Ppp2ca (protein phosphatase 2 catalytic subunit alpha) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Ppp2ca (protein phosphatase 2 catalytic subunit alpha) Chinchilla lanigera
Analyze
Symbol: Ppp2ca
Name: protein phosphatase 2 catalytic subunit alpha
RGD ID: 8782177
Description: ENCODES a protein that exhibits beta-2 adrenergic receptor binding (ortholog); enzyme binding (ortholog); GABA receptor binding (ortholog); INVOLVED IN cardiac ventricle development (ortholog); cellular response to calcium ion (ortholog); cellular response to cytokine stimulus (ortholog); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; ataxia telangiectasia-mutated (ATM) signaling pathway; calcium/calmodulin dependent kinase 2 signaling pathway; ASSOCIATED WITH asthma (ortholog); congestive heart failure (ortholog); Experimental Liver Neoplasms (ortholog); FOUND IN chromosome, centromeric region (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554085,433,268 - 5,460,361 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554085,435,117 - 5,460,361 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
cardiac ventricle development  (ISO)
cellular response to calcium ion  (ISO)
cellular response to cytokine stimulus  (ISO)
cellular response to ethanol  (ISO)
cellular response to follicle-stimulating hormone stimulus  (ISO)
cellular response to glucose stimulus  (ISO)
cellular response to insulin stimulus  (ISO)
cellular response to steroid hormone stimulus  (ISO)
heart development  (ISO)
mesoderm development  (ISO)
negative regulation of calcium ion transmembrane transporter activity  (ISO)
negative regulation of epithelial to mesenchymal transition  (ISO)
negative regulation of glycolytic process through fructose-6-phosphate  (ISO)
negative regulation of hippo signaling  (ISO)
negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction  (ISO)
negative regulation of protein import into nucleus  (ISO)
negative regulation of protein phosphorylation  (ISO)
negative regulation of transcription by RNA polymerase II  (ISO)
peptidyl-threonine dephosphorylation  (ISO)
positive regulation of apoptotic process  (ISO)
positive regulation of cysteine-type endopeptidase activity involved in apoptotic process  (ISO)
positive regulation of dephosphorylation  (ISO)
positive regulation of NLRP3 inflammasome complex assembly  (ISO)
positive regulation of protein serine/threonine kinase activity  (ISO)
protein dephosphorylation  (ISO)
regulation of G1/S transition of mitotic cell cycle  (ISO)
regulation of protein autophosphorylation  (ISO)
regulation of protein catabolic process  (ISO)
regulation of protein phosphorylation  (ISO)
regulation of signaling receptor activity  (ISO)
response to lead ion  (ISO)
T cell homeostasis  (ISO)

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ppp2ca
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554085,433,268 - 5,460,361 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554085,435,117 - 5,460,361 (-)NCBIChiLan1.0ChiLan1.0
PPP2CA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385134,194,332 - 134,226,073 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5134,194,035 - 134,226,073 (-)EnsemblGRCh38hg38GRCh38
GRCh375133,530,023 - 133,561,764 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365133,560,047 - 133,589,849 (-)NCBINCBI36Build 36hg18NCBI36
Build 345133,560,046 - 133,589,849NCBI
Celera5129,655,849 - 129,685,663 (-)NCBICelera
Cytogenetic Map5q31.1NCBI
HuRef5128,717,117 - 128,746,747 (-)NCBIHuRef
CHM1_15132,964,711 - 132,994,524 (-)NCBICHM1_1
T2T-CHM13v2.05134,717,969 - 134,749,722 (-)NCBIT2T-CHM13v2.0
Ppp2ca
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391151,989,651 - 52,013,576 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1151,989,508 - 52,018,605 (+)EnsemblGRCm39 Ensembl
GRCm381152,098,824 - 52,122,749 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1152,098,681 - 52,127,778 (+)EnsemblGRCm38mm10GRCm38
MGSCv371151,912,326 - 51,936,251 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361151,942,247 - 51,966,172 (+)NCBIMGSCv36mm8
Celera1156,667,217 - 56,691,076 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1131.86NCBI
Ppp2ca
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81036,856,534 - 36,878,789 (+)NCBIGRCr8
