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DNA damage response pathway - Ontology Report - Rat Genome Database

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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:DNA damage response pathway
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Accession:PW:0001360 term browser browse the term
Definition:The response mechanism/pathways that assure the maintenance of genomic integrity. This involves detection of DNA damage, signaling and amplification of the signal leading to activation of effectors and resulting in repair of damage, cell cycle arrest or, if necessary, cell death. Such response mechanism/pathways may operate collectively with some of their components being shared.
Synonyms:related_synonym: DDR pathway


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altered DNA modification pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mbd4 methyl-CpG binding domain 4, DNA glycosylase ISO in silico assessment of loss of DNA-protein interactions and observed enhancement of DNA repair capacity (DRC) in the context of nucleotide excision repair (NER) pathway for SNP RGD PMID:24004570 RGD:9588971 NCBI chrNW_004955429:17,858,656...17,868,111
Ensembl chrNW_004955429:17,858,937...17,869,262
JBrowse link
altered mismatch repair pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlh1 mutL homolog 1 ISO RGD PMID:11900875 PMID:19078924 RGD:2306714 RGD:4143515 NCBI chrNW_004955421:3,890,291...3,936,892
Ensembl chrNW_004955421:3,890,306...3,936,526
JBrowse link
G Msh2 mutS homolog 2 ISO RGD PMID:11900875 RGD:2306714 NCBI chrNW_004955441:14,188,315...14,247,608
Ensembl chrNW_004955441:14,187,805...14,247,698
JBrowse link
G Msh6 mutS homolog 6 ISO RGD PMID:11900875 PMID:19078924 RGD:2306714 RGD:4143515 NCBI chrNW_004955441:14,451,207...14,471,316
Ensembl chrNW_004955441:14,451,307...14,471,227
JBrowse link
G Pms1 PMS1 homolog 1, mismatch repair system component ISO RGD PMID:11900875 RGD:2306714 NCBI chrNW_004955403:9,021,488...9,100,442
Ensembl chrNW_004955403:9,022,078...9,100,442
JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component ISO RGD PMID:11900875 RGD:2306714 NCBI chrNW_004955460:13,762,854...13,791,462 JBrowse link
altered nucleotide excision repair pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddb1 damage specific DNA binding protein 1 ISO RGD PMID:22824526 RGD:7246919 NCBI chrNW_004955511:6,209,777...6,233,594
Ensembl chrNW_004955511:6,209,777...6,233,594
JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit ISO RGD PMID:22824526 RGD:7246919 NCBI chrNW_004955555:2,355,005...2,369,599
Ensembl chrNW_004955555:2,355,005...2,369,599
JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit ISO RGD PMID:22824526 RGD:7246919 NCBI chrNW_004955459:3,210,936...3,238,401
Ensembl chrNW_004955459:3,210,479...3,242,576
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit ISO in silico assessment of alteration of DNA-protein, protein-protein interactions and observed reduction of DNA repair capacity in the context of nucleotide excision repair pathway for SNP RGD PMID:22824526 PMID:24004570 RGD:7246919 RGD:9588971 NCBI chrNW_004955442:4,833,453...4,861,201
Ensembl chrNW_004955442:4,831,721...4,861,122
JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease ISO RGD PMID:22824526 RGD:7246919 NCBI chrNW_004955404:8,294,506...8,321,505
Ensembl chrNW_004955404:8,294,346...8,321,112
JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor ISO RGD PMID:22824526 RGD:7246919 NCBI chrNW_004955556:745,175...812,215
Ensembl chrNW_004955556:748,231...813,133
JBrowse link
G Xpa XPA, DNA damage recognition and repair factor ISO RGD PMID:22824526 RGD:7246919 NCBI chrNW_004955419:27,751,042...27,774,917
Ensembl chrNW_004955419:27,751,043...27,774,917
JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor ISO RGD PMID:22824526 RGD:7246919 NCBI chrNW_004955429:16,935,901...16,968,285
Ensembl chrNW_004955429:16,935,901...16,955,845
JBrowse link
altered SWI/SNF family mediated chromatin remodeling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin like 6A ISO RGD PMID:23355908 RGD:8694154 NCBI chrNW_004955420:8,745,390...8,764,993
Ensembl chrNW_004955420:8,744,597...8,764,993
JBrowse link
G Arid1a AT-rich interaction domain 1A ISO RGD PMID:23355908 RGD:8694154 NCBI chrNW_004955452:6,068,631...6,120,759
Ensembl chrNW_004955452:6,068,631...6,120,759
JBrowse link
G Arid1b AT-rich interaction domain 1B ISO RGD PMID:23355908 RGD:8694154 NCBI chrNW_004955439:5,041,111...5,454,692
Ensembl chrNW_004955439:5,043,967...5,412,741
JBrowse link
G Pbrm1 polybromo 1 ISO RGD PMID:23355908 RGD:8694154 NCBI chrNW_004955430:2,536,086...2,671,094
Ensembl chrNW_004955430:2,536,086...2,670,617
JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 ISO RGD PMID:23355908 RGD:8694154 NCBI chrNW_004955495:2,021,671...2,105,155
Ensembl chrNW_004955495:2,021,566...2,105,397
JBrowse link
ataxia telangiectasia-mutated (ATM) signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase ISO RGD PMID:21533982 PMID:23532176 RGD:8661225 RGD:8661232 NCBI chrNW_004955412:10,422,753...10,531,406
Ensembl chrNW_004955412:10,426,135...10,530,545
JBrowse link
G Baz1b bromodomain adjacent to zinc finger domain 1B ISO RGD PMID:24002223 RGD:8661242 NCBI chrNW_004955456:14,185,091...14,242,391
Ensembl chrNW_004955456:14,185,107...14,240,688
JBrowse link
G Brca1 BRCA1 DNA repair associated ISO RGD PMID:24326623 RGD:8661237 NCBI chrNW_004955451:16,819,463...16,870,780
Ensembl chrNW_004955451:16,819,023...16,855,528
JBrowse link
G Brcc3 BRCA1/BRCA2-containing complex subunit 3 ISO RGD PMID:24002223 RGD:8661242 NCBI chrNW_004955594:551,407...613,772
Ensembl chrNW_004955594:554,081...613,661
JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 ISO RGD PMID:24002223 RGD:8661242 NCBI chrNW_004955444:8,336,071...8,655,041
Ensembl chrNW_004955444:8,495,530...8,655,100
JBrowse link
G Eya3 EYA transcriptional coactivator and phosphatase 3 ISO RGD PMID:24002223 RGD:8661242 NCBI chrNW_004955452:7,148,762...7,273,886
Ensembl chrNW_004955452:7,150,886...7,255,159
JBrowse link
G Kat5 lysine acetyltransferase 5 ISO RGD PMID:21533982 PMID:23532176 RGD:8661225 RGD:8661232 NCBI chrNW_004955422:19,557,498...19,565,044
Ensembl chrNW_004955422:19,557,498...19,565,036
JBrowse link
G Kdm4a lysine demethylase 4A ISO RGD PMID:24002223 PMID:24326623 RGD:8661237 RGD:8661242 NCBI chrNW_004955537:3,199,394...3,255,945
Ensembl chrNW_004955537:3,199,394...3,255,945
JBrowse link
G L3mbtl1 L3MBTL histone methyl-lysine binding protein 1 ISO RGD PMID:24002223 PMID:24326623 RGD:8661237 RGD:8661242 NCBI chrNW_004955445:13,621,007...13,645,809
Ensembl chrNW_004955445:13,621,791...13,645,799
JBrowse link
G LOC102025775 histone H2AX ISO RGD PMID:21533982 PMID:24002223 RGD:8661232 RGD:8661242 NCBI chrNW_004955412:20,203,173...20,204,714
Ensembl chrNW_004955412:20,203,772...20,204,203
JBrowse link
G Mdc1 mediator of DNA damage checkpoint 1 ISO RGD PMID:21533982 PMID:24002223 RGD:8661232 RGD:8661242 NCBI chrNW_004955583:688,288...722,393 JBrowse link
G Nbn nibrin ISO RGD PMID:21533982 RGD:8661232 NCBI chrNW_004955417:6,840,916...6,880,479
Ensembl chrNW_004955417:6,839,312...6,880,133
JBrowse link
G Otub1 OTU deubiquitinase, ubiquitin aldehyde binding 1 ISO RGD PMID:24002223 RGD:8661242 NCBI chrNW_004955422:21,047,184...21,055,596
Ensembl chrNW_004955422:21,047,184...21,055,616
JBrowse link
G Pias1 protein inhibitor of activated STAT 1 ISO RGD PMID:24002223 RGD:8661242 NCBI chrNW_004955450:7,896,741...7,991,045
Ensembl chrNW_004955450:7,896,741...7,991,027
JBrowse link
G Pias4 protein inhibitor of activated STAT 4 ISO RGD PMID:24002223 RGD:8661242 NCBI chrNW_004955495:4,760,576...4,791,422
Ensembl chrNW_004955495:4,761,862...4,791,490
JBrowse link
G Ppm1d protein phosphatase, Mg2+/Mn2+ dependent 1D ISO RGD PMID:21533982 PMID:24002223 RGD:8661232 RGD:8661242 NCBI chrNW_004955451:1,878,110...1,915,794
Ensembl chrNW_004955451:1,878,629...1,915,654
JBrowse link
G Ppp2ca protein phosphatase 2 catalytic subunit alpha ISO RGD PMID:21533982 PMID:24002223 RGD:8661232 RGD:8661242 NCBI chrNW_004955408:5,435,117...5,460,361
Ensembl chrNW_004955408:5,433,268...5,460,361
JBrowse link
G Ppp4c protein phosphatase 4 catalytic subunit ISO RGD PMID:24002223 RGD:8661242 NCBI chrNW_004955493:6,894,849...6,901,344
Ensembl chrNW_004955493:6,894,849...6,901,344
JBrowse link
G Ppp5c protein phosphatase 5 catalytic subunit ISO RGD PMID:21533982 RGD:8661232 NCBI chrNW_004955574:523,044...545,461
Ensembl chrNW_004955574:523,005...546,923
JBrowse link
G Ppp6c protein phosphatase 6 catalytic subunit ISO RGD PMID:24002223 RGD:8661242 NCBI chrNW_004955419:3,096,882...3,133,590
Ensembl chrNW_004955419:3,096,240...3,134,215
JBrowse link
G Psmd14 proteasome 26S subunit, non-ATPase 14 ISO RGD PMID:24002223 RGD:8661242 NCBI chrNW_004955449:12,306,026...12,400,908 JBrowse link
G Pwwp3a PWWP domain containing 3A, DNA repair factor ISO RGD PMID:24326623 RGD:8661237 NCBI chrNW_004955495:6,552,305...6,574,191
Ensembl chrNW_004955495:6,552,584...6,573,016
JBrowse link
G Rad50 RAD50 double strand break repair protein ISO RGD PMID:21533982 RGD:8661232 NCBI chrNW_004955408:3,953,801...4,035,494
Ensembl chrNW_004955408:3,953,800...4,035,494
JBrowse link
G Rbbp8 RB binding protein 8, endonuclease ISO RGD PMID:24326623 RGD:8661237 NCBI chrNW_004955402:11,245,857...11,331,872
Ensembl chrNW_004955402:11,245,819...11,335,367
JBrowse link
G Rif1 replication timing regulatory factor 1 ISO RGD PMID:24326623 RGD:8661237 NCBI chrNW_004955440:16,977,710...17,047,809
Ensembl chrNW_004955440:16,979,042...17,041,748
JBrowse link
G Rnf168 ring finger protein 168 ISO RGD PMID:21533982 PMID:24326623 RGD:8661232 RGD:8661237 NCBI chrNW_004955420:12,656,815...12,676,836
Ensembl chrNW_004955420:12,657,272...12,676,426
JBrowse link
G Rnf20 ring finger protein 20 ISO RGD PMID:23532176 RGD:8661225 NCBI chrNW_004955419:24,273,714...24,299,454
Ensembl chrNW_004955419:24,273,714...24,299,460
JBrowse link
G Rnf4 ring finger protein 4 ISO RGD PMID:24002223 RGD:8661242 NCBI chrNW_004955514:1,501,943...1,525,689
Ensembl chrNW_004955514:1,511,062...1,523,714
JBrowse link
G Rnf40 ring finger protein 40 ISO RGD PMID:23532176 RGD:8661225 NCBI chrNW_004955493:7,627,189...7,640,711
Ensembl chrNW_004955493:7,627,189...7,640,711
JBrowse link
G Rnf8 ring finger protein 8 ISO RGD PMID:21533982 PMID:24326623 RGD:8661232 RGD:8661237 NCBI chrNW_004955437:5,807,592...5,832,213
Ensembl chrNW_004955437:5,809,082...5,832,057
JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 ISO RGD PMID:24326623 RGD:8661237 NCBI chrNW_004955416:9,962,736...10,035,433
Ensembl chrNW_004955416:9,962,897...10,035,278
JBrowse link
G Trip12 thyroid hormone receptor interactor 12 ISO RGD PMID:24002223 RGD:8661242 NCBI chrNW_004955453:5,132,776...5,272,250
Ensembl chrNW_004955453:5,134,016...5,271,399
JBrowse link
G Ube2n ubiquitin conjugating enzyme E2 N ISO RGD PMID:21533982 PMID:24326623 RGD:8661232 RGD:8661237 NCBI chrNW_004955405:30,240,402...30,278,362
Ensembl chrNW_004955405:30,240,408...30,278,360
JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 ISO RGD PMID:24002223 RGD:8661242 NCBI chrNW_004955417:26,997,572...27,085,511
Ensembl chrNW_004955417:26,998,513...27,083,005
JBrowse link
G Usp16 ubiquitin specific peptidase 16 ISO RGD PMID:24002223 RGD:8661242 NCBI chrNW_004955407:28,375,246...28,413,279 JBrowse link
G Usp3 ubiquitin specific peptidase 3 ISO RGD PMID:24002223 RGD:8661242 NCBI chrNW_004955450:11,729,433...11,802,462
Ensembl chrNW_004955450:11,727,104...11,802,462
JBrowse link
G Usp44 ubiquitin specific peptidase 44 ISO RGD PMID:24002223 RGD:8661242 NCBI chrNW_004955405:31,977,045...32,006,733
Ensembl chrNW_004955405:31,977,602...32,006,810
JBrowse link
G Vcp valosin containing protein ISO RGD PMID:24002223 PMID:24326623 RGD:8661237 RGD:8661242 NCBI chrNW_004955472:1,111,649...1,124,076
Ensembl chrNW_004955472:1,107,164...1,124,076
JBrowse link
base excision repair pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ogg1 8-oxoguanine DNA glycosylase ISO RGD PMID:16221808 RGD:1578408 NCBI chrNW_004955561:1,277,362...1,282,949
Ensembl chrNW_004955561:1,277,365...1,282,793
JBrowse link
G Xrcc1 X-ray repair cross complementing 1 ISO RGD PMID:16221808 RGD:1578408 NCBI chrNW_004955555:1,293,416...1,315,839
Ensembl chrNW_004955555:1,293,416...1,315,839
JBrowse link
CHD family mediated chromatin remodeling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd3 chromodomain helicase DNA binding protein 3 ISO RGD PMID:24880148 RGD:9585661 NCBI chrNW_004955467:9,024,112...9,050,062
Ensembl chrNW_004955467:9,029,265...9,050,718
JBrowse link
G Chd4 chromodomain helicase DNA binding protein 4 ISO RGD PMID:24880148 RGD:9585661 NCBI chrNW_004955413:4,191,619...4,228,225
Ensembl chrNW_004955413:4,191,619...4,228,225
JBrowse link
G Chd5 chromodomain helicase DNA binding protein 5 ISO RGD PMID:24880148 RGD:9585661 NCBI chrNW_004955486:6,320,380...6,369,020
Ensembl chrNW_004955486:6,320,380...6,369,065
JBrowse link
G Gatad2a GATA zinc finger domain containing 2A ISO RGD PMID:24880148 RGD:9585661 NCBI chrNW_004955524:2,439,594...2,506,539
Ensembl chrNW_004955524:2,439,594...2,506,538
JBrowse link
G Gatad2b GATA zinc finger domain containing 2B ISO RGD PMID:24880148 RGD:9585661 NCBI chrNW_004955545:424,997...519,031
Ensembl chrNW_004955545:430,245...517,790
JBrowse link
G Hdac1 histone deacetylase 1 ISO RGD PMID:24880148 RGD:9585661 NCBI chrNW_004955452:10,636,366...10,668,873
Ensembl chrNW_004955452:10,636,366...10,670,864
JBrowse link
G Hdac2 histone deacetylase 2 ISO RGD PMID:24880148 RGD:9585661 NCBI chrNW_004955526:2,739,099...2,759,640
Ensembl chrNW_004955526:2,728,377...2,759,707
JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 ISO RGD PMID:24880148 RGD:9585661 NCBI chrNW_004955402:38,761,668...38,829,830
Ensembl chrNW_004955402:38,767,419...38,830,204
JBrowse link
G Mbd3 methyl-CpG binding domain protein 3 ISO RGD PMID:24880148 RGD:9585661 NCBI chrNW_004955495:6,385,449...6,388,911
Ensembl chrNW_004955495:6,336,367...6,389,056
JBrowse link
G Mta1 metastasis associated 1 ISO RGD PMID:24880148 RGD:9585661 NCBI chrNW_004955538:3,630,383...3,671,005
Ensembl chrNW_004955538:3,634,341...3,671,005
JBrowse link
G Mta2 metastasis associated 1 family member 2 ISO RGD PMID:24880148 RGD:9585661 NCBI chrNW_004955599:587,369...595,582
Ensembl chrNW_004955599:587,425...595,060
JBrowse link
G Mta3 metastasis associated 1 family member 3 ISO RGD PMID:24880148 RGD:9585661 NCBI chrNW_004955441:9,965,727...10,108,467
Ensembl chrNW_004955441:9,965,500...10,108,467
JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor ISO RGD PMID:24880148 RGD:9585661 NCBI chrNW_004955452:10,955,399...10,975,036
Ensembl chrNW_004955452:10,955,399...10,975,036
JBrowse link
G Rbbp7 RB binding protein 7, chromatin remodeling factor ISO RGD PMID:24880148 RGD:9585661 NCBI chrNW_004955519:1,460,199...1,482,699 JBrowse link
DNA modification pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cxxc1 CXXC finger protein 1 ISO RGD PMID:23697932 RGD:9479164 NCBI chrNW_004955402:35,335,520...35,340,891
Ensembl chrNW_004955402:35,335,520...35,340,890
JBrowse link
G Dnmt1 DNA methyltransferase 1 ISO RGD PMID:22770212 PMID:24825349 RGD:8695943 RGD:8695944 NCBI chrNW_004955495:1,465,529...1,505,379
Ensembl chrNW_004955495:1,465,480...1,505,462
JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha ISO RGD PMID:22770212 PMID:24825349 RGD:8695943 RGD:8695944 NCBI chrNW_004955469:7,264,431...7,367,059
Ensembl chrNW_004955469:7,269,952...7,367,059
JBrowse link
G Dnmt3b DNA methyltransferase 3 beta ISO RGD PMID:22770212 PMID:24825349 RGD:8695943 RGD:8695944 NCBI chrNW_004955422:28,380,595...28,427,012
Ensembl chrNW_004955422:28,380,591...28,421,301
JBrowse link
G Ebf1 EBF transcription factor 1 ISO RGD PMID:24825349 RGD:8695944 NCBI chrNW_004955408:12,735,893...13,121,700
Ensembl chrNW_004955408:12,739,083...13,121,699
JBrowse link
G Kdm2a lysine demethylase 2A ISO RGD PMID:23697932 RGD:9479164 NCBI chrNW_004955422:18,201,243...18,308,163
Ensembl chrNW_004955422:18,200,758...18,308,163
JBrowse link
G Kdm2b lysine demethylase 2B ISO RGD PMID:23697932 RGD:9479164 NCBI chrNW_004955482:6,774,021...6,885,113
Ensembl chrNW_004955482:6,774,059...6,887,171
JBrowse link
G Kmt2a lysine methyltransferase 2A ISO RGD PMID:23697932 RGD:9479164 NCBI chrNW_004955412:19,586,435...19,670,149
Ensembl chrNW_004955412:19,586,141...19,665,527
JBrowse link
G Kmt2c lysine methyltransferase 2C ISO RGD PMID:23697932 RGD:9479164 NCBI chrNW_004955491:6,245,408...6,420,535
Ensembl chrNW_004955491:6,247,249...6,402,470
JBrowse link
G Mbd1 methyl-CpG binding domain protein 1 ISO RGD PMID:23324617 RGD:8695954 NCBI chrNW_004955402:35,320,755...35,334,751
Ensembl chrNW_004955402:35,319,810...35,334,678
JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 ISO RGD PMID:23324617 RGD:8695954 NCBI chrNW_004955402:38,761,668...38,829,830
Ensembl chrNW_004955402:38,767,419...38,830,204
JBrowse link
G Mbd4 methyl-CpG binding domain 4, DNA glycosylase ISO RGD PMID:23324617 RGD:8695954 NCBI chrNW_004955429:17,858,656...17,868,111
Ensembl chrNW_004955429:17,858,937...17,869,262
JBrowse link
G Mecp2 methyl-CpG binding protein 2 ISO RGD PMID:23324617 RGD:8695954 NCBI chrNW_004955580:674,014...737,586
Ensembl chrNW_004955580:679,109...735,288
JBrowse link
G Nanog Nanog homeobox ISO RGD PMID:24825349 RGD:8695944 NCBI chrNW_004955413:6,561,323...6,565,770 JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase ISO RGD PMID:24825349 RGD:8695944 NCBI chrNW_004955475:11,062,258...11,112,252
Ensembl chrNW_004955475:11,062,076...11,114,169
JBrowse link
G Pparg peroxisome proliferator activated receptor gamma ISO RGD PMID:24825349 RGD:8695944 NCBI chrNW_004955429:14,814,690...14,936,869
Ensembl chrNW_004955429:14,873,908...14,937,387
JBrowse link
G Prdm14 PR/SET domain 14 ISO RGD PMID:24825349 RGD:8695944 NCBI chrNW_004955444:9,606,310...9,626,772
Ensembl chrNW_004955444:9,612,059...9,626,817
JBrowse link
G Sin3a SIN3 transcription regulator family member A ISO RGD PMID:24825349 RGD:8695944 NCBI chrNW_004955450:2,804,551...2,870,450
Ensembl chrNW_004955450:2,808,130...2,870,450
JBrowse link
G Spi1 Spi-1 proto-oncogene ISO RGD PMID:24825349 RGD:8695944 NCBI chrNW_004955422:873,735...886,560
Ensembl chrNW_004955422:873,735...886,560
JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 ISO RGD PMID:22770212 PMID:24825349 RGD:8695943 RGD:8695944 NCBI chrNW_004955425:20,767,406...20,857,165 JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 ISO RGD PMID:22770212 PMID:24825349 RGD:8695943 RGD:8695944 NCBI chrNW_004955496:3,885,684...3,963,056
Ensembl chrNW_004955496:3,885,035...3,926,106
JBrowse link
G Tet3 tet methylcytosine dioxygenase 3 ISO RGD PMID:22770212 PMID:23697932 PMID:24825349 RGD:8695943 RGD:8695944 RGD:9479164 NCBI chrNW_004955424:11,612,124...11,722,130
Ensembl chrNW_004955424:11,617,993...11,714,203
JBrowse link
G Uhrf1 ubiquitin like with PHD and ring finger domains 1 ISO RGD PMID:23324617 RGD:8695954 NCBI chrNW_004955495:4,153,898...4,154,611 JBrowse link
G Uhrf2 ubiquitin like with PHD and ring finger domains 2 ISO RGD PMID:23324617 RGD:8695954 NCBI chrNW_004955434:10,337,871...10,413,290
Ensembl chrNW_004955434:10,337,564...10,413,290
JBrowse link
G Zbtb33 zinc finger and BTB domain containing 33 ISO RGD PMID:23324617 RGD:8695954 NCBI chrNW_004955572:1,628,263...1,636,299
Ensembl chrNW_004955572:1,628,263...1,635,828
JBrowse link
G Zbtb38 zinc finger and BTB domain containing 38 ISO RGD PMID:23324617 RGD:8695954 NCBI chrNW_004955508:4,260,716...4,297,435
Ensembl chrNW_004955508:4,260,716...4,297,435
JBrowse link
G Zbtb4 zinc finger and BTB domain containing 4 ISO RGD PMID:23324617 RGD:8695954 NCBI chrNW_004955467:9,452,423...9,470,494
Ensembl chrNW_004955467:9,453,493...9,470,482
JBrowse link
G Zfp57 ZFP57 zinc finger protein ISO RGD PMID:23324617 RGD:8695954 NCBI chrNW_004955583:151,338...154,827 JBrowse link
histone modification pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aebp2 AE binding protein 2 ISO RGD PMID:24148750 RGD:9479059 NCBI chrNW_004955413:15,514,247...15,561,233
Ensembl chrNW_004955413:15,495,073...15,561,227
JBrowse link
G Aplf aprataxin and PNKP like factor ISO RGD PMID:23288364 RGD:9068945 NCBI chrNW_004955424:16,338,546...16,449,074
Ensembl chrNW_004955424:16,336,228...16,448,766
JBrowse link
G Asf1a anti-silencing function 1A histone chaperone ISO RGD PMID:23288364 RGD:9068945 NCBI chrNW_004955436:1,635,397...1,640,989
Ensembl chrNW_004955436:1,635,399...1,645,075
JBrowse link
G Asf1b anti-silencing function 1B histone chaperone ISO RGD PMID:23288364 RGD:9068945 NCBI chrNW_004955415:32,818,592...32,828,651
Ensembl chrNW_004955415:32,817,547...32,828,651
JBrowse link
G Ash1l ASH1 like histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955545:1,778,905...1,950,656
Ensembl chrNW_004955545:1,778,905...1,923,104
JBrowse link
G Ash2l ASH2 like, histone lysine methyltransferase complex subunit ISO RGD PMID:22663077 RGD:9479053 NCBI chrNW_004955463:13,731,651...13,757,475
Ensembl chrNW_004955463:13,731,506...13,761,684
JBrowse link
G Bap1 BRCA1 associated deubiquitinase 1 ISO RGD PMID:24647359 RGD:9479061 NCBI chrNW_004955430:2,391,970...2,400,645
Ensembl chrNW_004955430:2,390,524...2,400,645
JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chrNW_004955429:6,548,586...6,553,730
Ensembl chrNW_004955429:6,547,731...6,558,105
JBrowse link
G Bptf bromodomain PHD finger transcription factor ISO RGD PMID:23642229 PMID:24686119 RGD:9479074 RGD:9479075 NCBI chrNW_004955478:6,990,816...7,088,751
Ensembl chrNW_004955478:6,990,833...7,086,721
JBrowse link
G Brcc3 BRCA1/BRCA2-containing complex subunit 3 ISO RGD PMID:24647359 RGD:9479061 NCBI chrNW_004955594:551,407...613,772
Ensembl chrNW_004955594:554,081...613,661
JBrowse link
G Brd1 bromodomain containing 1 ISO RGD PMID:24686119 RGD:9479075 NCBI chrNW_004955413:32,935,827...32,973,820
Ensembl chrNW_004955413:32,935,827...32,973,804
JBrowse link
G Brd2 bromodomain containing 2 ISO RGD PMID:24686119 RGD:9479075 NCBI chrNW_004955437:1,584,890...1,592,486
Ensembl chrNW_004955437:1,584,479...1,592,826
JBrowse link
G Brd3 bromodomain containing 3 ISO RGD PMID:24686119 RGD:9479075 NCBI chrNW_004955513:3,145,267...3,164,791
Ensembl chrNW_004955513:3,145,288...3,174,370
JBrowse link
G Brd4 bromodomain containing 4 ISO RGD PMID:24686119 RGD:9479075 NCBI chrNW_004955495:7,959,033...7,989,216
Ensembl chrNW_004955495:7,957,510...7,988,498
JBrowse link
G Brd7 bromodomain containing 7 ISO RGD PMID:24686119 RGD:9479075 NCBI chrNW_004955433:8,425,976...8,462,431
Ensembl chrNW_004955433:8,424,949...8,461,802
JBrowse link
G Brdt bromodomain testis associated ISO RGD PMID:24686119 RGD:9479075 NCBI chrNW_004955423:2,434,146...2,498,523
Ensembl chrNW_004955423:2,431,192...2,494,906
JBrowse link
G Brf1 BRF1 general transcription factor IIIB subunit ISO RGD PMID:23642229 RGD:9479074 NCBI chrNW_004955538:3,469,322...3,544,704
Ensembl chrNW_004955538:3,470,249...3,544,704
JBrowse link
G Carm1 coactivator associated arginine methyltransferase 1 ISO RGD PMID:24583552 RGD:9479047 NCBI chrNW_004955495:1,983,599...2,002,174
Ensembl chrNW_004955495:1,983,599...2,002,174
JBrowse link
G Cbx2 chromobox 2 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chrNW_004955506:3,045,395...3,053,003
Ensembl chrNW_004955506:3,046,607...3,053,001
JBrowse link
G Cbx4 chromobox 4 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chrNW_004955506:2,998,241...3,002,788
Ensembl chrNW_004955506:2,998,237...3,002,788
JBrowse link
G Cbx5 chromobox 5 ISO RGD PMID:23642229 RGD:9479074 NCBI chrNW_004955458:1,486,951...1,529,649
Ensembl chrNW_004955458:1,486,951...1,505,653
JBrowse link
G Cbx6 chromobox 6 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chrNW_004955413:24,955,721...24,966,015
Ensembl chrNW_004955413:24,955,721...24,966,973
JBrowse link
G Cbx7 chromobox 7 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chrNW_004955413:25,079,627...25,100,039
Ensembl chrNW_004955413:25,086,186...25,100,039
JBrowse link
G Cbx8 chromobox 8 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chrNW_004955506:3,035,510...3,038,204
Ensembl chrNW_004955506:3,035,621...3,040,354
JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A ISO RGD PMID:23288364 RGD:9068945 NCBI chrNW_004955495:4,467,317...4,499,419
Ensembl chrNW_004955495:4,468,202...4,499,171
JBrowse link
G Chaf1b chromatin assembly factor 1 subunit B ISO RGD PMID:23288364 RGD:9068945 NCBI chrNW_004955407:35,601,992...35,618,287
Ensembl chrNW_004955407:35,602,819...35,617,917
JBrowse link
G Chd1 chromodomain helicase DNA binding protein 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chrNW_004955418:14,200,618...14,268,361
Ensembl chrNW_004955418:14,200,617...14,268,361
JBrowse link
G Crebbp CREB binding protein ISO RGD PMID:21151613 PMID:24686119 RGD:9104959 RGD:9479075 NCBI chrNW_004955442:13,559,496...13,691,913
Ensembl chrNW_004955442:13,559,496...13,692,004
JBrowse link
G Cxxc1 CXXC finger protein 1 ISO RGD PMID:22663077 RGD:9479053 NCBI chrNW_004955402:35,335,520...35,340,891
Ensembl chrNW_004955402:35,335,520...35,340,890
JBrowse link
G Daxx death domain associated protein ISO RGD PMID:23288364 RGD:9068945 NCBI chrNW_004955437:1,869,692...1,874,041
Ensembl chrNW_004955437:1,869,572...1,873,050
JBrowse link
G Dot1l DOT1 like histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955495:5,907,486...5,958,241
Ensembl chrNW_004955495:5,909,880...5,959,027
JBrowse link
G Dpf3 double PHD fingers 3 ISO RGD PMID:23642229 RGD:9479074 NCBI chrNW_004955523:2,423,035...2,718,930
Ensembl chrNW_004955523:2,454,908...2,709,262
JBrowse link
G Dpy30 dpy-30 histone methyltransferase complex regulatory subunit ISO RGD PMID:22663077 RGD:9479053 NCBI chrNW_004955441:440,047...450,906
Ensembl chrNW_004955441:437,564...450,906
JBrowse link
G Ehmt1 euchromatic histone lysine methyltransferase 1 ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955513:5,491,446...5,642,559
Ensembl chrNW_004955513:5,547,313...5,641,499
JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 ISO RGD PMID:23200123 PMID:23642229 RGD:7242632 RGD:9479074 NCBI chrNW_004955437:396,736...411,144
Ensembl chrNW_004955437:396,742...411,144
JBrowse link
G Ep300 E1A binding protein p300 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004955413:26,647,553...26,727,875
Ensembl chrNW_004955413:26,648,339...26,727,933
JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955491:4,215,353...4,292,229
Ensembl chrNW_004955491:4,215,298...4,292,235
JBrowse link
G H3f3a H3 histone, family 3A ISO RGD PMID:24614311 RGD:9075965 NCBI chrNW_004955489:269,900...278,398
Ensembl chrNW_004955489:269,900...278,398
JBrowse link
G H3f3b H3 histone, family 3B ISO RGD PMID:24614311 RGD:9075965 NCBI chrNW_004955506:6,475,336...6,478,781
Ensembl chrNW_004955506:6,474,727...6,482,244
JBrowse link
G Hat1 histone acetyltransferase 1 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004955449:3,026,194...3,070,448
Ensembl chrNW_004955449:3,025,461...3,066,919
JBrowse link
G Hcfc1 host cell factor C1 ISO RGD PMID:22663077 RGD:9479053 NCBI chrNW_004955580:616,477...636,849
Ensembl chrNW_004955580:616,477...635,597
JBrowse link
G Hdac1 histone deacetylase 1 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004955452:10,636,366...10,668,873
Ensembl chrNW_004955452:10,636,366...10,670,864
JBrowse link
G Hdac10 histone deacetylase 10 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004955413:33,272,600...33,277,893
Ensembl chrNW_004955413:33,272,714...33,277,686
JBrowse link
G Hdac11 histone deacetylase 11 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004955429:12,890,939...12,907,749
Ensembl chrNW_004955429:12,890,879...12,907,749
JBrowse link
G Hdac2 histone deacetylase 2 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004955526:2,739,099...2,759,640
Ensembl chrNW_004955526:2,728,377...2,759,707
JBrowse link
G Hdac3 histone deacetylase 3 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004955415:12,138,520...12,154,234
Ensembl chrNW_004955415:12,138,870...12,154,234
JBrowse link
G Hdac4 histone deacetylase 4 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004955542:1,629,691...1,886,160
Ensembl chrNW_004955542:1,629,691...1,886,210
JBrowse link
G Hdac5 histone deacetylase 5 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004955451:17,223,217...17,246,451
Ensembl chrNW_004955451:17,223,287...17,244,051
JBrowse link
G Hdac6 histone deacetylase 6 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004955543:348,314...378,391
Ensembl chrNW_004955543:348,019...378,071
JBrowse link
G Hdac7 histone deacetylase 7 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004955500:6,692,656...6,707,453
Ensembl chrNW_004955500:6,693,668...6,709,864
JBrowse link
G Hdac8 histone deacetylase 8 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004955475:11,748,502...12,012,884
Ensembl chrNW_004955475:11,748,365...12,013,241
JBrowse link
G Hdac9 histone deacetylase 9 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004955410:21,046,312...21,932,029
Ensembl chrNW_004955410:21,245,562...21,932,023
JBrowse link
