Dna2 (DNA replication helicase/nuclease 2) - Rat Genome Database

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Gene: Dna2 (DNA replication helicase/nuclease 2) Chinchilla lanigera
Analyze
Symbol: Dna2
Name: DNA replication helicase/nuclease 2
RGD ID: 8887962
Description: ENCODES a protein that exhibits 5'-3' DNA helicase activity (ortholog); 5'-flap endonuclease activity (ortholog); DNA binding (ortholog); INVOLVED IN base-excision repair (ortholog); DNA double-strand break processing (ortholog); DNA replication (ortholog); PARTICIPATES IN homologous recombination pathway of double-strand break repair; ASSOCIATED WITH autosomal dominant progressive external ophthalmoplegia with mitochondrial DNA deletions 6 (ortholog); congenital myopathy (ortholog); genetic disease (ortholog); FOUND IN chromosome, telomeric region (ortholog); gamma DNA polymerase complex (ortholog); mitochondrial nucleoid (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DNA replication ATP-dependent helicase/nuclease DNA2
RGD Orthologs
Human
Mouse
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542520,661,727 - 20,702,754 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542520,664,412 - 20,705,070 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Dna2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542520,661,727 - 20,702,754 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542520,664,412 - 20,705,070 (-)NCBIChiLan1.0ChiLan1.0
DNA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381068,414,064 - 68,472,521 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1068,414,064 - 68,472,121 (-)EnsemblGRCh38hg38GRCh38
GRCh371070,173,821 - 70,231,878 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361069,843,827 - 69,901,885 (-)NCBINCBI36Build 36hg18NCBI36
Build 341069,843,827 - 69,901,678NCBI
Celera1063,449,181 - 63,507,264 (-)NCBICelera
Cytogenetic Map10q21.3NCBI
HuRef1064,173,263 - 64,231,457 (-)NCBIHuRef
CHM1_11070,455,594 - 70,514,126 (-)NCBICHM1_1
T2T-CHM13v2.01069,283,292 - 69,341,758 (-)NCBIT2T-CHM13v2.0
Dna2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391062,782,762 - 62,809,967 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1062,782,805 - 62,809,964 (+)EnsemblGRCm39 Ensembl
GRCm381062,946,983 - 62,974,188 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1062,947,026 - 62,974,185 (+)EnsemblGRCm38mm10GRCm38
MGSCv371062,409,777 - 62,436,936 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361062,342,410 - 62,369,534 (+)NCBIMGSCv36mm8
Celera1064,048,162 - 64,075,318 (+)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1032.51NCBI
DNA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1419,626,001 - 19,683,819 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl419,626,977 - 19,684,660 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha419,758,312 - 19,814,534 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0419,896,502 - 19,954,684 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl419,896,751 - 19,954,755 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1419,798,388 - 19,856,607 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0420,000,469 - 20,058,335 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0420,343,723 - 20,401,576 (-)NCBIUU_Cfam_GSD_1.0
Dna2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721361,351,058 - 61,392,148 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365219,843,900 - 9,883,932 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365219,843,867 - 9,884,248 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1471,552,121 - 71,610,740 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11471,550,405 - 71,607,067 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21477,609,353 - 77,643,988 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DNA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1962,926,221 - 62,985,843 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl962,926,674 - 62,985,842 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604823,687,256 - 23,749,223 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dna2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247542,747,097 - 2,791,445 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247542,746,912 - 2,791,560 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000017790   ⟹   ENSCLAP00000017617
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542520,661,727 - 20,702,754 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000017791   ⟹   ENSCLAP00000017618
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542520,661,727 - 20,702,754 (-)Ensembl
RefSeq Acc Id: XM_013514832   ⟹   XP_013370286
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542520,664,412 - 20,702,687 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013514833   ⟹   XP_013370287
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542520,664,412 - 20,705,070 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013514834   ⟹   XP_013370288
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542520,664,412 - 20,702,687 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013370286 (Get FASTA)   NCBI Sequence Viewer  
  XP_013370287 (Get FASTA)   NCBI Sequence Viewer  
  XP_013370288 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000017617.1
  ENSCLAP00000017618
  ENSCLAP00000017618.1
RefSeq Acc Id: XP_013370287   ⟸   XM_013514833
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VM03 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013370288   ⟸   XM_013514834
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VM03 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013370286   ⟸   XM_013514832
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VM03 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000017617   ⟸   ENSCLAT00000017790
RefSeq Acc Id: ENSCLAP00000017618   ⟸   ENSCLAT00000017791

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012086 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000017790.1 UniProtKB/TrEMBL
  ENSCLAT00000017791 ENTREZGENE
  ENSCLAT00000017791.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
  3.90.320.10 UniProtKB/TrEMBL
InterPro Dna2 UniProtKB/TrEMBL
  DNA2/NAM7-like UniProtKB/TrEMBL
  DNA2/NAM7-like_C UniProtKB/TrEMBL
  DNA2/NAM7_AAA_11 UniProtKB/TrEMBL
  DNA2_Rift UniProtKB/TrEMBL
  DNA_replication_fac_Dna2_N UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  PDDEXK-like_dom_sf UniProtKB/TrEMBL
  SF1_C_Upf1 UniProtKB/TrEMBL
NCBI Gene Dna2 ENTREZGENE
PANTHER PTHR10887 UniProtKB/TrEMBL
  PTHR10887:SF433 UniProtKB/TrEMBL
Pfam AAA_11 UniProtKB/TrEMBL
  AAA_12 UniProtKB/TrEMBL
  Dna2 UniProtKB/TrEMBL
  Dna2_Rift UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8C2VLX7_CHILA UniProtKB/TrEMBL
  A0A8C2VM03 ENTREZGENE, UniProtKB/TrEMBL