mRatBN7.21036,358,110 - 36,377,864 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1036,358,101 - 36,377,862 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1041,052,411 - 41,072,171 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01040,542,376 - 40,562,136 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01036,046,099 - 36,065,860 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01037,534,449 - 37,554,861 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1037,535,871 - 37,554,664 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01037,324,233 - 37,343,985 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41037,621,256 - 37,641,008 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11037,627,685 - 37,647,436 (+)NCBI
Celera1035,713,154 - 35,732,937 (+)NCBICelera
Cytogenetic Map10q22NCBI
PPP2CA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24129,495,422 - 129,527,796 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15127,634,159 - 127,667,358 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05129,599,606 - 129,629,312 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15135,751,964 - 135,761,395 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5135,751,958 - 135,765,786 (-)Ensemblpanpan1.1panPan2
PPP2CA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11122,388,327 - 22,410,052 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1122,385,257 - 22,410,052 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1121,134,537 - 21,156,029 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01123,189,481 - 23,211,243 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1123,188,436 - 23,211,451 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11121,889,485 - 21,911,229 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01121,754,643 - 21,776,444 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01122,397,162 - 22,418,841 (-)NCBIUU_Cfam_GSD_1.0
Ppp2ca
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213114,028,481 - 114,052,523 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366471,031,119 - 1,055,149 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366471,031,118 - 1,055,961 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP2CA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2136,494,541 - 136,522,646 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12136,497,780 - 136,522,630 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22142,095,024 - 142,123,724 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PPP2CA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12336,999,110 - 37,028,916 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2336,997,078 - 37,029,280 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603440,904,228 - 40,936,193 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppp2ca
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473338,012,392 - 38,036,914 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473338,012,694 - 38,033,745 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000023053   ⟹   ENSCLAP00000022842
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554085,433,268 - 5,460,361 (-)Ensembl
RefSeq Acc Id: XM_005376137   ⟹   XP_005376194
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554085,435,117 - 5,460,361 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005376194 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000001618.1
  ENSCLAP00000022842
  ENSCLAP00000022842.1
RefSeq Acc Id: XP_005376194   ⟸   XM_005376137
- UniProtKB: A0A8C2YTU5 (UniProtKB/TrEMBL),   A0A8C2YIQ9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000022842   ⟸   ENSCLAT00000023053

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000001213 UniProtKB/TrEMBL
  ENSCLAG00000015668 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000001661.1 UniProtKB/TrEMBL
  ENSCLAT00000023053 ENTREZGENE
  ENSCLAT00000023053.1 UniProtKB/TrEMBL
Gene3D-CATH 3.60.21.10 UniProtKB/TrEMBL
InterPro Calcineurin-like_PHP_ApaH UniProtKB/TrEMBL
  Metallo-depent_PP-like UniProtKB/TrEMBL
  PPA2-like UniProtKB/TrEMBL
  Ser/Thr-sp_prot-phosphatase UniProtKB/TrEMBL
NCBI Gene Ppp2ca ENTREZGENE
PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A CATALYTIC SUBUNIT ALPHA ISOFORM UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN PHOSPHATASE 2A CATALYTIC SUBUNIT BETA ISOFORM UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED UniProtKB/TrEMBL
Pfam Metallophos UniProtKB/TrEMBL
PRINTS STPHPHTASE UniProtKB/TrEMBL
PROSITE SER_THR_PHOSPHATASE UniProtKB/TrEMBL
SMART PP2Ac UniProtKB/TrEMBL
Superfamily-SCOP SSF56300 UniProtKB/TrEMBL
UniProt A0A8C2YIQ9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YTU5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Ppp2ca  protein phosphatase 2 catalytic subunit alpha    protein phosphatase 2, catalytic subunit, alpha isozyme  Symbol and/or name change 5135510 APPROVED