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Gene: Kdm1b (lysine demethylase 1B) Chinchilla lanigera

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Symbol:

Kdm1b

Name:

lysine demethylase 1B

RGD ID:

8818133

Description:

ENCODES a protein that exhibits FAD binding (ortholog); FAD-dependent H3K4me/H3K4me3 demethylase activity (ortholog); flavin adenine dinucleotide binding (ortholog); INVOLVED IN epigenetic programing of female pronucleus (ortholog); genomic imprinting (ortholog); transcription initiation-coupled chromatin remodeling (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH atrial fibrillation (ortholog); retinoblastoma (ortholog); FOUND IN chromatin (ortholog); nucleoplasm (ortholog); nucleosome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

lysine (K)-specific demethylase 1B; lysine-specific histone demethylase 1B

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	KDM1B (lysine demethylase 1B)	NCBI	Ortholog
Mus musculus (house mouse):	Kdm1b (lysine (K)-specific demethylase 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Kdm1b (lysine demethylase 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	KDM1B (lysine demethylase 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	KDM1B (lysine demethylase 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Kdm1b (lysine demethylase 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	KDM1B (lysine demethylase 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	KDM1B (lysine demethylase 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Kdm1b (lysine demethylase 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

NCBI Annotation Information:

Annotation category: partial on reference assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955483	8,002,577 - 8,052,486 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955483	8,000,862 - 8,052,486 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

atrial fibrillation (ISO)

retinoblastoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

epigenetic programing of female pronucleus (ISO)

genomic imprinting (ISO)

transcription initiation-coupled chromatin remodeling (ISO)

Cellular Component

chromatin (ISO)

nucleoplasm (ISO)

nucleosome (ISO)

nucleus (ISO)

Molecular Function

FAD binding (ISO)

FAD-dependent H3K4me/H3K4me3 demethylase activity (ISO)

flavin adenine dinucleotide binding (ISO)

histone binding (ISO)

histone H3K4 demethylase activity (ISO)

histone H3K4me/H3K4me2/H3K4me3 demethylase activity (ISO)

protein binding (ISO)

zinc ion binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

histone modification pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Kdm1b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955483	8,002,577 - 8,052,486 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955483	8,000,862 - 8,052,486 (-)	NCBI	ChiLan1.0	ChiLan1.0

KDM1B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	18,155,422 - 18,223,854 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	18,155,329 - 18,223,854 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	18,155,653 - 18,224,085 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	18,263,598 - 18,332,063 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	18,263,661 - 18,332,063	NCBI
Celera	6	19,393,595 - 19,462,052 (+)	NCBI		Celera
Cytogenetic Map	6	p22.3	NCBI
HuRef	6	18,099,960 - 18,168,421 (+)	NCBI		HuRef
CHM1_1	6	18,158,209 - 18,226,680 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	18,027,575 - 18,095,996 (+)	NCBI		T2T-CHM13v2.0

Kdm1b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	47,196,849 - 47,238,085 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	47,196,975 - 47,238,755 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	47,043,373 - 47,085,279 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	47,043,499 - 47,085,279 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	47,138,908 - 47,179,982 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	47,054,542 - 47,095,572 (+)	NCBI		MGSCv36	mm8
Celera	13	48,128,158 - 48,169,189 (+)	NCBI		Celera
Cytogenetic Map	13	A5	NCBI
cM Map	13	24.5	NCBI

Kdm1b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	17,809,232 - 17,850,141 (-)	NCBI		GRCr8
mRatBN7.2	17	17,602,961 - 17,643,865 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	17,602,961 - 17,643,800 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	17,489,102 - 17,529,009 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	19,092,959 - 19,132,866 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	17,416,219 - 17,456,126 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	17,987,972 - 18,028,808 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	17,987,972 - 18,028,808 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	19,908,417 - 19,948,376 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	23,655,643 - 23,695,480 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	23,657,302 - 23,693,673 (-)	NCBI
Celera	17	17,314,243 - 17,353,918 (-)	NCBI		Celera
Cytogenetic Map	17	p14	NCBI

KDM1B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	32,814,158 - 32,883,255 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	28,799,692 - 28,868,520 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	18,002,763 - 18,071,598 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	18,355,907 - 18,425,552 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	18,355,907 - 18,425,552 (+)	Ensembl	panpan1.1		panPan2

KDM1B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	35	16,954,483 - 17,014,261 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	35	16,921,095 - 17,012,527 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	35	16,903,851 - 16,963,895 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	35	17,060,757 - 17,120,956 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	35	17,026,903 - 17,120,943 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	35	16,873,877 - 16,933,805 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	35	16,931,039 - 16,991,036 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	35	18,262,308 - 18,322,552 (+)	NCBI		UU_Cfam_GSD_1.0

Kdm1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	7,766,660 - 7,809,496 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936552	3,921,490 - 3,962,648 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936552	3,921,217 - 3,964,281 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

KDM1B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	13,845,942 - 13,901,255 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	13,846,283 - 13,902,912 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	14,587,984 - 14,642,979 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

KDM1B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	53,919,859 - 53,987,326 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	53,921,702 - 53,987,124 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	18,379,457 - 18,447,162 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Kdm1b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624756	8,449,585 - 8,506,858 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624756	8,447,780 - 8,506,870 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005403391	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01057823	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCE01175840	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01004261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000002420 ⟹ ENSCLAP00000002369

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955483	8,002,577 - 8,052,486 (-)	Ensembl

RefSeq Acc Id:

XM_005403391 ⟹ XP_005403448

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955483	8,000,862 - 8,052,486 (-)	NCBI

Sequence:

show sequence

GGAAGCGGCGGCGGCGGCGGCCGAGCGGGGCTGCGGCGGGCTGCGCGGCGGGTCCCGCGGTCCA
GGGCGCACACGGGCTCTCGGTGCTCCGAGGTGGGCGGCGCGCTTTTCAGCGGGCGGGCGTGGGG
GCGGCGGCGGCGGCTTTCGGGTGACAGCGCCACACAAAGCAGCCGAGCCGGGGTGCGAGCCTTC
CTCCTGCCCTCAGGAGCGCCCATCGCCCCGGCCTCTAGTACAATGGCAGCCCCTCGAGGGAGGT
CAAAGAAAAGAGCAGCGTTTGACCTAACTCCAGATAGCCTTCCTTTGAGGAGCTCCGGTAGGCA
GGCAAAGAAGAAAGTAACAGAGACAGTGGATGAGGACGAAGATGTTGTGTCTGAGAAGAAATAC
CGGAAATGTGAAAAGGCGGGCTGTACAGCAGCATGTCCTGTGTGCTTTGCAAGTGCTTCAGAAA
GATGTGCCAAAAATGGCTACACATCCCGATGGTATCACCTTTCCTGTGGGGAACATTTCTGCAA
CGAATGCTTTGACCATTACTACAGAAGCCATAAAGATGGATATGACAAATATATTACATGGAAA
AAAATTTGGACCAGCAACGGCAAAACAGAACCCAGCCCCAAAGCGTTTATGGCCGACCAGCAGC
TCCCTTACTGGGTGCAGTGTACAAAACCCGAGTGTAGGAAATGGAGGCAGCTTACTAAGGAAAT
CCATCTTACTCCACGGATAGCGAAGACTTACCGGTGTGGTATGAAACCAAATACTATGAAGCCT
GAGAACTCAGATCATTGTTCCCTGCCTGAGGATCTGAGAGTGTCGGAAGTTTCCAACCACTGGT
GGTACTCCATGCTCATCCTACCTCCTTTGCTGAAAGACAGCGTGGCAGCGCCTCTGCTCTCTGC
CTACTACCCGGACTGTGTGGGCATGAGTCCTTCCTGCACCAGCACGAACCGCACTGCCACCACC
GCCTCCGCCACCACCACTGGCAGTGCCAGCCCGGGGCGGCTGGAGCCCTCCAAAGGCGCCCCTT
CTGTGCTTGTTCCAGGCATGAACCGGTACTTCCAGCCTTTCTACCAGCCCAATGAGTGTGGGAA
AGCCCTGTGTGTGCGGCCCGACGTGATGGAACTGGACGAGCTCTATGAGTTTCCTGAGTACTCG
CGAGACCCCACCATGTACCTGGCTCTGAGAAACCTTATCCTCGCCCTGTGGTACACAAACTGCA
AAGAAGCTCTTACTCCTCAGAAATGCATTCCTCATATCATCGTCCGGGGCCTTGTGCGCATTCG
GTGTGTTCAGGAAGTGGAGAGGATACTTTATTTTATGACGAGGAAAGGTCTCATCAACACTGGA
GTTCTTACTGTGGGAGCCGACCAGTATCTTCTTCCTAAAGACTATCACAATAAATCAGTCATCA
TTGTTGGGGCTGGTCCAGCAGGGCTCGCAGCTGCTAGGCAACTACATAACTTTGGAATTAAGGT
GACTGTCCTGGAAGCCAGAGACAGAATTGGAGGCCGAGTGTGGGATGATAAATCTTTCAAAGGT
GTCACGGTGGGAAGAGGACCCCAGATTGTCAATGGCTGTATTAATAACCCAGTAGCACTAATGT
GTGAGCAACTTGGCATCAGCATGCATAAATTTGGAGAAAGATGTGACTTAATTCAGGAAGGTGG
AAGAATAACTGACCCCACCATTGACAAGCGCATGGATTTTCATTTTAATGCCCTCTTGGATGTT
GTCTCTGAGTGGAGGAAGGATAAGACTCAGCTCCAAGATGTCCCTTTAGGAGAAAAGATAGAGG
AGATCTACAGAGCTTTCATTAAGGAATCTGGTATCCAGTTCAGCGAGCTGGAAGGGCAGGTGCT
CCAGTTCCACCTCAGTAACCTGGAATATGCCTGTGGCAGCAACCTCCACCAGGTGTCTGCTCGC
TCCTGGGATCACAATGAATTCTTTGCCCAGTTTGCTGGTGACCACACTCTCCTGACTCCCGGGT
ATTCTGTAATCATTGAGAAATTGGCTGAAGGGCTGGACATTCGGCTCCAGTCTCCGGTCCAGAG
CGTTGATTACACTGGGGATGAAGTGCAGGTCACCACGACAGATGGCACAGGCTATTCTGCACAA
AAGGTATTAGTCACTGTTCCACTGGCCATACTACAGAAAGGTGCCATTCAGTTTAATCCACCAC
TGTCAGAGAAAAAGATGAAAGCTATCAACAGCTTGGGCGCTGGCATCATTGAGAAGATAGCCTT
GCAATTTCCTTACAGATTTTGGGACAGTAAAGTTCAAGGGGCTGACTTTTTTGGTCATGTTCCT
CCCAGTGCCAGCCAGCGGGGCCTCTTTGCTGTATACTATGACATGGATCCCCAGAAGCAGCAGA
GCGTGTTGATGTCGGTGATCACCGGGGAGGCAGTGGCATCAGTTCGGACACTGGATGACAAGCA
GGTGCTGCAGCAGTGCATGGCCACTCTGCGGGAGCTATTCAAGGAGCAGGAAGTCCCAGATCCC
ACAAAGTATTTTGTCACTCGATGGAGCACAGAACCGTGGATCCAGATGGCATACAGTTTTGTGA
AGACCTTTGGGAGCGGAGAGGCCTATGATATCATTGCTGAAGAAATACAAGGAACTGTCTTTTT
TGCTGGCGAGGCAACAAACAGGCATTTCCCACAAACTGTTACAGGGGCTTATTTGAGTGGTGTT
CGAGAAGCAAGCAAGATTGCAGCCTTTTGAATAGAACTGTCTGGATCCAGCTTTGTCCTGTACC
CCAAATGGGAAAGTCTGAAACACAGGTTAAACCTCAGTTTGTGTGTGTGGGTCTGTGTGTGCGC
CTGCTCTGGATAGCAGATCTAAAATGGTTACAGTGTTCTGAAAATGTAAACCCATTTCACCACT
CTGAAAGCACTGCCCCCAAAGTCCTTATGAGCACTTATATTTATTTGCATTTTCCATAGGGCCA
GCTAGTGCTGAAGCCCTCTGGATTTCAGGATGAGGCAGAATATAACCTTAAGTTGAAACCTGGG
TTAGAGTGTTCCATGGCCAGAGGTTCCCTTGAGACTTGTTATTGTGTTGTACTGATGAATTTTC
ATACATTACAGAACTATACATTACAAGTAAATCAAGCAGGAATCATTAACAAACTAGATAAAGC
CATGTGTTCTGTGAAAACTTATCAGTATCTTTACCAATGAGCCTTAATATTTTTATATAGCTCC
AGTGTTAAACCTGTACTTACAATTTAGATAGAACTTTTTTTTGATACACCACGAACTCTCTGAA
GGCAAAATGAAGTTTCTAGAAGACTTTTATATTCTACATATTTTTTCCCATTGGGTATTTAAAA
AGAAACTAAATTCAGGTATTTGTTGTAATGTCTTGTATTTGTGCACTCTGGCAAAACAGCAAAA
ACCTCAATCCTTAAATGGTATAGGGATCATGTAATTGAGACCAGGTTGCTGAATGTGGTCTATG
CTTTAAGCATAAAATACAGCTGTTTTTCTTAAAGCCAAATTTGAGTGGGCAGCAAATTTTTAGT
ATCTTAAATTTTGGCAGCCACTAGCAAAGATCTTGTCAGAATAAAAACCTCATTTTTTAAAACT
GACTCAATCTCTGGGAATATTTTTTGCATAATTATATTTAGTTTTCCATAGGCAGGTCCACTGG
AAAACTGTACAAAAATGTGAGTTATCTTGGTAAATATATTTTATAGGCTGTATCTTATGAGCCT
GACATGGCCAGATCTGCTTTTTCATTTTTGACAAAAAAAATTGTTCAATAAGCATTGGTTTCAG
GGTCTTCAGGATGCCTATTTGGCCAAGAAACTTCAATTTATAGGTTAGAAATGTGCTTTTGTTT
TAAAAAGTCTTTGAACAACTCTTTGAATTGTATTGGTCTGTTTTAATGAAGGGGCTAAAAATGA
CTTTAAAGCCACTTTTCAAAATATTTGGTATTTTTGAGATTTAAAATAAATCAGCTTGTAAGTA
AATAATCTTATGCAAAGAATGTACAGTGAACTTTATAGTTTAGACACTTCTCCATCAAAGTATG
ATACAAAAGAAAGCCAATAGCTGTATATTTCAAAGTGAAGATAGGGAAATGGTGATATTTAGGC
TGAGACTCATTGGTACTGATTAGGATGTATTCTGCTTAAAAGTGTTATGTCATAAGATGTTTAA
TAGCATGTGCTAAGGGATAAATGCAAAATATGTTGTTTGACATGGTTCTTCATGGGCACTTAAA
CTTGTACTGTGCTACCGACAAGCAGAGAAAAACCTACTTCAAGTATAGTACATGTATTTAAAAA
CTTGTTTCTGATTTTTCAAGTGACATACTTCATTTGACATTTTAAGGAACAATGGTACTTTTGA
GTTTCTGAGTTGTTTTCAATGTTATCTGAAGATTTTGTAATTGAGCAGCAGTGAATACAAACGT
TTATGTGACTTCACTTCAGATCATGAGTAGCTGGTTGTGCAAAACTGCTTAATAAAAACTAGAT
CTGTTTTTCAGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005403448	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000002369
	ENSCLAP00000002369.1

