Mta3 (metastasis associated 1 family member 3) - Rat Genome Database

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Gene: Mta3 (metastasis associated 1 family member 3) Chinchilla lanigera
Analyze
Symbol: Mta3
Name: metastasis associated 1 family member 3
RGD ID: 8766579
Description: ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN cell population proliferation (ortholog); chromatin remodeling (ortholog); G2/M transition of mitotic cell cycle (ortholog); PARTICIPATES IN CHD family mediated chromatin remodeling pathway; ASSOCIATED WITH Dwarfism (ortholog); Lynch syndrome (ortholog); FOUND IN cytoplasm (ortholog); intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: metastasis associated 1 family, member 3; metastasis-associated protein MTA3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554419,965,500 - 10,108,467 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554419,965,727 - 10,108,467 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
Dwarfism  (ISO)
Lynch syndrome  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Mta3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554419,965,500 - 10,108,467 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554419,965,727 - 10,108,467 (+)NCBIChiLan1.0ChiLan1.0
MTA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38242,494,110 - 42,756,946 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl242,494,569 - 42,756,947 (+)EnsemblGRCh38hg38GRCh38
GRCh37242,721,250 - 42,984,086 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36242,649,175 - 42,789,857 (+)NCBINCBI36Build 36hg18NCBI36
Build 34242,707,321 - 42,848,003NCBI
Celera242,636,184 - 42,775,597 (+)NCBICelera
Cytogenetic Map2p21NCBI
HuRef242,530,841 - 42,670,522 (+)NCBIHuRef
CHM1_1242,725,097 - 42,865,672 (+)NCBICHM1_1
T2T-CHM13v2.0242,499,549 - 42,762,201 (+)NCBIT2T-CHM13v2.0
Mta3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391784,013,483 - 84,131,144 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1784,013,592 - 84,128,945 (+)EnsemblGRCm39 Ensembl
GRCm381783,706,163 - 83,823,715 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1783,706,163 - 83,821,516 (+)EnsemblGRCm38mm10GRCm38
MGSCv371784,105,503 - 84,214,245 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361783,614,535 - 83,723,228 (+)NCBIMGSCv36mm8
Celera1788,058,623 - 88,169,758 (+)NCBICelera
Cytogenetic Map17E4NCBI
cM Map1754.53NCBI
Mta3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8616,619,575 - 16,739,732 (-)NCBIGRCr8
mRatBN7.2610,867,028 - 10,987,221 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl610,867,011 - 10,986,883 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx611,170,306 - 11,281,199 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0611,479,638 - 11,590,535 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0610,992,528 - 11,103,617 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.066,904,449 - 7,036,929 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl66,908,684 - 7,031,828 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.066,858,988 - 6,986,437 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.467,060,212 - 7,180,405 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.167,060,211 - 7,158,087 (+)NCBI
Celera610,573,980 - 10,694,134 (-)NCBICelera
Cytogenetic Map6q12NCBI
MTA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21283,623,675 - 83,913,667 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A83,638,109 - 83,917,640 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A42,593,721 - 42,847,045 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A43,444,119 - 43,694,314 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A43,513,514 - 43,694,314 (+)Ensemblpanpan1.1panPan2
MTA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11734,288,796 - 34,301,636 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1733,899,194 - 34,072,464 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01734,897,656 - 35,043,556 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11734,022,785 - 34,196,744 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01734,038,500 - 34,258,846 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01734,302,876 - 34,476,917 (+)NCBIUU_Cfam_GSD_1.0
Mta3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629237,563,695 - 37,705,245 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365088,989,681 - 9,132,722 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365088,989,695 - 9,132,694 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl397,601,412 - 97,782,863 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1397,601,403 - 97,782,868 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23103,872,735 - 103,917,631 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MTA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11464,495,903 - 64,755,500 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1464,500,593 - 64,684,309 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604547,152,448 - 47,411,044 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mta3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473824,247,752 - 24,403,234 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005390920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013517591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013517592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01037053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01037054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01037055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01037056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01037057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01037058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01037059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01037060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01037061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01037062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01037063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01037064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01037065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01037066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01037067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01037068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01037069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01037070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01037071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBCE01044977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBCQ01098946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCLAT00000005530   ⟹   ENSCLAP00000005433
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554419,965,500 - 10,093,640 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000005531   ⟹   ENSCLAP00000005434
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554419,965,725 - 10,083,475 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000005532   ⟹   ENSCLAP00000005435
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544110,032,375 - 10,089,988 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000005533   ⟹   ENSCLAP00000005436
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544110,073,353 - 10,108,467 (+)Ensembl
RefSeq Acc Id: XM_005390920   ⟹   XP_005390977
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554419,965,727 - 10,108,467 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013517591   ⟹   XP_013373045
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554419,965,727 - 10,108,467 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013517592   ⟹   XP_013373046
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554419,965,727 - 10,083,475 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005390977   ⟸   XM_005390920
- Peptide Label: isoform X2
- UniProtKB: A0A8C2UU97 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373045   ⟸   XM_013517591
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UU97 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373046   ⟸   XM_013517592
- Peptide Label: isoform X3
- UniProtKB: A0A8C2YKI6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000005433   ⟸   ENSCLAT00000005530
Ensembl Acc Id: ENSCLAP00000005436   ⟸   ENSCLAT00000005533
Ensembl Acc Id: ENSCLAP00000005435   ⟸   ENSCLAT00000005532
Ensembl Acc Id: ENSCLAP00000005434   ⟸   ENSCLAT00000005531
Protein Domains
BAH   ELM2   GATA-type   SANT


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003852 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000005530 ENTREZGENE
  ENSCLAT00000005530.1 UniProtKB/TrEMBL
  ENSCLAT00000005531 ENTREZGENE
  ENSCLAT00000005531.1 UniProtKB/TrEMBL
  ENSCLAT00000005532.1 UniProtKB/TrEMBL
  ENSCLAT00000005533.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.490 UniProtKB/TrEMBL
  4.10.1240.50 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro BAH_dom UniProtKB/TrEMBL
  BAH_sf UniProtKB/TrEMBL
  ELM2_dom UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/TrEMBL
  MIER/MTA UniProtKB/TrEMBL
  MTA1_R1 UniProtKB/TrEMBL
  SANT/Myb UniProtKB/TrEMBL
  SANT_dom UniProtKB/TrEMBL
  Znf_GATA UniProtKB/TrEMBL
NCBI Gene Mta3 ENTREZGENE
PANTHER METASTASIS-ASSOCIATED PROTEIN MTA3 UniProtKB/TrEMBL
  PTHR10865 UniProtKB/TrEMBL
Pfam BAH UniProtKB/TrEMBL
  ELM2 UniProtKB/TrEMBL
  GATA UniProtKB/TrEMBL
  MTA_R1 UniProtKB/TrEMBL
  Myb_DNA-binding UniProtKB/TrEMBL
PROSITE BAH UniProtKB/TrEMBL
  ELM2 UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
SMART BAH UniProtKB/TrEMBL
  ELM2 UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
  ZnF_GATA UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0A8C2UU97 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2UUG8_CHILA UniProtKB/TrEMBL
  A0A8C2YKI6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YKJ9_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Mta3  metastasis associated 1 family member 3    metastasis associated 1 family, member 3  Symbol and/or name change 5135510 APPROVED