NCBI chr  X:61,181,376...61,233,724
Ensembl chr  X:61,182,298...61,295,686 		JBrowse link
G Insm1 INSM transcriptional repressor 1 enables ISO (PMID:16569215), (PMID:18417529) RGD PMID:16569215 PMID:18417529 NCBI chr 3:133,640,030...133,642,963
Ensembl chr 3:133,639,580...133,643,003 		JBrowse link
G Jmjd1c jumonji domain containing 1C enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:21,332,147...21,494,220
Ensembl chr20:21,332,147...21,463,122 		JBrowse link
G Kdm3a lysine demethylase 3A enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:103,630,907...103,675,073
Ensembl chr 4:103,630,908...103,675,073 		JBrowse link
G Kdm3b lysine demethylase 3B enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:26,380,859...26,436,701
Ensembl chr18:26,380,964...26,436,628 		JBrowse link
G Kdm4d lysine demethylase 4D enables ISO (PMID:6953429) RGD PMID:6953429 NCBI chr 8:11,279,756...11,304,920
Ensembl chr 8:11,268,859...11,305,290 		JBrowse link
G Kdm5a lysine demethylase 5A enables ISO (PMID:18483221) RGD PMID:18483221 NCBI chr 4:153,565,909...153,643,912
Ensembl chr 4:153,565,846...153,642,422 		JBrowse link
G Kdm6a lysine demethylase 6A enables IBA
ISO		 GO_REF:0000033
(PMID:23658530)		 GO_Central
RGD		 PMID:23658530 GO_REF:0000033 NCBI chr  X:4,337,466...4,477,100
Ensembl chr  X:4,337,750...4,477,062 		JBrowse link
G Kdm6b lysine demethylase 6B enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:54,120,716...54,142,212
Ensembl chr10:54,121,848...54,130,794 		JBrowse link
G Klf4 KLF transcription factor 4 enables ISO (PMID:32467224) RGD PMID:32467224 NCBI chr 5:70,278,843...70,283,751
Ensembl chr 5:70,278,972...70,283,602 		JBrowse link
G Lemd3 LEM domain containing 3 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:56,415,053...56,499,047
Ensembl chr 7:56,305,448...56,502,474 		JBrowse link
G Macroh2a1 macroH2A.1 histone enables ISO
IEA		 (PMID:19734898), (PMID:24071584)
GO_REF:0000104		 RGD
UniProt		 PMID:19734898 PMID:24071584 GO_REF:0000104 NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072 		JBrowse link
G Macroh2a2 macroH2A.2 histone enables ISO (PMID:19734898) RGD PMID:19734898 NCBI chr20:29,678,194...29,727,867
Ensembl chr20:29,678,222...29,727,891 		JBrowse link
G Mecp2 methyl CpG binding protein 2 IDA RGD PMID:9038338 RGD:1601325 NCBI chr  X:151,781,177...151,844,687
Ensembl chr  X:151,789,930...151,844,689 		JBrowse link
G Med1 mediator complex subunit 1 IDA RGD PMID:20702579 RGD:5128544 NCBI chr10:83,145,538...83,189,260
Ensembl chr10:83,145,568...83,189,299 		JBrowse link
G Myod1 myogenic differentiation 1 enables ISO (PMID:25085416) RGD PMID:25085416 NCBI chr 1:96,884,864...96,887,574
Ensembl chr 1:96,884,948...96,887,554 		JBrowse link
G Myog myogenin enables IEA
ISO		 GO_REF:0000107
(PMID:22847234), (PMID:25085416)		 Ensembl
RGD		 PMID:22847234 PMID:25085416 GO_REF:0000107 NCBI chr13:45,745,455...45,748,044
Ensembl chr13:45,745,436...45,748,039 		JBrowse link
G Neurog3 neurogenin 3 enables ISO (PMID:16511571) RGD PMID:16511571 NCBI chr20:30,079,780...30,081,262
Ensembl chr20:30,079,780...30,081,262 		JBrowse link
G Nkap NFKB activating protein enables IEA
ISO		 GO_REF:0000107
(PMID:20610818)		 Ensembl
RGD		 PMID:20610818 GO_REF:0000107 NCBI chr  X:116,373,031...116,392,677
Ensembl chr  X:116,372,839...116,394,945 		JBrowse link
G Notch1 notch receptor 1 enables ISO (PMID:17658278) RGD PMID:17658278 NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
G Nr1h2 nuclear receptor subfamily 1, group H, member 2 enables IEA
ISO		 GO_REF:0000107
(PMID:29431742)		 Ensembl
RGD		 PMID:29431742 GO_REF:0000107 NCBI chr 1:95,041,967...95,047,358
Ensembl chr 1:95,041,967...95,047,377 		JBrowse link
G Nr1h3 nuclear receptor subfamily 1, group H, member 3 enables ISO
IEA		 MGI:2181380 (PMID:29431742)
GO_REF:0000107		 RGD
Ensembl		 PMID:29431742 GO_REF:0000107 NCBI chr 3:77,158,808...77,168,907
Ensembl chr 3:77,158,808...77,168,722 		JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase enables IEA
ISO		 GO_REF:0000107
(PMID:22878500)		 Ensembl
RGD		 PMID:22878500 GO_REF:0000107 NCBI chr  X:66,771,278...66,816,148
Ensembl chr  X:66,771,349...66,816,146 		JBrowse link
G Pax6 paired box 6 enables IEA
ISO		 GO_REF:0000107
(PMID:30186101)		 Ensembl
RGD		 PMID:30186101 GO_REF:0000107 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Per1 period circadian regulator 1 enables IEA
ISO
ISS		 GO_REF:0000107
(PMID:24610784)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:24610784 GO_REF:0000024 GO_REF:0000107 NCBI chr10:53,800,126...53,814,963
Ensembl chr10:53,805,535...53,814,431 		JBrowse link
G Pitx2 paired-like homeodomain 2 enables ISO (PMID:21035439) RGD PMID:21035439 NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293 		JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:75,973,941...75,977,175
Ensembl chr 5:75,974,717...75,977,231
Ensembl chr 7:75,974,717...75,977,231 		JBrowse link
G Pole3-ps2 DNA polymerase epsilon 3, accessory subunit, pseudogene 2 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:26,135,927...26,136,417
Ensembl chr17:26,135,927...26,136,235
Ensembl chr17:26,135,927...26,136,235 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 enables ISO (PMID:24268575) RGD PMID:24268575 NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891 		JBrowse link
G Ppargc1a PPARG coactivator 1 alpha enables ISS
ISO
IEA		 GO_REF:0000024
(PMID:17952069)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:17952069 GO_REF:0000024 GO_REF:0000107 NCBI chr14:58,860,752...59,516,525
Ensembl chr14:58,861,144...59,512,656 		JBrowse link
G Prdm14 PR/SET domain 14 enables ISO (PMID:24268575) RGD PMID:24268575 NCBI chr 5:6,082,163...6,092,712
Ensembl chr 5:6,082,442...6,092,712 		JBrowse link
G Rara retinoic acid receptor, alpha enables ISO (PMID:19917671) RGD PMID:19917671 NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142 		JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit enables ISO (PMID:25411248) RGD PMID:25411248 NCBI chr 1:202,925,001...202,935,484
Ensembl chr 1:202,924,945...202,935,484 		JBrowse link
G Runx2 RUNX family transcription factor 2 enables IEA
ISO		 GO_REF:0000107
(PMID:21930712)		 Ensembl
RGD		 PMID:21930712 GO_REF:0000107 NCBI chr 9:16,167,504...16,492,826
Ensembl chr 9:16,167,482...16,492,167 		JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 enables ISO (PMID:23637611) RGD PMID:23637611 NCBI chr 1:95,902,014...95,915,247
Ensembl chr 1:95,901,701...95,915,342 		JBrowse link
G Rxra retinoid X receptor alpha enables ISO (PMID:17952069), (PMID:29431742) RGD PMID:17952069 PMID:29431742 NCBI chr 3:10,989,832...11,076,366
Ensembl chr 3:10,989,832...11,073,712 		JBrowse link
G Rxrb retinoid X receptor beta enables ISO (PMID:29431742) RGD PMID:29431742 NCBI chr20:4,816,813...4,823,267
Ensembl chr20:4,816,815...4,828,773 		JBrowse link
G Sbno1 strawberry notch homolog 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:32,175,176...32,234,200
Ensembl chr12:32,185,485...32,230,158 		JBrowse link
G Sbno2 strawberry notch homolog 2 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:9,605,572...9,649,529
Ensembl chr 7:9,605,627...9,649,527 		JBrowse link
G Sirt6 sirtuin 6 enables ISO (PMID:33067423) RGD PMID:33067423 NCBI chr 7:8,082,312...8,087,776
Ensembl chr 7:8,082,364...8,098,914 		JBrowse link
G Smad3 SMAD family member 3 enables ISO (PMID:16224064) RGD PMID:16224064 NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960 		JBrowse link
G Sox2 SRY-box transcription factor 2 enables ISO (PMID:24268575) RGD PMID:24268575 NCBI chr 2:117,536,929...117,539,340
Ensembl chr 2:117,536,929...117,539,338 		JBrowse link
G Srf serum response factor enables ISO (PMID:18458156) RGD PMID:18458156 NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 enables ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:17344214)		 UniProt
Ensembl
RGD		 PMID:17344214 GO_REF:0000024 GO_REF:0000107 NCBI chr10:85,811,206...85,863,057
Ensembl chr10:85,811,218...85,863,057 		JBrowse link
