Cbx5 (chromobox 5) - Rat Genome Database

Name: Cbx5
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Cbx5 (chromobox 5) Chinchilla lanigera

Analyze

Symbol:

Cbx5

Name:

chromobox 5

RGD ID:

8888683

Description:

ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription factor binding (ortholog); histone deacetylase binding (ortholog); INVOLVED IN DNA damage response (ortholog); negative regulation of DNA-templated transcription (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH Colorectal Neoplasms (ortholog); lung adenocarcinoma (ortholog); Lung Neoplasms (ortholog); FOUND IN chromocenter (ortholog); chromosome, telomeric region (ortholog); heterochromatin (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

chromobox homolog 5; chromobox protein homolog 5

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CBX5 (chromobox 5)	NCBI	Ortholog
Mus musculus (house mouse):	Cbx5 (chromobox 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Cbx5 (chromobox 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CBX5 (chromobox 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CBX5 (chromobox 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cbx5 (chromobox 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CBX5 (chromobox 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CBX5 (chromobox 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cbx5 (chromobox 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955458	1,486,951 - 1,505,653 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955458	1,486,951 - 1,529,649 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Colorectal Neoplasms (ISO)

lung adenocarcinoma (ISO)

Lung Neoplasms (ISO)

Neoplasm Metastasis (ISO)

Neurodevelopmental Disorders (ISO)

prostate cancer (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA damage response (ISO)

negative regulation of DNA-templated transcription (ISO)

negative regulation of transcription by RNA polymerase II (ISO)

Cellular Component

chromocenter (ISO)

chromosome, telomeric region (ISO)

heterochromatin (ISO)

histone deacetylase complex (ISO)

histone methyltransferase complex (ISO)

kinetochore (ISO)

nucleolus (ISO)

nucleoplasm (ISO)

nucleus (ISO)

pericentric heterochromatin (ISO)

PML body (ISO)

protein-containing complex (ISO)

ribonucleoprotein complex (ISO)

site of DNA damage (ISO)

transcription repressor complex (ISO)

Molecular Function

chromatin binding (ISO)

DNA-binding transcription factor binding (ISO)

histone deacetylase binding (ISO)

identical protein binding (ISO)

methylated histone binding (ISO)

protein binding (ISO)

protein-containing complex binding (ISO)

protein-macromolecule adaptor activity (ISO)

ribonucleoprotein complex binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

histone modification pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Cbx5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955458	1,486,951 - 1,505,653 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955458	1,486,951 - 1,529,649 (-)	NCBI	ChiLan1.0	ChiLan1.0

CBX5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	54,230,942 - 54,280,122 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	54,230,942 - 54,280,133 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	54,624,726 - 54,673,906 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	52,921,677 - 52,960,151 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	52,921,677 - 52,960,151	NCBI
Celera	12	54,276,743 - 54,325,894 (-)	NCBI		Celera
Cytogenetic Map	12	q13.13	NCBI
HuRef	12	51,663,959 - 51,713,186 (-)	NCBI		HuRef
CHM1_1	12	54,591,455 - 54,640,653 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	54,197,516 - 54,246,699 (-)	NCBI		T2T-CHM13v2.0

Cbx5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	103,099,973 - 103,148,337 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	103,099,971 - 103,148,243 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	103,191,546 - 103,239,904 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	103,191,544 - 103,239,816 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	103,021,977 - 103,070,247 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	103,019,130 - 103,043,372 (-)	NCBI		MGSCv36	mm8
Celera	15	105,352,806 - 105,401,405 (-)	NCBI		Celera
Cytogenetic Map	15	F3	NCBI
cM Map	15	58.34	NCBI

Cbx5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	136,203,827 - 136,254,575 (-)	NCBI		GRCr8
mRatBN7.2	7	134,333,165 - 134,376,102 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	134,331,335 - 134,375,022 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	136,088,404 - 136,105,880 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	138,317,781 - 138,335,258 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	138,303,847 - 138,321,314 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	144,819,673 - 144,865,014 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	144,819,420 - 144,837,583 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	142,605,275 - 142,647,738 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	142,107,922 - 142,125,543 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	142,187,961 - 142,229,833 (-)	NCBI
Celera	7	130,758,832 - 130,776,255 (-)	NCBI		Celera
Cytogenetic Map	7	q36	NCBI

CBX5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	39,891,136 - 39,948,939 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	39,887,905 - 39,945,708 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	34,463,826 - 34,521,656 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	35,189,095 - 35,246,660 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	35,218,239 - 35,236,009 (+)	Ensembl	panpan1.1		panPan2

