Pold3 (DNA polymerase delta 3, accessory subunit) - Rat Genome Database

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Gene: Pold3 (DNA polymerase delta 3, accessory subunit) Chinchilla lanigera
Analyze
Symbol: Pold3
Name: DNA polymerase delta 3, accessory subunit
RGD ID: 8980648
Description: ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); INVOLVED IN DNA biosynthetic process (ortholog); DNA-templated DNA replication (ortholog); error-prone translesion synthesis (ortholog); PARTICIPATES IN mismatch repair pathway; nucleotide excision repair pathway; ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); Colorectal Neoplasms (ortholog); genetic disease (ortholog); FOUND IN delta DNA polymerase complex (ortholog); nucleoplasm (ortholog); zeta DNA polymerase complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DNA polymerase delta subunit 3; polymerase (DNA-directed), delta 3, accessory subunit
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541417,064,379 - 17,111,946 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Pold3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541417,064,379 - 17,111,946 (-)NCBIChiLan1.0ChiLan1.0
POLD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381174,592,582 - 74,669,341 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1174,493,851 - 74,669,117 (+)EnsemblGRCh38hg38GRCh38
GRCh371174,303,627 - 74,354,121 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361173,981,277 - 74,031,413 (+)NCBINCBI36Build 36hg18NCBI36
Build 341173,981,276 - 74,031,413NCBI
Celera1171,610,396 - 71,660,533 (+)NCBICelera
Cytogenetic Map11q13.4NCBI
HuRef1170,599,723 - 70,650,306 (+)NCBIHuRef
CHM1_11174,187,146 - 74,237,663 (+)NCBICHM1_1
T2T-CHM13v2.01174,521,975 - 74,598,819 (+)NCBIT2T-CHM13v2.0
Pold3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39799,731,317 - 99,770,709 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl799,731,318 - 99,770,772 (-)EnsemblGRCm39 Ensembl
GRCm387100,082,110 - 100,121,502 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7100,082,111 - 100,121,565 (-)EnsemblGRCm38mm10GRCm38
MGSCv377107,230,623 - 107,270,010 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36799,956,196 - 99,995,583 (-)NCBIMGSCv36mm8
Celera7100,414,045 - 100,453,506 (-)NCBICelera
Cytogenetic Map7E2NCBI
cM Map754.32NCBI
Pold3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81163,830,217 - 163,870,015 (-)NCBIGRCr8
mRatBN7.21154,417,893 - 154,456,687 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1154,418,084 - 154,456,665 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1162,413,734 - 162,450,977 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01169,593,883 - 169,631,126 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01162,467,405 - 162,504,648 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01165,085,142 - 165,122,385 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1165,083,622 - 165,123,455 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01171,284,462 - 171,323,431 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41157,453,059 - 157,490,563 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11157,531,464 - 157,568,969 (-)NCBI
Celera1152,503,750 - 152,541,022 (-)NCBICelera
Cytogenetic Map1q32NCBI
POLD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2975,534,437 - 75,584,709 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11176,578,808 - 76,629,128 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01169,665,642 - 69,715,879 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11172,969,721 - 73,020,585 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1172,969,844 - 73,018,295 (+)Ensemblpanpan1.1panPan2
POLD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12123,753,918 - 23,805,306 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2123,754,278 - 23,802,104 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2123,519,367 - 23,570,387 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02123,956,617 - 24,007,701 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2123,956,621 - 24,004,692 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12123,754,106 - 23,805,168 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02123,951,370 - 24,002,432 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02123,868,959 - 23,920,001 (-)NCBIUU_Cfam_GSD_1.0
Pold3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494761,944,366 - 61,985,100 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364983,543,914 - 3,585,934 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364983,544,001 - 3,584,456 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POLD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl98,906,462 - 8,958,318 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.198,906,491 - 8,956,845 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.299,744,070 - 9,794,752 (+)NCBISscrofa10.2Sscrofa10.2susScr3
POLD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1165,832,887 - 65,885,671 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604359,949,148 - 60,027,799 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pold3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248172,467,803 - 2,513,267 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248172,465,809 - 2,538,723 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005379914   ⟹   XP_005379971
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541417,064,379 - 17,111,946 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005379915   ⟹   XP_005379972
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541417,064,379 - 17,110,460 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005379971 (Get FASTA)   NCBI Sequence Viewer  
  XP_005379972 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000020810
  ENSCLAP00000020810.1
Reference Protein Sequences
RefSeq Acc Id: XP_005379971   ⟸   XM_005379914
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VUE8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005379972   ⟸   XM_005379915
- Peptide Label: isoform X2
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000014255 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000021010 ENTREZGENE
  ENSCLAT00000021010.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.1030.20 UniProtKB/TrEMBL
InterPro POLD3 UniProtKB/TrEMBL
  POLD3_sf UniProtKB/TrEMBL
NCBI Gene Pold3 ENTREZGENE
PANTHER DNA POLYMERASE DELTA SUBUNIT 3 UniProtKB/TrEMBL
  PTHR17598 UniProtKB/TrEMBL
Pfam CDC27 UniProtKB/TrEMBL
UniProt A0A8C2VUE8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-07-26 Pold3  DNA polymerase delta 3, accessory subunit    polymerase (DNA-directed), delta 3, accessory subunit  Symbol and/or name change 5135510 APPROVED