G Hjurp Holliday junction recognition protein ISO RGD PMID:23288364 RGD:9068945 NCBI chrNW_004955453:2,323,018...2,335,090
Ensembl chrNW_004955453:2,322,446...2,334,588
JBrowse link
G Ing2 inhibitor of growth family member 2 ISO RGD PMID:23642229 RGD:9479074 NCBI chrNW_004955403:25,325,600...25,331,175
Ensembl chrNW_004955403:25,325,600...25,331,175
JBrowse link
G Jmjd1c jumonji domain containing 1C ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955425:16,343,314...16,552,552
Ensembl chrNW_004955425:16,344,141...16,493,527
JBrowse link
G Kat2a lysine acetyltransferase 2A ISO RGD PMID:21151613 PMID:23642229 RGD:9104959 RGD:9479074 NCBI chrNW_004955451:16,192,228...16,197,103
Ensembl chrNW_004955451:16,191,186...16,197,574
JBrowse link
G Kat2b lysine acetyltransferase 2B ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004955430:12,109,493...12,196,102
Ensembl chrNW_004955430:12,128,069...12,198,117
JBrowse link
G Kat5 lysine acetyltransferase 5 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004955422:19,557,498...19,565,044
Ensembl chrNW_004955422:19,557,498...19,565,036
JBrowse link
G Kat6a lysine acetyltransferase 6A ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004955536:900,198...1,015,520
Ensembl chrNW_004955536:900,198...1,015,520
JBrowse link
G Kat7 lysine acetyltransferase 7 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004955451:11,770,201...11,802,992
Ensembl chrNW_004955451:11,770,201...11,802,992
JBrowse link
G Kdm1a lysine demethylase 1A ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955452:3,044,042...3,104,650
Ensembl chrNW_004955452:3,044,264...3,104,418
JBrowse link
G Kdm1b lysine demethylase 1B ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955483:8,000,862...8,052,486
Ensembl chrNW_004955483:8,002,577...8,052,486
JBrowse link
G Kdm2a lysine demethylase 2A ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955422:18,201,243...18,308,163
Ensembl chrNW_004955422:18,200,758...18,308,163
JBrowse link
G Kdm2b lysine demethylase 2B ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955482:6,774,021...6,885,113
Ensembl chrNW_004955482:6,774,059...6,887,171
JBrowse link
G Kdm3a lysine demethylase 3A ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955424:1,164,384...1,218,607
Ensembl chrNW_004955424:1,171,827...1,218,607
JBrowse link
G Kdm3b lysine demethylase 3B ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955418:2,026,254...2,098,223
Ensembl chrNW_004955418:2,026,254...2,098,223
JBrowse link
G Kdm4a lysine demethylase 4A ISO RGD PMID:23200123 PMID:23642229 PMID:24035451 RGD:7242632 RGD:9479074 RGD:9479148 NCBI chrNW_004955537:3,199,394...3,255,945
Ensembl chrNW_004955537:3,199,394...3,255,945
JBrowse link
G Kdm4b lysine demethylase 4B ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955495:4,019,066...4,101,577
Ensembl chrNW_004955495:4,018,770...4,114,604
JBrowse link
G Kdm4c lysine demethylase 4C ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955434:10,646,524...11,000,589
Ensembl chrNW_004955434:10,685,704...11,000,644
JBrowse link
G Kdm4d lysine demethylase 4D ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955605:7,585...32,650
Ensembl chrNW_004955605:8,977...10,539
JBrowse link
G Kdm5a lysine demethylase 5A ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955454:6,774,308...6,865,047
Ensembl chrNW_004955454:6,774,476...6,865,033
JBrowse link
G Kdm5b lysine demethylase 5B ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955406:38,755,220...38,823,094
Ensembl chrNW_004955406:38,755,220...38,823,088
JBrowse link
G Kdm5c lysine demethylase 5C ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955475:243,666...278,064
Ensembl chrNW_004955475:243,666...278,627
JBrowse link
G Kdm6a lysine demethylase 6A ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chrNW_004955516:3,151,350...3,346,832
Ensembl chrNW_004955516:3,149,948...3,346,832
JBrowse link
G Kdm6b lysine demethylase 6B ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955467:9,085,239...9,106,658
Ensembl chrNW_004955467:9,086,204...9,094,404
JBrowse link
G Kdm7a lysine demethylase 7A ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955494:3,018,395...3,110,528
Ensembl chrNW_004955494:3,030,133...3,104,215
JBrowse link
G Kdm8 lysine demethylase 8 ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955493:5,437,344...5,462,849
Ensembl chrNW_004955493:5,437,090...5,462,294
JBrowse link
G Kmt2a lysine methyltransferase 2A ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chrNW_004955412:19,586,435...19,670,149
Ensembl chrNW_004955412:19,586,141...19,665,527
JBrowse link
G Kmt2b lysine methyltransferase 2B ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chrNW_004955468:2,813,183...2,834,326
Ensembl chrNW_004955468:2,813,496...2,834,326
JBrowse link
G Kmt2c lysine methyltransferase 2C ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chrNW_004955491:6,245,408...6,420,535
Ensembl chrNW_004955491:6,247,249...6,402,470
JBrowse link
G Kmt2d lysine methyltransferase 2D ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chrNW_004955500:7,850,782...7,891,703
Ensembl chrNW_004955500:7,853,292...7,886,067
JBrowse link
G Kmt2e lysine methyltransferase 2E (inactive) ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955410:9,714,587...9,808,021 JBrowse link
G Kmt5a lysine methyltransferase 5A ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955482:5,488,151...5,500,764
Ensembl chrNW_004955482:5,485,649...5,501,636
JBrowse link
G Kmt5b lysine methyltransferase 5B ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955422:17,626,606...17,684,890
Ensembl chrNW_004955422:17,647,530...17,682,132
JBrowse link
G Kmt5c lysine methyltransferase 5C ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955567:895,334...901,240
Ensembl chrNW_004955567:894,608...900,578
JBrowse link
G L3mbtl1 L3MBTL histone methyl-lysine binding protein 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chrNW_004955445:13,621,007...13,645,809
Ensembl chrNW_004955445:13,621,791...13,645,799
JBrowse link
G Lbr lamin B receptor ISO RGD PMID:24035451 RGD:9479148 NCBI chrNW_004955520:401,733...418,279 JBrowse link
G LOC102008188 core histone macro-H2A.1 ISO RGD PMID:24696452 RGD:9074213 NCBI chrNW_004955408:30,497,531...30,550,095
Ensembl chrNW_004955408:30,497,531...30,550,118
JBrowse link
G LOC102009660 protein HIRA ISO RGD PMID:23288364 RGD:9068945 NCBI chrNW_004955442:18,581,370...18,673,590
Ensembl chrNW_004955442:18,581,370...18,673,761
JBrowse link
G LOC102017503 core histone macro-H2A.2 ISO RGD PMID:24696452 RGD:9074213 NCBI chrNW_004955437:21,126,581...21,186,308
Ensembl chrNW_004955437:21,126,006...21,186,797
JBrowse link
G LOC102021365 histone H2A.Z ISO RGD PMID:24696452 RGD:9074213 NCBI chrNW_004955496:7,733,910...7,735,525
Ensembl chrNW_004955496:7,733,918...7,735,525
JBrowse link
G LOC102025775 histone H2AX ISO RGD PMID:24614311 RGD:9075965 NCBI chrNW_004955412:20,203,173...20,204,714
Ensembl chrNW_004955412:20,203,772...20,204,203
JBrowse link
G Mcph1 microcephalin 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chrNW_004955403:54,143,454...54,273,201 JBrowse link
G Mdc1 mediator of DNA damage checkpoint 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chrNW_004955583:688,288...722,393 JBrowse link
G Men1 menin 1 ISO RGD PMID:22663077 RGD:9479053 NCBI chrNW_004955422:20,356,491...20,363,374
Ensembl chrNW_004955422:20,356,491...20,363,575
JBrowse link
G Mysm1 Myb like, SWIRM and MPN domains 1 ISO RGD PMID:24647359 RGD:9479061 NCBI chrNW_004955464:1,185,184...1,226,709
Ensembl chrNW_004955464:1,185,174...1,220,848
JBrowse link
G Nap1l1 nucleosome assembly protein 1 like 1 ISO RGD PMID:23288364 RGD:9068945 NCBI chrNW_004955405:15,332,696...15,365,181
Ensembl chrNW_004955405:15,330,328...15,365,208
JBrowse link
G Nasp nuclear autoantigenic sperm protein ISO RGD PMID:23288364 RGD:9068945 NCBI chrNW_004955464:12,667,050...12,697,021
Ensembl chrNW_004955464:12,667,050...12,697,769
JBrowse link
G Ncoa6 nuclear receptor coactivator 6 ISO RGD PMID:22663077 RGD:9479053 NCBI chrNW_004955422:26,564,535...26,639,516
Ensembl chrNW_004955422:26,564,037...26,632,675
JBrowse link
G Nsd1 nuclear receptor binding SET domain protein 1 ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955408:29,416,393...29,547,444
Ensembl chrNW_004955408:29,413,595...29,542,768
JBrowse link
G Nsd3 nuclear receptor binding SET domain protein 3 ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955463:13,864,294...13,985,995
Ensembl chrNW_004955463:13,869,610...13,946,830
JBrowse link
G Orc1 origin recognition complex subunit 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chrNW_004955464:6,761,046...6,787,144
Ensembl chrNW_004955464:6,764,992...6,787,066
JBrowse link
G Pagr1 PAXIP1 associated glutamate rich protein 1 ISO RGD PMID:22663077 RGD:9479053 NCBI chrNW_004955493:7,142,048...7,144,836
Ensembl chrNW_004955493:7,142,272...7,144,389
JBrowse link
G Paxip1 PAX interacting protein 1 ISO RGD PMID:22663077 RGD:9479053 NCBI chrNW_004955491:8,177,422...8,219,764
Ensembl chrNW_004955491:8,177,422...8,219,766
JBrowse link
G Pbrm1 polybromo 1 ISO RGD PMID:24686119 RGD:9479075 NCBI chrNW_004955430:2,536,086...2,671,094
Ensembl chrNW_004955430:2,536,086...2,670,617
JBrowse link
G Pcgf1 polycomb group ring finger 1 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chrNW_004955424:11,282,562...11,284,970
Ensembl chrNW_004955424:11,282,091...11,286,753
JBrowse link
G Pcgf2 polycomb group ring finger 2 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chrNW_004955451:13,817,559...13,822,342
Ensembl chrNW_004955451:13,817,559...13,832,653
JBrowse link
G Pcgf3 polycomb group ring finger 3 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chrNW_004955514:307,331...350,039