G Suz12 SUZ12 polycomb repressive complex 2 subunit enables IBA
ISO		 GO_REF:0000033
(PMID:18483221)		 GO_Central
RGD		 PMID:18483221 GO_REF:0000033 NCBI chr10:64,967,035...65,012,916
Ensembl chr10:64,966,967...65,012,738 		JBrowse link
G Tbr1 T-box brain transcription factor 1 enables ISO (PMID:30186101) RGD PMID:30186101 NCBI chr 3:46,350,237...46,368,397
Ensembl chr 3:46,351,213...46,361,041 		JBrowse link
G Thra thyroid hormone receptor alpha enables IEA
ISO		 GO_REF:0000107
(PMID:17952069)		 Ensembl
RGD		 PMID:17952069 GO_REF:0000107 NCBI chr10:83,701,885...83,729,408
Ensembl chr10:83,700,755...83,729,936 		JBrowse link
G Thrb thyroid hormone receptor beta enables IEA
ISO		 GO_REF:0000107
(PMID:17952069)		 Ensembl
RGD		 PMID:17952069 GO_REF:0000107 NCBI chr15:7,685,180...8,031,920
Ensembl chr15:7,685,180...7,882,916 		JBrowse link
G Top1 DNA topoisomerase I IDA RGD PMID:1332866 RGD:1580856 NCBI chr 3:149,293,469...149,376,618
Ensembl chr 3:149,293,403...149,376,623 		JBrowse link
G Tox thymocyte selection-associated high mobility group box enables IBA
ISO		 GO_REF:0000033
(PMID:25527292)		 GO_Central
RGD		 PMID:25527292 GO_REF:0000033 NCBI chr 5:19,874,994...20,171,272
Ensembl chr 5:19,874,467...20,171,272 		JBrowse link
G Tox2 TOX high mobility group box family member 2 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:151,853,294...151,980,086
Ensembl chr 3:151,853,294...151,980,749 		JBrowse link
G Tox3 TOX high mobility group box family member 3 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:16,648,338...16,757,151
Ensembl chr19:16,648,342...16,757,148 		JBrowse link
G Tox4 TOX high mobility group box family member 4 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:24,989,246...25,002,833
Ensembl chr15:24,988,853...25,002,833 		JBrowse link
G Vax1 ventral anterior homeobox 1 enables ISO (PMID:15905411) RGD PMID:15905411 NCBI chr 1:258,324,571...258,342,396
Ensembl chr 1:258,326,276...258,330,192 		JBrowse link
G Vax2 ventral anterior homeobox 2 enables IEA
ISO		 GO_REF:0000107
(PMID:15905411)		 Ensembl
RGD		 PMID:15905411 GO_REF:0000107 NCBI chr 4:116,195,528...116,219,597
Ensembl chr 4:116,195,528...116,219,594 		JBrowse link
G Wbp2 WW domain binding protein 2 enables ISO
IBA
IEA		 (PMID:23233354)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:23233354 GO_REF:0000033 GO_REF:0000107 NCBI chr10:101,312,476...101,320,775
Ensembl chr10:101,312,446...101,320,736 		JBrowse link
G Wbp2nl WBP2 N-terminal like enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:113,814,793...113,831,974
Ensembl chr 7:113,814,992...113,831,333 		JBrowse link
G Xbp1 X-box binding protein 1 enables ISS
ISO		 GO_REF:0000024
(PMID:25280941)		 UniProt
RGD		 PMID:25280941 GO_REF:0000024 NCBI chr14:80,390,629...80,395,713
Ensembl chr14:80,390,643...80,395,693 		JBrowse link
G Zic2 Zic family member 2 enables ISO (PMID:20676059) RGD PMID:20676059 NCBI chr15:99,576,697...99,581,522
Ensembl chr15:99,576,697...99,581,522 		JBrowse link
chromatin insulator sequence binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctcf CCCTC-binding factor enables ISO
IEA
IBA		 (PMID:17827499)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:17827499 GO_REF:0000033 GO_REF:0000107 NCBI chr19:33,521,726...33,571,124
Ensembl chr19:33,529,319...33,571,123 		JBrowse link
G Repin1 replication initiator 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:77,548,724...77,554,242
Ensembl chr 4:77,548,849...77,554,257 		JBrowse link
G Zfp711 zinc finger protein 711 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:77,646,300...77,679,398
Ensembl chr  X:77,646,558...77,678,045 		JBrowse link
G Zfx zinc finger protein X-linked enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:58,804,690...58,853,155
Ensembl chr  X:58,804,691...58,853,265 		JBrowse link
G Zfy1 zinc finger protein 1, Y-linked enables IBA GO_REF:0000033 GO_Central GO_REF:0000033
chromatin loop anchoring activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctcf CCCTC-binding factor enables ISO
IEA		 (PMID:34856126)
GO_REF:0000107		 RGD
Ensembl		 PMID:34856126 GO_REF:0000107 NCBI chr19:33,521,726...33,571,124
Ensembl chr19:33,529,319...33,571,123 		JBrowse link
nucleosomal DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07053402.1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 3:99,990,743...99,991,003 JBrowse link
G AABR07053884.1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 3:126,570,653...126,570,904 JBrowse link
G ENSRNOG00000064141 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr15:7,467,152...7,470,303 JBrowse link
G ENSRNOG00000064384 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 8:6,857,829...6,858,796 JBrowse link
G ENSRNOG00000068549 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr15:74,620,797...74,621,228 JBrowse link
G H1f0 H1.0 linker histone enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:110,592,834...110,594,694
Ensembl chr 7:110,592,208...110,594,694 		JBrowse link
G H1f1 H1.1 linker histone, cluster member enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,366,268...41,367,011
Ensembl chr17:41,366,268...41,367,011 		JBrowse link
G H1f10 H1.10 linker histone enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:120,440,515...120,441,578
Ensembl chr 4:120,440,870...120,441,448 		JBrowse link
G H1f2 H1.2 linker histone, cluster member enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,391,106...41,392,597
Ensembl chr17:41,388,477...41,392,635 		JBrowse link
G H1f4 H1.4 linker histone, cluster member enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,486,574...41,487,355
Ensembl chr17:41,486,560...41,487,403 		JBrowse link
G H1f5 H1.5 linker histone, cluster member enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:42,726,132...42,727,162
Ensembl chr17:42,726,127...42,769,160 		JBrowse link
G H1f6 H1.6 linker histone, cluster member enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,427,365...41,428,109
Ensembl chr17:41,427,323...41,428,119 		JBrowse link
G H1f7 H1.7 linker histone enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:129,408,521...129,409,888
Ensembl chr 7:129,408,359...129,409,930 		JBrowse link
G H1f8 H1.8 linker histone enables ISS
ISO
IBA		 GO_REF:0000024
(PMID:22868987)
GO_REF:0000033		 CAFA
RGD
GO_Central		 PMID:22868987 GO_REF:0000024 GO_REF:0000033 NCBI chr 4:148,993,133...148,998,254
Ensembl chr 4:148,993,133...148,998,254 		JBrowse link
G H2az1 H2A.Z variant histone 1 enables ISO (PMID:19633671) RGD PMID:19633671 NCBI chr 2:226,355,668...226,357,984
Ensembl chr 2:226,355,708...226,358,485 		JBrowse link
G H3cl H3 clustered histone like enables ISO (PMID:27016736) RGD PMID:27016736 NCBI chr17:41,372,194...41,378,877 JBrowse link
G H3f3a H3.3 histone A enables ISO (PMID:19633671) RGD PMID:19633671 NCBI chr13:92,533,289...92,544,902
Ensembl chr13:92,533,298...92,544,908 		JBrowse link
G H3f3b H3.3 histone B enables ISO (PMID:19633671) RGD PMID:19633671 NCBI chr10:101,256,484...101,258,716
Ensembl chr10:101,256,480...101,258,709 		JBrowse link
G H4f3 H1.3 linker histone, cluster member enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,551,524...41,552,303
Ensembl chr17:41,529,667...41,552,334 		JBrowse link
G Hils1 histone linker H1 domain, spermatid-specific 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:79,913,525...79,914,321
Ensembl chr10:79,913,480...79,914,321 		JBrowse link
G Hmga2 high mobility group AT-hook 2 enables ISO
ISS		 (PMID:17078040)
GO_REF:0000024		 RGD
UniProt		 PMID:17078040 GO_REF:0000024 NCBI chr 7:55,877,145...55,998,813
Ensembl chr 7:55,880,112...55,994,784 		JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr11:35,422,328...35,428,247
Ensembl chr11:35,422,328...35,428,254 		JBrowse link
G Hmgn1-ps6 high mobility group nucleosome binding domain 1, pseudogene 6 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr14:60,030,310...60,030,603
Ensembl chr14:60,030,448...60,030,603
Ensembl chr14:60,030,448...60,030,603 		JBrowse link