CBX5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	1,020,500 - 1,058,027 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	1,039,594 - 1,049,788 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	45,197,396 - 45,234,943 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	1,017,407 - 1,054,956 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	1,017,441 - 1,054,183 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	1,036,373 - 1,073,913 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	1,017,977 - 1,055,663 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	45,601,201 - 45,638,748 (-)	NCBI		UU_Cfam_GSD_1.0

Cbx5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	61,683,589 - 61,723,060 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936512	11,450,060 - 11,480,727 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936512	11,441,770 - 11,480,924 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CBX5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	19,446,086 - 19,484,463 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	19,446,083 - 19,484,527 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	20,290,445 - 20,329,012 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CBX5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	50,350,440 - 50,396,595 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	50,353,638 - 50,396,608 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	195,645,487 - 195,688,609 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cbx5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624904	2,276,036 - 2,296,706 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624904	2,273,054 - 2,313,723 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005397212	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005397213	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005397215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013520945	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01047184	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01047185	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01047186	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01047187	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01047188	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01009957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000020836 ⟹ ENSCLAP00000020638

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955458	1,486,951 - 1,505,653 (-)	Ensembl

RefSeq Acc Id:

XM_005397212 ⟹ XP_005397269

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955458	1,486,951 - 1,529,649 (-)	NCBI

Sequence:

show sequence

TTGCGCAGGCGTCATGGGCGGAGAAAGGGTCCGGTTCCAGGATTAGTTGCGCAGGCGCAGGGAA
GGGTCCGTTTTGGCGGGCGGTTGGCGTTGCGCAGAAGGCGGCGGCAGCGGTGGCCTGTGGTGCG
GCCTCACCACAGAGGAACAGGGCGGCCGTTAGTGTGAGTGATCGCTCTCGATCCCGGGTTCTTT
GGAGCTGTGCAGCCGAAGAGTTTGACTGGCGAGTGTGTAGGCCAATTGGGTCTGCCTCGAGCTG
CCGAGTGATCGGCCCTTGGGCCATCGGAATGTGGGAGGCGGGTTTTCCCCTCCTGAGCAGCGTC
TCACTGAGCCAATGAGCACGAAGCGCGCGGAACCCGGTGGCCTTAGTCCTTCAGGTGGAACAGT
GTGCGACATGGGAAAGAAAACCAAGAGGACAGCTGACAGTTCTTCTTCCGAGGACGAAGAGGAG
TATGTCGTGGAGAAAGTGTTAGACAGGCGTGTGGTTAAGGGGCAAGTGGAATATCTGCTGAAGT
GGAAAGGCTTTTCCGAGGAGCATAATACGTGGGAACCAGAGAAAAACTTGGATTGCCCTGAACT
AATTTCTGAGTTTATGAAAAAGTATAAGAAGATGAAGGAGGGTGAAAATAATAAACCCAGGGAG
AAGTCAGAAGGTAACAAGAGGAAATCCAATTTCTCGAACAGTGCTGATGATATCAAATCCAAGA
AAAAGAGAGAGCAAAGCAATGATATTGCACGGGGCTTTGAGAGAGGGCTGGAACCAGAAAAGAT
TATTGGAGCAACAGATTCCTGTGGTGATTTAATGTTCCTGATGAAATGGAAAGACACAGATGAG
GCTGACCTGGTTCTTGCAAAAGAAGCTAATGTGAAGTGTCCACAGATTGTGATAGCATTTTATG
AAGAGAGACTGACGTGGCATGCATATCCTGAGGATGCGGAAAACAAAGAGAAAGAAACCGCAAA
GAGCTAAAGCAGGGGGTGGTCTCTGTCATTTCTCTTTGTACATAATCCATTCACCTCCCTGCCT
CCTCTCCCTTCTACCCAACCCCTTTATCCTAAACACATCCATAAAAATGTGCTTATCACTGTGC
TCCGCAGGAGAAA

hide sequence

RefSeq Acc Id:

XM_005397213 ⟹ XP_005397270

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955458	1,486,951 - 1,529,647 (-)	NCBI