RefSeq Acc Id:

XP_005403448 ⟸ XM_005403391

- UniProtKB:

A0A8C2UQS2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAPRGRSKKRAAFDLTPDSLPLRSSGRQAKKKVTETVDEDEDVVSEKKYRKCEKAGCTAACPV
CFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRSHKDGYDKYITWKKIWTSNGKTEPSPK
AFMADQQLPYWVQCTKPECRKWRQLTKEIHLTPRIAKTYRCGMKPNTMKPENSDHCSLPEDLRV
SEVSNHWWYSMLILPPLLKDSVAAPLLSAYYPDCVGMSPSCTSTNRTATTASATTTGSASPGRL
EPSKGAPSVLVPGMNRYFQPFYQPNECGKALCVRPDVMELDELYEFPEYSRDPTMYLALRNLIL
ALWYTNCKEALTPQKCIPHIIVRGLVRIRCVQEVERILYFMTRKGLINTGVLTVGADQYLLPKD
YHNKSVIIVGAGPAGLAAARQLHNFGIKVTVLEARDRIGGRVWDDKSFKGVTVGRGPQIVNGCI
NNPVALMCEQLGISMHKFGERCDLIQEGGRITDPTIDKRMDFHFNALLDVVSEWRKDKTQLQDV
PLGEKIEEIYRAFIKESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGD
HTLLTPGYSVIIEKLAEGLDIRLQSPVQSVDYTGDEVQVTTTDGTGYSAQKVLVTVPLAILQKG
AIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASQRGLFAVYYD
MDPQKQQSVLMSVITGEAVASVRTLDDKQVLQQCMATLRELFKEQEVPDPTKYFVTRWSTEPWI
QMAYSFVKTFGSGEAYDIIAEEIQGTVFFAGEATNRHFPQTVTGAYLSGVREASKIAAF

hide sequence

Ensembl Acc Id:

ENSCLAP00000002369 ⟸ ENSCLAT00000002420

Protein Domains

CW-type SWIRM

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000001718	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000002420	ENTREZGENE
	ENSCLAT00000002420.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.10	UniProtKB/TrEMBL
	3.30.40.100	UniProtKB/TrEMBL
	3.50.50.60	UniProtKB/TrEMBL
	3.90.660.10	UniProtKB/TrEMBL
InterPro	Amino_oxidase	UniProtKB/TrEMBL
	FAD/NAD-bd_sf	UniProtKB/TrEMBL
	Flavin_monoamine_oxidase	UniProtKB/TrEMBL
	Homeobox-like_sf	UniProtKB/TrEMBL
	SWIRM	UniProtKB/TrEMBL
	WH-like_DNA-bd_sf	UniProtKB/TrEMBL
	Znf_CW	UniProtKB/TrEMBL
NCBI Gene	Kdm1b	ENTREZGENE
PANTHER	FLAVIN MONOAMINE OXIDASE	UniProtKB/TrEMBL
	LYSINE-SPECIFIC HISTONE DEMETHYLASE 2	UniProtKB/TrEMBL
Pfam	Amino_oxidase	UniProtKB/TrEMBL
	SWIRM	UniProtKB/TrEMBL
	zf-CW	UniProtKB/TrEMBL
PRINTS	ADXRDTASE	UniProtKB/TrEMBL
PROSITE	SWIRM	UniProtKB/TrEMBL
	ZF_CW	UniProtKB/TrEMBL
Superfamily-SCOP	FAD-linked reductases, C-terminal domain	UniProtKB/TrEMBL
	SSF46689	UniProtKB/TrEMBL
	SSF51905	UniProtKB/TrEMBL
UniProt	A0A8C2UQS2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-03	Kdm1b	lysine demethylase 1B		lysine (K)-specific demethylase 1B	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

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Imported Disease Annotations - CTD

RGD Manual Annotations