G Hmgn1l1 high mobility group nucleosomal binding domain 1 like 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:38,604,856...38,606,026
Ensembl chr 4:38,605,721...38,606,011 		JBrowse link
G Hmgn2 high mobility group nucleosomal binding domain 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:146,192,126...146,195,580
Ensembl chr 5:146,192,126...146,195,521
Ensembl chr16:146,192,126...146,195,521 		JBrowse link
G Hmgn2-ps3 high mobility group nucleosomal binding domain 2, pseudogene 3 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:99,990,743...99,991,003
Ensembl chr 3:99,990,743...99,991,003 		JBrowse link
G Hmgn2-ps4 high mobility group nucleosomal binding domain 2, pseudogene 4 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:30,633,287...30,634,512
Ensembl chr16:30,622,845...30,634,512 		JBrowse link
G Hmgn2l2 high mobility group nucleosomal binding domain 2 like 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:57,618,690...57,618,983
Ensembl chr 2:57,618,690...57,618,953 		JBrowse link
G Hmgn2l3 high mobility group nucleosomal binding domain 2 like 3 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:83,520,046...83,520,312
Ensembl chr 7:83,520,046...83,520,312 		JBrowse link
G Hmgn3 high mobility group nucleosomal binding domain 3 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:84,022,493...84,059,329
Ensembl chr 8:84,022,495...84,062,976 		JBrowse link
G Hmgn5 high mobility group nucleosome binding domain 5 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:74,085,871...74,094,488
Ensembl chr  X:74,085,875...74,094,441 		JBrowse link
G Hmgn5b high mobility group nucleosome binding domain 5B enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:117,222,188...117,224,158
Ensembl chr 1:117,222,298...117,223,587 		JBrowse link
G LOC120093100 non-histone chromosomal protein HMG-14-like enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:44,016,858...44,017,148
Ensembl chr18:44,016,845...44,017,133 		JBrowse link
G Macroh2a1 macroH2A.1 histone enables ISO (PMID:20008927)
(PMID:18936163)		 RGD PMID:18936163 PMID:20008927 NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072 		JBrowse link
G Rcc1 regulator of chromosome condensation 1 enables ISO (PMID:17435751) RGD PMID:17435751 NCBI chr 5:144,526,025...144,544,445
Ensembl chr 5:144,526,025...144,544,577 		JBrowse link
G Vrk1 VRK serine/threonine kinase 1 enables ISO (PMID:35390161) RGD PMID:35390161 NCBI chr 6:124,914,770...124,981,508
Ensembl chr 6:124,914,855...124,981,436 		JBrowse link
promoter-enhancer loop anchoring activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahdc1 AT hook, DNA binding motif, containing 1 enables ISO (PMID:35585237) RGD PMID:35585237 NCBI chr 5:145,228,228...145,294,170
Ensembl chr 5:145,228,227...145,294,145 		JBrowse link
G Msl2 MSL complex subunit 2 enables ISO (PMID:38030723) RGD PMID:38030723 NCBI chr 8:101,676,605...101,702,818
Ensembl chr 8:101,676,765...101,763,833 		JBrowse link
G Pcbp2 poly(rC) binding protein 2 enables ISO (PMID:31361039) RGD PMID:31361039 NCBI chr 7:133,605,375...133,631,312
Ensembl chr 7:133,605,573...133,629,863 		JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 enables ISO (PMID:23637611) RGD PMID:23637611 NCBI chr 1:95,902,014...95,915,247
Ensembl chr 1:95,901,701...95,915,342 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 20626
    binding 17717
      chromatin binding 687
        chromatin DNA binding 130
          chromatin insulator sequence binding 5
          chromatin loop anchoring activity + 5
          nucleosomal DNA binding 36
Path 2
Term Annotations click to browse term
  molecular_function 20626
    binding 17717
      organic cyclic compound binding 6134
        nucleic acid binding 3844
          DNA binding 2276
            chromatin DNA binding 130
              chromatin insulator sequence binding 5
              chromatin loop anchoring activity + 5
              nucleosomal DNA binding 36
paths to the root