Sequence:

show sequence

GCGCAGGCGTCATGGGCGGAGAAAGGGTCCGGTTCCAGGATTAGTTGCGCAGGCGCAGGGAAGG
GTCCGTTTTGGCGGGCGGTTGGCGTTGCGCAGAAGGCGGCGGCAGCGGTGGCCTGTGGTGCGGC
CTCACCACAGAGGAACAGGGCGGCCGTTAGTGTGAGTGATCGCTCTCGATCCCGGGAACCCGGT
GGCCTTAGTCCTTCAGGTGGAACAGTGTGCGACATGGGAAAGAAAACCAAGAGGACAGCTGACA
GTTCTTCTTCCGAGGACGAAGAGGAGTATGTCGTGGAGAAAGTGTTAGACAGGCGTGTGGTTAA
GGGGCAAGTGGAATATCTGCTGAAGTGGAAAGGCTTTTCCGAGGAGCATAATACGTGGGAACCA
GAGAAAAACTTGGATTGCCCTGAACTAATTTCTGAGTTTATGAAAAAGTATAAGAAGATGAAGG
AGGGTGAAAATAATAAACCCAGGGAGAAGTCAGAAGGTAACAAGAGGAAATCCAATTTCTCGAA
CAGTGCTGATGATATCAAATCCAAGAAAAAGAGAGAGCAAAGCAATGATATTGCACGGGGCTTT
GAGAGAGGGCTGGAACCAGAAAAGATTATTGGAGCAACAGATTCCTGTGGTGATTTAATGTTCC
TGATGAAATGGAAAGACACAGATGAGGCTGACCTGGTTCTTGCAAAAGAAGCTAATGTGAAGTG
TCCACAGATTGTGATAGCATTTTATGAAGAGAGACTGACGTGGCATGCATATCCTGAGGATGCG
GAAAACAAAGAGAAAGAAACCGCAAAGAGCTAAAGCAGGGGGTGGTCTCTGTCATTTCTCTTTG
TACATAATCCATTCACCTCCCTGCCTCCTCTCCCTTCTACCCAACCCCTTTATCCTAAACACAT
CCATAAAAATGTGCTTATCACTGTGCTCCGCAGGAGAAA

hide sequence

RefSeq Acc Id:

XM_005397215 ⟹ XP_005397272

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955458	1,486,951 - 1,505,170 (-)	NCBI

Sequence:

show sequence

AGTGGCGCCCTGGCAGCTGGGTGGGGGCGGGGGAGCTGCCAGCCCGCCAAGCCCCAGACCTGGG
AGGGAAGGCCCCTCCTGTTAGCCCAGAGGGAAAGAAAGAACTGGGGCGATCCGGAACCCGGTGG
CCTTAGTCCTTCAGGTGGAACAGTGTGCGACATGGGAAAGAAAACCAAGAGGACAGCTGACAGT
TCTTCTTCCGAGGACGAAGAGGAGTATGTCGTGGAGAAAGTGTTAGACAGGCGTGTGGTTAAGG
GGCAAGTGGAATATCTGCTGAAGTGGAAAGGCTTTTCCGAGGAGCATAATACGTGGGAACCAGA
GAAAAACTTGGATTGCCCTGAACTAATTTCTGAGTTTATGAAAAAGTATAAGAAGATGAAGGAG
GGTGAAAATAATAAACCCAGGGAGAAGTCAGAAGGTAACAAGAGGAAATCCAATTTCTCGAACA
GTGCTGATGATATCAAATCCAAGAAAAAGAGAGAGCAAAGCAATGATATTGCACGGGGCTTTGA
GAGAGGGCTGGAACCAGAAAAGATTATTGGAGCAACAGATTCCTGTGGTGATTTAATGTTCCTG
ATGAAATGGAAAGACACAGATGAGGCTGACCTGGTTCTTGCAAAAGAAGCTAATGTGAAGTGTC
CACAGATTGTGATAGCATTTTATGAAGAGAGACTGACGTGGCATGCATATCCTGAGGATGCGGA
AAACAAAGAGAAAGAAACCGCAAAGAGCTAAAGCAGGGGGTGGTCTCTGTCATTTCTCTTTGTA
CATAATCCATTCACCTCCCTGCCTCCTCTCCCTTCTACCCAACCCCTTTATCCTAAACACATCC
ATAAAAATGTGCTTATCACTGTGCTCCGCAGGAGAAA

hide sequence

RefSeq Acc Id:

XM_013520945 ⟹ XP_013376399

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955458	1,486,951 - 1,505,016 (-)	NCBI

Sequence:

show sequence

GGGCCTTTCTTCTGCATGAAGGTATAAAGGGGAATTTTCCTCTTCCCTTCCTCAAACTGAAGAA
CACATATGTAAATCTGTTTTTCCTGGTGAAGCAGGGGAGACCGTAGCCACAATGCTTCCCTGCA
TGCGTCTAACATGGGGCTGGTTTTAACCCCAGCGCTCTGACCTAAACTGCTCAGCTCCCGGAAA
TTCCAAGGAACCCGGTGGCCTTAGTCCTTCAGGTGGAACAGTGTGCGACATGGGAAAGAAAACC
AAGAGGACAGCTGACAGTTCTTCTTCCGAGGACGAAGAGGAGTATGTCGTGGAGAAAGTGTTAG
ACAGGCGTGTGGTTAAGGGGCAAGTGGAATATCTGCTGAAGTGGAAAGGCTTTTCCGAGGAGCA
TAATACGTGGGAACCAGAGAAAAACTTGGATTGCCCTGAACTAATTTCTGAGTTTATGAAAAAG
TATAAGAAGATGAAGGAGGGTGAAAATAATAAACCCAGGGAGAAGTCAGAAGGTAACAAGAGGA
AATCCAATTTCTCGAACAGTGCTGATGATATCAAATCCAAGAAAAAGAGAGAGCAAAGCAATGA
TATTGCACGGGGCTTTGAGAGAGGGCTGGAACCAGAAAAGATTATTGGAGCAACAGATTCCTGT
GGTGATTTAATGTTCCTGATGAAATGGAAAGACACAGATGAGGCTGACCTGGTTCTTGCAAAAG
AAGCTAATGTGAAGTGTCCACAGATTGTGATAGCATTTTATGAAGAGAGACTGACGTGGCATGC
ATATCCTGAGGATGCGGAAAACAAAGAGAAAGAAACCGCAAAGAGCTAAAGCAGGGGGTGGTCT
CTGTCATTTCTCTTTGTACATAATCCATTCACCTCCCTGCCTCCTCTCCCTTCTACCCAACCCC
TTTATCCTAAACACATCCATAAAAATGTGCTTATCACTGTGCTCCGCAGGAGAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005397269	(Get FASTA)	NCBI Sequence Viewer
	XP_005397270	(Get FASTA)	NCBI Sequence Viewer
	XP_005397272	(Get FASTA)	NCBI Sequence Viewer
	XP_013376399	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000020638
	ENSCLAP00000020638.1

RefSeq Acc Id:

XP_005397269 ⟸ XM_005397212

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSTKRAEPGGLSPSGGTVCDMGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGF
SEEHNTWEPEKNLDCPELISEFMKKYKKMKEGENNKPREKSEGNKRKSNFSNSADDIKSKKKRE
QSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERL
TWHAYPEDAENKEKETAKS

hide sequence

RefSeq Acc Id:	XP_005397270 ⟸ XM_005397213
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2VYE6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELIS EFMKKYKKMKEGENNKPREKSEGNKRKSNFSNSADDIKSKKKREQSNDIARGFERGLEPEKIIG ATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPEDAENKEKETAKS hide sequence

RefSeq Acc Id:	XP_005397272 ⟸ XM_005397215
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2VYE6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELIS EFMKKYKKMKEGENNKPREKSEGNKRKSNFSNSADDIKSKKKREQSNDIARGFERGLEPEKIIG ATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPEDAENKEKETAKS hide sequence

RefSeq Acc Id:	XP_013376399 ⟸ XM_013520945
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2VYE6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELIS EFMKKYKKMKEGENNKPREKSEGNKRKSNFSNSADDIKSKKKREQSNDIARGFERGLEPEKIIG ATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPEDAENKEKETAKS hide sequence

RefSeq Acc Id:

ENSCLAP00000020638 ⟸ ENSCLAT00000020836

Protein Domains

Chromo

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000014138	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000020836	ENTREZGENE
	ENSCLAT00000020836.1	UniProtKB/TrEMBL
Gene3D-CATH	2.40.50.40	UniProtKB/TrEMBL
InterPro	Chromo-like_dom_sf	UniProtKB/TrEMBL
	Chromo/chromo_shadow_dom	UniProtKB/TrEMBL
	Chromo_dom_subgr	UniProtKB/TrEMBL
	Chromo_domain	UniProtKB/TrEMBL
	Chromo_shadow_dom	UniProtKB/TrEMBL
	Chromodomain_CS	UniProtKB/TrEMBL
NCBI Gene	Cbx5	ENTREZGENE
PANTHER	CHROMOBOX PROTEIN	UniProtKB/TrEMBL
	CHROMOBOX PROTEIN HOMOLOG 5	UniProtKB/TrEMBL
Pfam	Chromo	UniProtKB/TrEMBL
	Chromo_shadow	UniProtKB/TrEMBL
PRINTS	CHROMODOMAIN	UniProtKB/TrEMBL
PROSITE	CHROMO_1	UniProtKB/TrEMBL
	CHROMO_2	UniProtKB/TrEMBL
SMART	CHROMO	UniProtKB/TrEMBL
	ChSh	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54160	UniProtKB/TrEMBL
UniProt	A0A8C2VYE6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-16	Cbx5	chromobox 5		chromobox homolog 5	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations