Trip12 (thyroid hormone receptor interactor 12) - Rat Genome Database

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Gene: Trip12 (thyroid hormone receptor interactor 12) Chinchilla lanigera
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Symbol: Trip12
Name: thyroid hormone receptor interactor 12
RGD ID: 8766720
Description: ENCODES a protein that exhibits thyroid hormone receptor binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN cellular response to DNA damage stimulus (ortholog); negative regulation of double-strand break repair (ortholog); negative regulation of histone H2A K63-linked ubiquitination (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; ASSOCIATED WITH Clark-Baraitser syndrome (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN nuclear speck (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: E3 ubiquitin-protein ligase TRIP12
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554535,134,016 - 5,271,399 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554535,132,776 - 5,272,250 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Trip12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554535,134,016 - 5,271,399 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554535,132,776 - 5,272,250 (+)NCBIChiLan1.0ChiLan1.0
TRIP12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2229,763,837 - 229,923,239 (-)EnsemblGRCh38hg38GRCh38
GRCh382229,763,837 - 229,923,234 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372230,628,553 - 230,787,902 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362230,340,174 - 230,494,899 (-)NCBINCBI36hg18NCBI36
Build 342230,457,434 - 230,612,160NCBI
Celera2224,407,870 - 224,562,590 (-)NCBI
Cytogenetic Map2q36.3NCBI
HuRef2222,471,564 - 222,626,401 (-)NCBIHuRef
CHM1_12230,634,835 - 230,792,988 (-)NCBICHM1_1
Trip12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39184,698,910 - 84,818,285 (-)NCBIGRCm39mm39
GRCm39 Ensembl184,698,910 - 84,818,237 (-)Ensembl
GRCm38184,721,189 - 84,850,004 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl184,721,189 - 84,840,516 (-)EnsemblGRCm38mm10GRCm38
MGSCv37184,717,764 - 84,835,879 (-)NCBIGRCm37mm9NCBIm37
MGSCv36184,600,221 - 84,718,314 (-)NCBImm8
Celera184,781,289 - 84,899,379 (-)NCBICelera
Cytogenetic Map1C5NCBI
Trip12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2985,916,691 - 86,043,312 (-)NCBI
Rnor_6.0 Ensembl992,305,051 - 92,435,365 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0992,305,059 - 92,435,388 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0992,038,603 - 92,167,963 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4983,961,411 - 84,085,077 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1984,145,673 - 84,268,469 (-)NCBI
Celera983,343,045 - 83,465,833 (-)NCBICelera
Cytogenetic Map9q35NCBI
TRIP12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B235,817,633 - 235,979,780 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B235,820,182 - 235,979,780 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B117,013,343 - 117,175,296 (-)NCBIMhudiblu_PPA_v0panPan3
TRIP12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12542,060,103 - 42,208,326 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2542,060,991 - 42,208,054 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2542,683,739 - 42,830,753 (-)NCBI
ROS_Cfam_1.02542,314,008 - 42,461,218 (-)NCBI
UMICH_Zoey_3.12542,245,230 - 42,392,136 (-)NCBI
UNSW_CanFamBas_1.02542,085,737 - 42,233,226 (-)NCBI
UU_Cfam_GSD_1.02542,259,135 - 42,406,205 (-)NCBI
Trip12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303184,249,264 - 184,400,199 (-)NCBI
SpeTri2.0NW_0049365256,539,234 - 6,690,457 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIP12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15130,787,581 - 130,939,575 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115130,784,567 - 130,940,497 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Pig Cytomap15q21-q26NCBI
TRIP12
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110115,789,978 - 115,946,978 (-)NCBI
ChlSab1.1 Ensembl10115,789,605 - 115,945,753 (-)Ensembl
Vero_WHO_p1.0NW_02366604083,509,692 - 83,667,771 (+)NCBI
Trip12
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248433,589,068 - 3,723,115 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000010012   ⟹   ENSCLAP00000009882
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554535,134,016 - 5,271,399 (+)Ensembl
RefSeq Acc Id: XM_005395422   ⟹   XP_005395479
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554535,134,668 - 5,272,250 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005395424   ⟹   XP_005395481
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554535,134,381 - 5,272,250 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005395425   ⟹   XP_005395482
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554535,132,776 - 5,272,250 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005395426   ⟹   XP_005395483
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554535,134,016 - 5,271,399 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005395427   ⟹   XP_005395484
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554535,134,016 - 5,271,399 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005395428   ⟹   XP_005395485
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554535,134,016 - 5,271,399 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005395429   ⟹   XP_005395486
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554535,134,015 - 5,271,399 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005395430   ⟹   XP_005395487
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554535,134,016 - 5,271,399 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013519820   ⟹   XP_013375274
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554535,135,440 - 5,272,250 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013519821   ⟹   XP_013375275
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554535,133,110 - 5,272,250 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013519822   ⟹   XP_013375276
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554535,134,016 - 5,271,399 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005395482   ⟸   XM_005395425
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005395487   ⟸   XM_005395430
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_005395486   ⟸   XM_005395429
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_005395484   ⟸   XM_005395427
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005395483   ⟸   XM_005395426
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005395485   ⟸   XM_005395428
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_005395481   ⟸   XM_005395424
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005395479   ⟸   XM_005395422
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013375275   ⟸   XM_013519821
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013375276   ⟸   XM_013519822
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_013375274   ⟸   XM_013519820
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000009882   ⟸   ENSCLAT00000010012


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006844 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000009882 ENTREZGENE
Ensembl Transcript ENSCLAT00000010012 ENTREZGENE
NCBI Gene Trip12 ENTREZGENE