Ensembl chrNW_004955514:307,332...350,039
JBrowse link
G Pcgf5 polycomb group ring finger 5 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chrNW_004955425:1,913,711...1,980,800
Ensembl chrNW_004955425:1,919,228...1,979,874
JBrowse link
G Pcgf6 polycomb group ring finger 6 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chrNW_004955485:7,196,626...7,228,918
Ensembl chrNW_004955485:7,196,626...7,227,536
JBrowse link
G Phc1 polyhomeotic homolog 1 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chrNW_004955413:6,156,934...6,176,460 JBrowse link
G Phc2 polyhomeotic homolog 2 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chrNW_004955452:11,490,336...11,538,618
Ensembl chrNW_004955452:11,491,573...11,538,618
JBrowse link
G Phc3 polyhomeotic homolog 3 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chrNW_004955420:329,215...403,191
Ensembl chrNW_004955420:329,215...403,168
JBrowse link
G Phf1 PHD finger protein 1 ISO RGD PMID:23642229 PMID:24035451 RGD:9479074 RGD:9479148 NCBI chrNW_004955437:1,943,049...1,947,027
Ensembl chrNW_004955437:1,943,065...1,946,705
JBrowse link
G Phf19 PHD finger protein 19 ISO RGD PMID:23642229 PMID:24035451 RGD:9479074 RGD:9479148 NCBI chrNW_004955419:7,160,249...7,179,323
Ensembl chrNW_004955419:7,160,249...7,179,318
JBrowse link
G Phf2 PHD finger protein 2 ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955515:4,428,068...4,471,642
Ensembl chrNW_004955515:4,429,957...4,471,641
JBrowse link
G Phf8 PHD finger protein 8 ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955475:1,105,619...1,230,758
Ensembl chrNW_004955475:1,105,619...1,230,756
JBrowse link
G Prdm16 PR/SET domain 16 ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955486:8,139,848...8,327,788
Ensembl chrNW_004955486:8,137,531...8,327,977
JBrowse link
G Prdm2 PR/SET domain 2 ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955527:4,005,410...4,105,376
Ensembl chrNW_004955527:4,012,332...4,105,311
JBrowse link
G Prdm8 PR/SET domain 8 ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955433:4,443,339...4,463,687
Ensembl chrNW_004955433:4,459,669...4,462,928
JBrowse link
G Prmt1 protein arginine methyltransferase 1 ISO RGD PMID:24583552 RGD:9479047 NCBI chrNW_004955559:1,205,340...1,215,672
Ensembl chrNW_004955559:1,203,283...1,215,021
JBrowse link
G Prmt2 protein arginine methyltransferase 2 ISO RGD PMID:24583552 RGD:9479047 NCBI chrNW_004955407:42,991,305...43,019,332
Ensembl chrNW_004955407:42,992,469...43,018,760
JBrowse link
G Prmt5 protein arginine methyltransferase 5 ISO RGD PMID:24583552 RGD:9479047 NCBI chrNW_004955409:37,369,507...37,378,034
Ensembl chrNW_004955409:37,369,234...37,378,093
JBrowse link
G Prmt6 protein arginine methyltransferase 6 ISO RGD PMID:24583552 RGD:9479047 NCBI chrNW_004955435:10,816,787...10,818,047
Ensembl chrNW_004955435:10,816,831...10,817,961
JBrowse link
G Prmt7 protein arginine methyltransferase 7 ISO RGD PMID:24583552 RGD:9479047 NCBI chrNW_004955484:8,299,427...8,352,465
Ensembl chrNW_004955484:8,299,427...8,340,287
JBrowse link
G Rag2 recombination activating 2 ISO RGD PMID:23642229 RGD:9479074 NCBI chrNW_004955422:9,867,307...9,869,732
Ensembl chrNW_004955422:9,867,307...9,869,732
JBrowse link
G Rbbp5 RB binding protein 5, histone lysine methyltransferase complex subunit ISO RGD PMID:22663077 RGD:9479053 NCBI chrNW_004955406:40,868,290...40,904,343
Ensembl chrNW_004955406:40,867,527...40,904,349
JBrowse link
G Ring1 ring finger protein 1 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chrNW_004955437:1,782,156...1,785,811
Ensembl chrNW_004955437:1,782,115...1,788,842
JBrowse link
G Rnf2 ring finger protein 2 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chrNW_004955406:23,672,947...23,725,253 JBrowse link
G Setd1a SET domain containing 1A, histone lysine methyltransferase ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chrNW_004955493:7,808,652...7,834,886
Ensembl chrNW_004955493:7,808,652...7,834,880
JBrowse link
G Setd1b SET domain containing 1B, histone lysine methyltransferase ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chrNW_004955482:6,598,176...6,621,944
Ensembl chrNW_004955482:6,600,262...6,621,722
JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955420:25,070,626...25,178,410
Ensembl chrNW_004955420:25,090,798...25,177,760
JBrowse link
G Setd7 SET domain containing 7, histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955428:4,131,431...4,178,250
Ensembl chrNW_004955428:4,131,103...4,178,250
JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955588:290,497...338,438
Ensembl chrNW_004955588:290,168...338,426
JBrowse link
G Sgf29 SAGA complex associated factor 29 ISO RGD PMID:23642229 PMID:24035451 RGD:9479074 RGD:9479148 NCBI chrNW_004955493:6,759,426...6,774,796
Ensembl chrNW_004955493:6,759,426...6,774,796
JBrowse link
G Sirt1 sirtuin 1 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004955425:20,280,725...20,307,663
Ensembl chrNW_004955425:20,279,963...20,307,663
JBrowse link
G Sirt2 sirtuin 2 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004955468:626,365...644,441
Ensembl chrNW_004955468:626,365...644,441
JBrowse link
G Sirt3 sirtuin 3 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004955476:11,794,951...11,826,244
Ensembl chrNW_004955476:11,794,951...11,826,237
JBrowse link
G Sirt4 sirtuin 4 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004955455:11,322,812...11,334,786
Ensembl chrNW_004955455:11,324,479...11,334,817
JBrowse link
G Sirt5 sirtuin 5 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004955465:1,129,217...1,167,604
Ensembl chrNW_004955465:1,129,217...1,167,604
JBrowse link
G Sirt6 sirtuin 6 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004955495:4,641,883...4,650,518
Ensembl chrNW_004955495:4,644,023...4,650,083
JBrowse link
G Sirt7 sirtuin 7 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004955506:1,252,271...1,258,728
Ensembl chrNW_004955506:1,252,274...1,258,728
JBrowse link
G Smarca2 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 2 ISO RGD PMID:24686119 RGD:9479075 NCBI chrNW_004955434:6,420,850...6,592,797
Ensembl chrNW_004955434:6,420,854...6,594,425
JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 ISO RGD PMID:24686119 RGD:9479075 NCBI chrNW_004955495:2,021,671...2,105,155
Ensembl chrNW_004955495:2,021,566...2,105,397
JBrowse link
G Smyd1 SET and MYND domain containing 1 ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955424:769,287...800,646
Ensembl chrNW_004955424:769,287...800,885
JBrowse link
G Smyd2 SET and MYND domain containing 2 ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955406:3,467,123...3,509,156
Ensembl chrNW_004955406:3,465,924...3,509,156
JBrowse link
G Smyd3 SET and MYND domain containing 3 ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955406:8,768,365...9,417,612
Ensembl chrNW_004955406:8,768,588...9,417,525
JBrowse link
G Spin1 spindlin 1 ISO RGD PMID:24035451 RGD:9479148 NCBI chrNW_004955515:3,470,956...3,518,909
Ensembl chrNW_004955515:3,470,956...3,513,728
JBrowse link
G Ssrp1 structure specific recognition protein 1 ISO RGD PMID:23288364 RGD:9068945 NCBI chrNW_004955511:2,378,720...2,388,201
Ensembl chrNW_004955511:2,378,652...2,388,198
JBrowse link
G Supt16h SPT16 homolog, facilitates chromatin remodeling subunit ISO RGD PMID:23288364 RGD:9068945 NCBI chrNW_004955550:2,074,646...2,114,634
Ensembl chrNW_004955550:2,074,941...2,114,528
JBrowse link
G Suv39h1 SUV39H1 histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955543:258,479...271,128
Ensembl chrNW_004955543:258,479...272,473
JBrowse link
G Suv39h2 SUV39H2 histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004955429:19,503,197...19,526,454
Ensembl chrNW_004955429:19,503,197...19,528,027
JBrowse link
G Taf1 TATA-box binding protein associated factor 1 ISO RGD PMID:23642229 PMID:24686119 RGD:9479074 RGD:9479075 NCBI chrNW_004955475:10,930,175...11,006,876
Ensembl chrNW_004955475:10,930,192...11,005,724
JBrowse link
G Tdrd3 tudor domain containing 3 ISO RGD PMID:23211769 PMID:24035451 RGD:9479148 RGD:9479163 NCBI chrNW_004955404:44,329,159...44,457,958
Ensembl chrNW_004955404:44,328,795...44,457,784
JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 ISO RGD PMID:23642229 PMID:24035451 RGD:9479074 RGD:9479148 NCBI chrNW_004955416:9,962,736...10,035,433
Ensembl chrNW_004955416:9,962,897...10,035,278
JBrowse link
G Trim24 tripartite motif containing 24 ISO RGD PMID:23642229 RGD:9479074 NCBI chrNW_004955494:4,308,924...4,421,588
Ensembl chrNW_004955494:4,308,924...4,370,160
JBrowse link
G Trim33 tripartite motif containing 33 ISO RGD PMID:23642229 PMID:24686119 RGD:9479074 RGD:9479075 NCBI chrNW_004955435:17,631,596...17,750,261
Ensembl chrNW_004955435:17,631,602...17,750,261
JBrowse link
G Uhrf1 ubiquitin like with PHD and ring finger domains 1 ISO RGD PMID:23642229 PMID:24035451 RGD:9479074 RGD:9479148 NCBI chrNW_004955495:4,153,898...4,154,611 JBrowse link
G Usp12 ubiquitin specific peptidase 12 ISO RGD PMID:24647359 RGD:9479061 NCBI chrNW_004955497:6,524,487...6,613,403
Ensembl chrNW_004955497:6,524,487...6,556,675
JBrowse link
G Usp16 ubiquitin specific peptidase 16 ISO RGD PMID:24647359 RGD:9479061 NCBI chrNW_004955407:28,375,246...28,413,279 JBrowse link
G Usp21 ubiquitin specific peptidase 21 ISO RGD PMID:24647359 RGD:9479061 NCBI chrNW_004955468:12,923,121...12,929,780
Ensembl chrNW_004955468:12,924,574...12,929,497
JBrowse link
G Usp22 ubiquitin specific peptidase 22 ISO RGD PMID:24647359 RGD:9479061 NCBI chrNW_004955577:979,317...1,002,478
Ensembl chrNW_004955577:978,152...1,002,480
JBrowse link
G Usp3 ubiquitin specific peptidase 3 ISO RGD PMID:24647359 RGD:9479061 NCBI chrNW_004955450:11,729,433...11,802,462
Ensembl chrNW_004955450:11,727,104...11,802,462
JBrowse link
G Usp44 ubiquitin specific peptidase 44 ISO RGD PMID:24647359 RGD:9479061 NCBI chrNW_004955405:31,977,045...32,006,733
Ensembl chrNW_004955405:31,977,602...32,006,810
JBrowse link
G Wdr5 WD repeat domain 5 ISO RGD PMID:22663077 PMID:23642229 RGD:9479053 RGD:9479074 NCBI chrNW_004955513:3,198,655...3,213,754
Ensembl chrNW_004955513:3,198,980...3,216,468
JBrowse link
G Wdr82 WD repeat domain 82 ISO RGD PMID:22663077 RGD:9479053 NCBI chrNW_004955532:3,860,785...3,880,714
Ensembl chrNW_004955532:3,863,492...3,880,713
JBrowse link
G Ywhaz tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta ISO RGD PMID:23642229 RGD:9479074 NCBI chrNW_004955417:16,047,263...16,070,506
Ensembl chrNW_004955417:16,047,263...16,072,854
JBrowse link
homologous recombination pathway of double-strand break repair term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase ISO RGD PMID:20690856 RGD:8662366 NCBI chrNW_004955416:14,814,753...14,899,865
Ensembl chrNW_004955416:14,842,033...14,899,687
JBrowse link
G Brca1 BRCA1 DNA repair associated ISO RGD PMID:16498454 PMID:24326623 RGD:1578504 RGD:8661237 NCBI chrNW_004955451:16,819,463...16,870,780
Ensembl chrNW_004955451:16,819,023...16,855,528
JBrowse link
G Brca2 BRCA2 DNA repair associated ISO RGD PMID:20690856 RGD:8662366 NCBI chrNW_004955431:13,449,287...13,526,878
Ensembl chrNW_004955431:13,449,543...13,527,432
JBrowse link
G Dna2 DNA replication helicase/nuclease 2 ISO RGD PMID:20690856 RGD:8662366 NCBI chrNW_004955425:20,664,412...20,705,070
Ensembl chrNW_004955425:20,661,727...20,702,754
JBrowse link
G Exo1 exonuclease 1 ISO RGD PMID:20690856 RGD:8662366 NCBI chrNW_004955406:10,248,981...10,276,207
Ensembl chrNW_004955406:10,245,886...10,275,522
JBrowse link
G Nbn nibrin ISO RGD PMID:20690856 RGD:8662366 NCBI chrNW_004955417:6,840,916...6,880,479
Ensembl chrNW_004955417:6,839,312...6,880,133
JBrowse link
G Rad50 RAD50 double strand break repair protein ISO RGD PMID:16498454 PMID:20690856 RGD:1578504 RGD:8662366 NCBI chrNW_004955408:3,953,801...4,035,494
Ensembl chrNW_004955408:3,953,800...4,035,494
JBrowse link
G Rad51 RAD51 recombinase ISO RGD PMID:20690856 RGD:8662366 NCBI chrNW_004955416:7,566,715...7,590,628
Ensembl chrNW_004955416:7,566,686...7,590,628
JBrowse link
G Rad51b RAD51 paralog B ISO RGD PMID:20690856 RGD:8662366 NCBI chrNW_004955466:1,686,472...2,388,146
Ensembl chrNW_004955466:2,137,192...2,381,450
JBrowse link
G Rad51c RAD51 paralog C ISO RGD PMID:20690856 RGD:8662366 NCBI chrNW_004955451:4,053,195...4,178,226
Ensembl chrNW_004955451:4,145,226...4,178,487
JBrowse link
G Rad51d RAD51 paralog D ISO RGD PMID:20690856 RGD:8662366 NCBI chrNW_004955481:9,795,102...9,810,426
Ensembl chrNW_004955481:9,795,102...9,810,426
JBrowse link
G Rad54b RAD54 homolog B ISO RGD PMID:20690856 RGD:8662366 NCBI chrNW_004955417:10,598,295...10,685,999
Ensembl chrNW_004955417:10,597,450...10,686,005
JBrowse link
G Rbbp8 RB binding protein 8, endonuclease ISO RGD PMID:24326623 RGD:8661237 NCBI chrNW_004955402:11,245,857...11,331,872
Ensembl chrNW_004955402:11,245,819...11,335,367
JBrowse link
G Xrcc2 X-ray repair cross complementing 2 ISO RGD PMID:20690856 RGD:8662366 NCBI chrNW_004955491:6,579,443...6,629,410
Ensembl chrNW_004955491:6,599,085...6,629,439
JBrowse link
G Xrcc3 X-ray repair cross complementing 3 ISO RGD PMID:20690856 RGD:8662366 NCBI chrNW_004955538:2,499,297...2,511,898
Ensembl chrNW_004955538:2,501,607...2,509,778
JBrowse link
INO80 family mediated chromatin remodeling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actb actin beta ISO RGD PMID:21502417 RGD:9495926 NCBI chrNW_004955460:10,358,100...10,361,585
Ensembl chrNW_004955460:10,356,699...10,361,585
JBrowse link
G Actl6a actin like 6A ISO RGD PMID:21502417 RGD:9495926 NCBI chrNW_004955420:8,745,390...8,764,993
Ensembl chrNW_004955420:8,744,597...8,764,993
JBrowse link
G Actr5 actin related protein 5 ISO RGD PMID:21502417 RGD:9495926 NCBI chrNW_004955445:17,991,969...18,024,525
Ensembl chrNW_004955445:17,991,969...18,024,818
JBrowse link
G Actr6 actin related protein 6 ISO RGD PMID:21502417 RGD:9495926 NCBI chrNW_004955405:35,942,690...35,962,422
Ensembl chrNW_004955405:35,942,690...35,962,422
JBrowse link
G Actr8 actin related protein 8 ISO RGD PMID:21502417 RGD:9495926 NCBI chrNW_004955430:3,851,758...3,867,291
Ensembl chrNW_004955430:3,851,758...3,867,291
JBrowse link
G Brd8 bromodomain containing 8 ISO RGD PMID:21502417 RGD:9495926 NCBI chrNW_004955418:2,232,853...2,275,812
Ensembl chrNW_004955418:2,232,842...2,275,875
JBrowse link
G Dmap1 DNA methyltransferase 1 associated protein 1 ISO RGD PMID:21502417 RGD:9495926 NCBI chrNW_004955464:13,984,748...13,993,411
Ensembl chrNW_004955464:13,982,713...13,993,410
JBrowse link
G Ep400 E1A binding protein p400 ISO RGD PMID:21502417 RGD:9495926 NCBI chrNW_004955482:639,316...746,331
Ensembl chrNW_004955482:641,214...746,331
JBrowse link
G Epc1 enhancer of polycomb homolog 1 ISO RGD PMID:21502417 RGD:9495926 NCBI chrNW_004955429:23,819,261...23,910,279
Ensembl chrNW_004955429:23,817,254...23,909,946
JBrowse link
G Epc2 enhancer of polycomb homolog 2 ISO RGD PMID:21502417 RGD:9495926 NCBI chrNW_004955440:14,573,960...14,645,171
Ensembl chrNW_004955440:14,573,960...14,646,431
JBrowse link
G Ing3 inhibitor of growth family member 3 ISO RGD PMID:21502417 RGD:9495926 NCBI chrNW_004955479:2,741,554...2,771,524
Ensembl chrNW_004955479:2,743,655...2,774,247
JBrowse link
G Ino80 INO80 complex ATPase subunit ISO RGD PMID:21502417 RGD:9495926 NCBI chrNW_004955416:7,870,521...8,020,862
Ensembl chrNW_004955416:7,870,258...7,961,812
JBrowse link
G Ino80b INO80 complex subunit B ISO RGD PMID:21502417 RGD:9495926 NCBI chrNW_004955424:11,324,741...11,327,466
Ensembl chrNW_004955424:11,324,308...11,327,170
JBrowse link
G Ino80c INO80 complex subunit C ISO RGD PMID:21502417 RGD:9495926 NCBI chrNW_004955402:22,189,943...22,210,315
Ensembl chrNW_004955402:22,189,943...22,210,658
JBrowse link
G Ino80d INO80 complex subunit D ISO RGD PMID:21502417 RGD:9495926 NCBI chrNW_004955457:8,913,625...8,983,859
Ensembl chrNW_004955457:8,924,615...8,973,274
JBrowse link
G Ino80e INO80 complex subunit E ISO RGD PMID:21502417 RGD:9495926 NCBI chrNW_004955493:6,953,945...6,963,910
Ensembl chrNW_004955493:6,949,534...6,964,366
JBrowse link
G Kat5 lysine acetyltransferase 5 ISO RGD PMID:21502417 RGD:9495926 NCBI chrNW_004955422:19,557,498...19,565,044
Ensembl chrNW_004955422:19,557,498...19,565,036
JBrowse link
G Mcrs1 microspherule protein 1 ISO RGD PMID:21502417 RGD:9495926 NCBI chrNW_004955547:180,783...189,980
Ensembl chrNW_004955547:178,301...189,980
JBrowse link
G Meaf6 MYST/Esa1 associated factor 6 ISO RGD PMID:21502417 RGD:9495926 NCBI chrNW_004955452:15,325,227...15,347,175
Ensembl chrNW_004955452:15,325,227...15,347,175
JBrowse link
G Morf4l1 mortality factor 4 like 1 ISO RGD PMID:21502417 RGD:9495926 NCBI chrNW_004955533:14,770...28,290
Ensembl chrNW_004955533:14,730...27,643
JBrowse link
G Morf4l2 mortality factor 4 like 2 ISO RGD PMID:21502417 RGD:9495926 NCBI chrNW_004955548:682,409...685,886
Ensembl chrNW_004955548:682,409...685,900
JBrowse link
G Mrgbp MRG domain binding protein ISO RGD PMID:21502417 RGD:9495926 NCBI chrNW_004955528:1,320,061...1,324,094 JBrowse link
G Nfrkb nuclear factor related to kappaB binding protein ISO RGD PMID:21502417 RGD:9495926 NCBI chrNW_004955412:30,817,151...30,848,992
Ensembl chrNW_004955412:30,813,769...30,849,001
JBrowse link
G Ruvbl1 RuvB like AAA ATPase 1 ISO RGD PMID:21502417 RGD:9495926 NCBI chrNW_004955429:15,598,465...15,632,290
Ensembl chrNW_004955429:15,598,465...15,633,713
JBrowse link
G Ruvbl2 RuvB like AAA ATPase 2 ISO RGD PMID:21502417 RGD:9495926 NCBI chrNW_004955559:1,657,241...1,674,272
Ensembl chrNW_004955559:1,654,059...1,674,272
JBrowse link
G Srcap Snf2 related CREBBP activator protein ISO RGD PMID:21502417 RGD:9495926 NCBI chrNW_004955493:7,554,724...7,602,560
Ensembl chrNW_004955493:7,559,723...7,602,535
JBrowse link
G Tfpt TCF3 fusion partner ISO RGD PMID:21502417 RGD:9495926 NCBI chrNW_004955604:136,357...139,799
Ensembl chrNW_004955604:136,427...139,761
JBrowse link
G Trrap transformation/transcription domain associated protein ISO RGD PMID:21502417 RGD:9495926 NCBI chrNW_004955460:14,641,891...14,761,641
Ensembl chrNW_004955460:14,644,133...14,760,787
JBrowse link
G Uchl5 ubiquitin C-terminal hydrolase L5 ISO RGD PMID:21502417 RGD:9495926 NCBI chrNW_004955406:30,432,652...30,468,741 JBrowse link
G Vps72 vacuolar protein sorting 72 homolog ISO RGD PMID:21502417 RGD:9495926 NCBI chrNW_004955588:537,122...550,564
Ensembl chrNW_004955588:536,788...551,241
JBrowse link
G Yeats4 YEATS domain containing 4 ISO RGD PMID:21502417 RGD:9495926 NCBI chrNW_004955405:9,677,701...9,706,541 JBrowse link
G Yy1 YY1 transcription factor ISO RGD PMID:21502417 RGD:9495926 NCBI chrNW_004955438:21,341,374...21,377,674 JBrowse link
G Znhit1 zinc finger HIT-type containing 1 ISO RGD PMID:21502417 RGD:9495926 NCBI chrNW_004955456:16,070,622...16,082,286
Ensembl chrNW_004955456:16,070,622...16,082,286
JBrowse link
ISWI family mediated chromatin remodeling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz1a bromodomain adjacent to zinc finger domain 1A ISO RGD PMID:21358755 RGD:9495920 NCBI chrNW_004955409:26,136,961...26,231,960
Ensembl chrNW_004955409:26,149,665...26,231,180
JBrowse link
G Baz1b bromodomain adjacent to zinc finger domain 1B ISO RGD PMID:21358755 RGD:9495920 NCBI chrNW_004955456:14,185,091...14,242,391
Ensembl chrNW_004955456:14,185,107...14,240,688
JBrowse link
G Bptf bromodomain PHD finger transcription factor ISO RGD PMID:21358755 RGD:9495920 NCBI chrNW_004955478:6,990,816...7,088,751
Ensembl chrNW_004955478:6,990,833...7,086,721
JBrowse link
G Chrac1 chromatin accessibility complex subunit 1 ISO RGD PMID:21358755 RGD:9495920 NCBI chrNW_004955461:14,184,318...14,189,645
Ensembl chrNW_004955461:14,185,737...14,189,645
JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit ISO RGD PMID:21358755 RGD:9495920 NCBI chrNW_004955419:14,086,940...14,089,906
Ensembl chrNW_004955419:14,086,940...14,089,330
JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor ISO RGD PMID:21358755 RGD:9495920 NCBI chrNW_004955452:10,955,399...10,975,036
Ensembl chrNW_004955452:10,955,399...10,975,036
JBrowse link
G Rbbp7 RB binding protein 7, chromatin remodeling factor ISO RGD PMID:21358755 RGD:9495920 NCBI chrNW_004955519:1,460,199...1,482,699 JBrowse link
G Smarca1 SNF2 related chromatin remodeling ATPase 1 ISO RGD PMID:21358755 RGD:9495920 NCBI chrNW_004955473:5,498,738...5,572,863
Ensembl chrNW_004955473:5,498,674...5,573,169
JBrowse link
G Smarca5 SNF2 related chromatin remodeling ATPase 5 ISO RGD PMID:21358755 RGD:9495920 NCBI chrNW_004955471:12,206,462...12,240,219
Ensembl chrNW_004955471:12,203,318...12,237,333
JBrowse link
mismatch repair pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exo1 exonuclease 1 ISO RGD PMID:18157157 RGD:2306716 NCBI chrNW_004955406:10,248,981...10,276,207
Ensembl chrNW_004955406:10,245,886...10,275,522
JBrowse link
G Hmgb1 high mobility group box 1 ISO RGD PMID:18157157 RGD:2306716 NCBI chrNW_004955431:15,373,207...15,377,339
Ensembl chrNW_004955431:15,373,207...15,377,339
JBrowse link
G Lig1 DNA ligase 1 ISO RGD PMID:18157157 RGD:2306716 NCBI chrNW_004955609:118,442...160,009
Ensembl chrNW_004955609:126,278...160,063
JBrowse link
G Mlh1 mutL homolog 1 ISO RGD PMID:18157157 RGD:2306716 NCBI chrNW_004955421:3,890,291...3,936,892
Ensembl chrNW_004955421:3,890,306...3,936,526
JBrowse link
G Mlh3 mutL homolog 3 ISO RGD PMID:18157157 RGD:2306716 NCBI chrNW_004955523:515,409...547,257
Ensembl chrNW_004955523:518,565...546,410
JBrowse link
G Msh2 mutS homolog 2 ISO RGD PMID:18157157 RGD:2306716 NCBI chrNW_004955441:14,188,315...14,247,608
Ensembl chrNW_004955441:14,187,805...14,247,698
JBrowse link
G Msh3 mutS homolog 3 ISO RGD PMID:18157157 RGD:2306716 NCBI chrNW_004955418:29,149,595...29,274,067
Ensembl chrNW_004955418:29,150,085...29,274,437
JBrowse link
G Msh6 mutS homolog 6 ISO RGD PMID:18157157 RGD:2306716 NCBI chrNW_004955441:14,451,207...14,471,316
Ensembl chrNW_004955441:14,451,307...14,471,227
JBrowse link
G Pcna proliferating cell nuclear antigen ISO RGD PMID:18157157 RGD:2306716 NCBI chrNW_004955415:15,744,601...15,748,910
Ensembl chrNW_004955415:15,744,601...15,749,673
JBrowse link
G Pms1 PMS1 homolog 1, mismatch repair system component ISO RGD PMID:18157157 RGD:2306716 NCBI chrNW_004955403:9,021,488...9,100,442
Ensembl chrNW_004955403:9,022,078...9,100,442
JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component ISO RGD PMID:18157157 RGD:2306716 NCBI chrNW_004955460:13,762,854...13,791,462 JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit ISO RGD PMID:18157157 RGD:2306716 NCBI chrNW_004955559:712,375...730,551
Ensembl chrNW_004955559:712,321...725,661
JBrowse link
G Pold2 DNA polymerase delta 2, accessory subunit ISO RGD PMID:18157157 RGD:2306716 NCBI chrNW_004955456:7,853,476...7,860,108
Ensembl chrNW_004955456:7,853,476...7,860,108
JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit ISO RGD PMID:18157157 RGD:2306716 NCBI chrNW_004955414:17,064,379...17,111,946 JBrowse link
G Pold4 DNA polymerase delta 4, accessory subunit ISO RGD PMID:18157157 RGD:2306716 NCBI chrNW_004955422:18,116,604...18,118,280
Ensembl chrNW_004955422:18,116,610...18,118,280
JBrowse link
G Rfc1 replication factor C subunit 1 ISO RGD PMID:18157157 RGD:2306716 NCBI chrNW_004955443:7,969,117...8,051,734
Ensembl chrNW_004955443:7,983,840...8,051,089
JBrowse link
G Rfc2 replication factor C subunit 2 ISO RGD PMID:18157157 RGD:2306716 NCBI chrNW_004955456:13,659,122...13,671,405
Ensembl chrNW_004955456:13,659,157...13,671,181
JBrowse link
G Rfc3 replication factor C subunit 3 ISO RGD PMID:18157157 RGD:2306716 NCBI chrNW_004955431:12,071,465...12,084,570
Ensembl chrNW_004955431:12,069,204...12,084,577
JBrowse link
G Rfc4 replication factor C subunit 4 ISO RGD PMID:18157157 RGD:2306716 NCBI chrNW_004955420:20,948,549...20,967,845
Ensembl chrNW_004955420:20,948,549...20,967,845
JBrowse link
G Rfc5 replication factor C subunit 5 ISO RGD PMID:18157157 RGD:2306716 NCBI chrNW_004955455:13,325,912...13,337,241
Ensembl chrNW_004955455:13,326,271...13,338,050
JBrowse link
G Rpa1 replication protein A1 ISO RGD PMID:18157157 RGD:2306716 NCBI chrNW_004955481:1,304,035...1,361,806 JBrowse link
G Rpa2 replication protein A2 ISO RGD PMID:18157157 RGD:2306716 NCBI chrNW_004955452:7,080,641...7,098,009
Ensembl chrNW_004955452:7,080,579...7,097,742
JBrowse link
G Rpa3 replication protein A3 ISO RGD PMID:18157157 RGD:2306716 NCBI chrNW_004955432:14,723,933...14,727,356
Ensembl chrNW_004955432:14,723,751...14,727,290
JBrowse link
G Rpa4 replication protein A4 ISO RGD PMID:18157157 RGD:2306716 NCBI chrNW_004955503:2,514,460...2,516,973 JBrowse link
non-homologous end joining pathway of double-strand break repair term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aplf aprataxin and PNKP like factor ISO RGD PMID:20192759 RGD:8662352 NCBI chrNW_004955424:16,338,546...16,449,074
Ensembl chrNW_004955424:16,336,228...16,448,766
JBrowse link
G Aptx aprataxin ISO RGD PMID:20192759 RGD:8662352 NCBI chrNW_004955472:2,645,716...2,664,394
Ensembl chrNW_004955472:2,652,869...2,664,272
JBrowse link
G Dclre1c DNA cross-link repair 1C ISO RGD PMID:20192759 RGD:8662352 NCBI chrNW_004955429:19,461,446...19,501,908
Ensembl chrNW_004955429:19,461,528...19,505,321
JBrowse link
G Dntt DNA nucleotidylexotransferase ISO RGD PMID:20192759 RGD:8662352 NCBI chrNW_004955507:2,494,074...2,551,326
Ensembl chrNW_004955507:2,493,718...2,551,336
JBrowse link
G Lig4 DNA ligase 4 ISO RGD PMID:20192759 RGD:8662352 NCBI chrNW_004955404:3,606,077...3,615,193
Ensembl chrNW_004955404:3,606,077...3,615,193
JBrowse link
G Nhej1 non-homologous end joining factor 1 ISO RGD PMID:20192759 RGD:8662352 NCBI chrNW_004955453:14,278,773...14,362,167
Ensembl chrNW_004955453:14,281,069...14,363,876
JBrowse link
G Pnkp polynucleotide kinase 3'-phosphatase ISO RGD PMID:20192759 RGD:8662352 NCBI chrNW_004955559:1,064,924...1,070,120 JBrowse link
G Poll DNA polymerase lambda ISO RGD PMID:20192759 RGD:8662352 NCBI chrNW_004955485:8,691,886...8,700,681
Ensembl chrNW_004955485:8,691,453...8,703,872
JBrowse link
G Polm DNA polymerase mu ISO RGD PMID:20192759 RGD:8662352 NCBI chrNW_004955456:7,886,182...7,893,800
Ensembl chrNW_004955456:7,886,291...7,895,085
JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit ISO RGD PMID:20192759 RGD:8662352 NCBI chrNW_004955454:7,733,697...7,890,896
Ensembl chrNW_004955454:7,733,978...7,890,867
JBrowse link
G Rbbp8 RB binding protein 8, endonuclease ISO RGD PMID:19633668 RGD:401940172 NCBI chrNW_004955402:11,245,857...11,331,872
Ensembl chrNW_004955402:11,245,819...11,335,367
JBrowse link
G Rif1 replication timing regulatory factor 1 ISO RGD PMID:24326623 RGD:8661237 NCBI chrNW_004955440:16,977,710...17,047,809
Ensembl chrNW_004955440:16,979,042...17,041,748
JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 ISO RGD PMID:24326623 RGD:8661237 NCBI chrNW_004955416:9,962,736...10,035,433
Ensembl chrNW_004955416:9,962,897...10,035,278
JBrowse link
G Xrcc4 X-ray repair cross complementing 4 ISO RGD PMID:20192759 RGD:8662352 NCBI chrNW_004955418:27,174,510...27,426,245
Ensembl chrNW_004955418:27,173,659...27,426,264
JBrowse link
G Xrcc5 X-ray repair cross complementing 5 ISO RGD PMID:20192759 RGD:8662352 NCBI chrNW_004955453:16,967,453...17,054,634
Ensembl chrNW_004955453:16,967,453...17,054,634
JBrowse link
G Xrcc6 X-ray repair cross complementing 6 ISO RGD PMID:20192759 RGD:8662352 NCBI chrNW_004955413:27,135,785...27,158,344
Ensembl chrNW_004955413:27,135,805...27,159,750
JBrowse link
nucleotide excision repair pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cetn2 centrin 2 ISO RGD PMID:22572993 RGD:7246920 NCBI chrNW_004955498:8,131,356...8,135,751
Ensembl chrNW_004955498:8,131,295...8,135,751
JBrowse link
G Ddb1 damage specific DNA binding protein 1 ISO RGD PMID:22572993 RGD:7246920 NCBI chrNW_004955511:6,209,777...6,233,594
Ensembl chrNW_004955511:6,209,777...6,233,594
JBrowse link
G Ddb2 damage specific DNA binding protein 2 ISO RGD PMID:22572993 RGD:7246920 NCBI chrNW_004955422:961,602...977,066
Ensembl chrNW_004955422:961,893...974,338
JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO RGD PMID:19154342 RGD:7246926 NCBI chrNW_004955555:2,393,510...2,430,180
Ensembl chrNW_004955555:2,393,278...2,406,582
JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit ISO SMPDB
RGD
PMID:22572993 RGD:7246920 SMP:00478 NCBI chrNW_004955555:2,355,005...2,369,599
Ensembl chrNW_004955555:2,355,005...2,369,599
JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit ISO RGD PMID:22572993 RGD:7246920 NCBI chrNW_004955459:3,210,936...3,238,401
Ensembl chrNW_004955459:3,210,479...3,242,576
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit ISO SMPDB
RGD
PMID:19154342 RGD:7246926 SMP:00478 NCBI chrNW_004955442:4,833,453...4,861,201
Ensembl chrNW_004955442:4,831,721...4,861,122
JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease ISO SMPDB
RGD
PMID:19154342 RGD:7246926 SMP:00478 NCBI chrNW_004955404:8,294,506...8,321,505
Ensembl chrNW_004955404:8,294,346...8,321,112
JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor ISO RGD PMID:18166977 PMID:22824526 RGD:7246919 RGD:7246923 NCBI chrNW_004955556:745,175...812,215
Ensembl chrNW_004955556:748,231...813,133
JBrowse link
G Gtf2h1 general transcription factor IIH subunit 1 ISO RGD PMID:22572993 RGD:7246920 NCBI chrNW_004955414:33,028,701...33,063,233
Ensembl chrNW_004955414:33,028,701...33,063,233
JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 ISO RGD PMID:22824526 RGD:7246919 NCBI chrNW_004955407:38,136,386...38,142,587
Ensembl chrNW_004955407:38,136,386...38,143,479
JBrowse link
G Lig1 DNA ligase 1 ISO SMPDB
RGD
PMID:21601536 RGD:7246935 SMP:00478 NCBI chrNW_004955609:118,442...160,009
Ensembl chrNW_004955609:126,278...160,063
JBrowse link
G Lig3 DNA ligase 3 ISO RGD PMID:21601536 RGD:7246935 NCBI chrNW_004955481:9,696,050...9,716,154
Ensembl chrNW_004955481:9,696,054...9,715,637
JBrowse link
G Pcna proliferating cell nuclear antigen ISO SMPDB
RGD
PMID:17512402 PMID:23545418 RGD:7246931 RGD:7246932 SMP:00478 NCBI chrNW_004955415:15,744,601...15,748,910
Ensembl chrNW_004955415:15,744,601...15,749,673
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit ISO RGD PMID:21601536 RGD:7246935 NCBI chrNW_004955559:712,375...730,551
Ensembl chrNW_004955559:712,321...725,661
JBrowse link
G Pold2 DNA polymerase delta 2, accessory subunit ISO RGD PMID:21601536 RGD:7246935 NCBI chrNW_004955456:7,853,476...7,860,108
Ensembl chrNW_004955456:7,853,476...7,860,108
JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit ISO RGD PMID:21601536 RGD:7246935 NCBI chrNW_004955414:17,064,379...17,111,946 JBrowse link
G Pold4 DNA polymerase delta 4, accessory subunit ISO RGD PMID:21601536 RGD:7246935 NCBI chrNW_004955422:18,116,604...18,118,280
Ensembl chrNW_004955422:18,116,610...18,118,280
JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit ISO SMPDB
RGD
PMID:12806123 PMID:21601536 RGD:7246935 RGD:7246936 SMP:00478 NCBI chrNW_004955482:373,467...418,000
Ensembl chrNW_004955482:373,555...417,266
JBrowse link
G Pole2 DNA polymerase epsilon 2, accessory subunit ISO RGD PMID:12806123 RGD:7246936 NCBI chrNW_004955409:12,983,488...13,014,669
Ensembl chrNW_004955409:12,983,586...13,014,578
JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit ISO RGD PMID:12806123 RGD:7246936 NCBI chrNW_004955419:14,086,940...14,089,906
Ensembl chrNW_004955419:14,086,940...14,089,330
JBrowse link
G Pole4 DNA polymerase epsilon 4, accessory subunit ISO RGD PMID:12806123 RGD:7246936 NCBI chrNW_004955424:10,839,639...10,844,985
Ensembl chrNW_004955424:10,839,639...10,844,985
JBrowse link
G Polk DNA polymerase kappa ISO RGD PMID:21601536 RGD:7246935 NCBI chrNW_004955425:25,164,749...25,228,064
Ensembl chrNW_004955425:25,161,222...25,228,524
JBrowse link
G Polr1a RNA polymerase I subunit A ISO SMPDB SMP:00478 NCBI chrNW_004955424:1,507,935...1,595,068
Ensembl chrNW_004955424:1,508,037...1,593,108
JBrowse link
G Rad23a RAD23 homolog A, nucleotide excision repair protein ISO SMPDB SMP:00478 NCBI chrNW_004955415:31,991,478...31,997,277
Ensembl chrNW_004955415:31,991,479...32,000,250
JBrowse link
G Rad23b RAD23 homolog B, nucleotide excision repair protein ISO RGD PMID:22572993 RGD:7246920 NCBI chrNW_004955419:19,428,415...19,473,181
Ensembl chrNW_004955419:19,429,970...19,460,796
JBrowse link
G Rfc1 replication factor C subunit 1 ISO SMPDB
RGD
PMID:23545418 RGD:7246932 SMP:00478 NCBI chrNW_004955443:7,969,117...8,051,734
Ensembl chrNW_004955443:7,983,840...8,051,089
JBrowse link
G Rfc2 replication factor C subunit 2 ISO RGD PMID:23545418 RGD:7246932 NCBI chrNW_004955456:13,659,122...13,671,405
Ensembl chrNW_004955456:13,659,157...13,671,181
JBrowse link
G Rfc3 replication factor C subunit 3 ISO RGD PMID:23545418 RGD:7246932 NCBI chrNW_004955431:12,071,465...12,084,570
Ensembl chrNW_004955431:12,069,204...12,084,577
JBrowse link
G Rfc4 replication factor C subunit 4 ISO RGD PMID:23545418 RGD:7246932 NCBI chrNW_004955420:20,948,549...20,967,845
Ensembl chrNW_004955420:20,948,549...20,967,845
JBrowse link
G Rfc5 replication factor C subunit 5 ISO RGD PMID:23545418 RGD:7246932 NCBI chrNW_004955455:13,325,912...13,337,241
Ensembl chrNW_004955455:13,326,271...13,338,050
JBrowse link
G Rpa1 replication protein A1 ISO RGD PMID:19154342 RGD:7246926 NCBI chrNW_004955481:1,304,035...1,361,806 JBrowse link
G Rpa2 replication protein A2 ISO RGD PMID:19154342 RGD:7246926 NCBI chrNW_004955452:7,080,641...7,098,009
Ensembl chrNW_004955452:7,080,579...7,097,742
JBrowse link
G Rpa3 replication protein A3 ISO RGD PMID:19154342 RGD:7246926 NCBI chrNW_004955432:14,723,933...14,727,356
Ensembl chrNW_004955432:14,723,751...14,727,290
JBrowse link
G Rpa4 replication protein A4 ISO RGD PMID:19154342 RGD:7246926 NCBI chrNW_004955503:2,514,460...2,516,973 JBrowse link
G Tent4a terminal nucleotidyltransferase 4A ISO SMPDB SMP:00478 NCBI chrNW_004955504:4,443,051...4,476,373
Ensembl chrNW_004955504:4,443,051...4,476,520
JBrowse link
G Xab2 XPA binding protein 2 ISO RGD PMID:22824526 RGD:7246919 NCBI chrNW_004955563:1,630,403...1,638,333
Ensembl chrNW_004955563:1,630,403...1,641,037
JBrowse link
G Xpa XPA, DNA damage recognition and repair factor ISO SMPDB
RGD
PMID:19154342 RGD:7246926 SMP:00478 NCBI chrNW_004955419:27,751,042...27,774,917
Ensembl chrNW_004955419:27,751,043...27,774,917
JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor ISO RGD PMID:21763452 PMID:22572993 RGD:7246920 RGD:7246922 NCBI chrNW_004955429:16,935,901...16,968,285
Ensembl chrNW_004955429:16,935,901...16,955,845
JBrowse link
G Xrcc1 X-ray repair cross complementing 1 ISO RGD PMID:21601536 RGD:7246935 NCBI chrNW_004955555:1,293,416...1,315,839
Ensembl chrNW_004955555:1,293,416...1,315,839
JBrowse link
SWI/SNF family mediated chromatin remodeling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actb actin beta ISO RGD PMID:21358755 RGD:9495920 NCBI chrNW_004955460:10,358,100...10,361,585
Ensembl chrNW_004955460:10,356,699...10,361,585
JBrowse link
G Actl6a actin like 6A ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chrNW_004955420:8,745,390...8,764,993
Ensembl chrNW_004955420:8,744,597...8,764,993
JBrowse link
G Actl6b actin like 6B ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chrNW_004955573:259,133...272,043
Ensembl chrNW_004955573:259,117...272,118
JBrowse link
G Arid1a AT-rich interaction domain 1A ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chrNW_004955452:6,068,631...6,120,759
Ensembl chrNW_004955452:6,068,631...6,120,759
JBrowse link
G Arid1b AT-rich interaction domain 1B ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chrNW_004955439:5,041,111...5,454,692
Ensembl chrNW_004955439:5,043,967...5,412,741
JBrowse link
G Arid2 AT-rich interaction domain 2 ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chrNW_004955500:4,998,555...5,177,180
Ensembl chrNW_004955500:4,998,555...5,175,776
JBrowse link
G Brd7 bromodomain containing 7 ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chrNW_004955433:8,425,976...8,462,431
Ensembl chrNW_004955433:8,424,949...8,461,802
JBrowse link
G Brd9 bromodomain containing 9 ISO RGD PMID:21358755 RGD:9495920 NCBI chrNW_004955504:416,145...434,132
Ensembl chrNW_004955504:415,904...434,142
JBrowse link
G Dpf1 double PHD fingers 1 ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chrNW_004955468:1,195,152...1,209,774
Ensembl chrNW_004955468:1,195,146...1,211,311
JBrowse link
G Dpf2 double PHD fingers 2 ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chrNW_004955422:19,894,502...19,910,989
Ensembl chrNW_004955422:19,892,189...19,910,989
JBrowse link
G Dpf3 double PHD fingers 3 ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chrNW_004955523:2,423,035...2,718,930
Ensembl chrNW_004955523:2,454,908...2,709,262
JBrowse link
G Pbrm1 polybromo 1 ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chrNW_004955430:2,536,086...2,671,094
Ensembl chrNW_004955430:2,536,086...2,670,617
JBrowse link
G Phf10 PHD finger protein 10 ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chrNW_004955411:3,911,966...3,926,995
Ensembl chrNW_004955411:3,911,791...3,930,912
JBrowse link
G Smarca2 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 2 ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chrNW_004955434:6,420,850...6,592,797
Ensembl chrNW_004955434:6,420,854...6,594,425
JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chrNW_004955495:2,021,671...2,105,155
Ensembl chrNW_004955495:2,021,566...2,105,397
JBrowse link
G Smarcb1 SWI/SNF related BAF chromatin remodeling complex subunit B1 ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chrNW_004955455:8,420,263...8,457,105
Ensembl chrNW_004955455:8,415,839...8,457,097
JBrowse link
G Smarcc1 SWI/SNF related BAF chromatin remodeling complex subunit C1 ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chrNW_004955420:24,594,057...24,729,108
Ensembl chrNW_004955420:24,593,830...24,729,108
JBrowse link
G Smarcc2 SWI/SNF related BAF chromatin remodeling complex subunit C2 ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chrNW_004955458:3,764,823...3,787,159
Ensembl chrNW_004955458:3,764,823...3,787,901
JBrowse link
G Smarcd1 SWI/SNF related BAF chromatin remodeling complex subunit D1 ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chrNW_004955547:659,919...673,637
Ensembl chrNW_004955547:659,984...674,705
JBrowse link
G Smarcd2 SWI/SNF related BAF chromatin remodeling complex subunit D2 ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chrNW_004955478:7,984,736...7,996,843
Ensembl chrNW_004955478:7,985,021...7,996,843
JBrowse link
G Smarcd3 SWI/SNF related BAF chromatin remodeling complex subunit D3 ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chrNW_004955491:5,653,284...5,657,546
Ensembl chrNW_004955491:5,651,597...5,657,554
JBrowse link
G Smarce1 SWI/SNF related BAF chromatin remodeling complex subunit E1 ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chrNW_004955451:15,129,619...15,147,487
Ensembl chrNW_004955451:15,129,132...15,147,488
JBrowse link

Term paths to the root