Symbol:
Hdac4
Name:
histone deacetylase 4
RGD ID:
9009133
Description:
ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity (ortholog); INVOLVED IN cell population proliferation (ortholog); cellular response to mechanical stimulus (ortholog); cellular response to parathyroid hormone stimulus (ortholog); PARTICIPATES IN calcium/calmodulin dependent kinase 2 signaling pathway; histone modification pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); amyotrophic lateral sclerosis (ortholog); aortic aneurysm (ortholog); FOUND IN A band (ortholog); actomyosin (ortholog); chromatin (ortholog)
Type:
protein-coding
RefSeq Status:
MODEL
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955542 1,629,691 - 1,886,210 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955542 1,629,691 - 1,886,160 (+) NCBI ChiLan1.0 ChiLan1.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Hdac4 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955542 1,629,691 - 1,886,210 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955542 1,629,691 - 1,886,160 (+) NCBI ChiLan1.0 ChiLan1.0
HDAC4 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 2 239,193,331 - 239,195,457 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38 2 239,048,168 - 239,401,649 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 2 239,048,168 - 239,401,654 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 2 239,969,864 - 240,323,343 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 2 239,634,801 - 239,987,580 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 2 239,706,635 - 240,058,897 NCBI Celera 2 233,665,663 - 234,017,808 (-) NCBI Celera Cytogenetic Map 2 q37.3 NCBI HuRef 2 231,741,321 - 232,092,211 (-) NCBI HuRef CHM1_1 2 239,975,706 - 240,328,679 (-) NCBI CHM1_1 T2T-CHM13v2.0 2 239,684,488 - 239,686,614 (-) NCBI T2T-CHM13v2.0 T2T-CHM13v2.0 2 239,539,541 - 239,892,233 (-) NCBI T2T-CHM13v2.0
Hdac4 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 1 91,856,501 - 92,123,424 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 1 91,856,501 - 92,123,421 (-) Ensembl GRCm39 Ensembl GRCm38 1 91,928,779 - 92,195,702 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 1 91,928,779 - 92,195,699 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 1 93,829,311 - 94,044,970 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 1 93,763,140 - 93,978,799 (-) NCBI MGSCv36 mm8 Celera 1 94,870,648 - 95,086,759 (-) NCBI Celera Cytogenetic Map 1 D NCBI cM Map 1 46.24 NCBI
Hdac4 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 9 99,950,972 - 100,200,994 (-) NCBI GRCr8 mRatBN7.2 9 92,503,467 - 92,750,164 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 9 92,507,611 - 92,750,164 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 9 100,941,905 - 101,184,435 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 9 106,077,667 - 106,320,195 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 9 104,435,308 - 104,677,856 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 9 99,052,945 - 99,299,715 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 9 99,057,089 - 99,299,715 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 9 98,727,262 - 98,973,829 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 9 91,147,435 - 91,389,810 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 9 91,421,635 - 91,447,796 (+) NCBI Celera 9 90,047,090 - 90,289,214 (-) NCBI Celera Cytogenetic Map 9 q36 NCBI
HDAC4 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 13 141,692,632 - 142,055,693 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 2B 141,707,597 - 142,070,660 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 2B 126,287,745 - 126,649,815 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 2B 245,123,061 - 245,428,441 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 2B 245,123,061 - 245,427,054 (-) Ensembl panpan1.1 panPan2
HDAC4 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 25 49,318,621 - 49,545,314 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 25 49,317,349 - 49,453,478 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 25 49,810,705 - 50,083,929 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 25 49,702,537 - 49,976,665 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 25 49,706,181 - 49,977,414 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 25 49,576,470 - 49,848,695 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 25 49,364,978 - 49,638,565 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 25 49,597,454 - 49,869,914 (-) NCBI UU_Cfam_GSD_1.0
Hdac4 Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405303 191,277,349 - 191,488,700 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936745 1,730,694 - 1,942,074 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936745 1,730,743 - 1,942,071 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
HDAC4 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 15 138,381,635 - 138,614,301 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 15 138,378,237 - 138,657,266 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 15 152,920,983 - 153,035,106 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
HDAC4 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 10 125,098,375 - 125,450,524 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 10 125,098,366 - 125,403,227 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666040 73,947,227 - 74,329,237 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Hdac4
.
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSCLAT00000004565 ⟹ ENSCLAP00000004480
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 Ensembl NW_004955542 1,629,691 - 1,886,160 (+) Ensembl
Ensembl Acc Id:
ENSCLAT00000004566 ⟹ ENSCLAP00000004481
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 Ensembl NW_004955542 1,661,241 - 1,886,210 (+) Ensembl
RefSeq Acc Id:
XM_005411176 ⟹ XP_005411233
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955542 1,629,691 - 1,886,160 (+) NCBI
Sequence:
GTGACCCGTGCCCGAGTCCAAGATGGAGGCTGCTGCCCGGCCTGGCCGGCCTCCTGTCCCAGCCTGAGCCCTCTGCGCGACCTCCGAGGGCGAACCAGGCGTGCAGACACGCAGGGCCGATAGCTAGC
hide sequence
RefSeq Acc Id:
XM_005411177 ⟹ XP_005411234
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955542 1,699,580 - 1,886,160 (+) NCBI
Sequence:
CTAGAGTTTTCTCCTTGTTAAAGCGTTGAATGCCCTCGGAGGAGTGACTTTGGAGGGGCTTCTGGGATTAAGTGGAGGTCTTTGCTGAAGATGGTCTTTCTGGTCGAGACCAGCCAGTGGAGTTGCTG
hide sequence
RefSeq Acc Id:
XM_005411178 ⟹ XP_005411235
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955542 1,679,784 - 1,886,160 (+) NCBI
Sequence:
GCTGGCTGGAGGGCTGTGACACAGATGGTCTTTCTGGTCGAGACCAGCCAGTGGAGTTGCTGAA
hide sequence
RefSeq Acc Id:
XM_013508107 ⟹ XP_013363561
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955542 1,629,691 - 1,886,160 (+) NCBI
Sequence:
GTGACCCGTGCCCGAGTCCAAGATGGAGGCTGCTGCCCGGCCTGGCCGGCCTCCTGTCCCAGCC
hide sequence
RefSeq Acc Id:
XM_013508108 ⟹ XP_013363562
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955542 1,629,691 - 1,886,160 (+) NCBI
Sequence:
GTGACCCGTGCCCGAGTCCAAGATGGAGGCTGCTGCCCGGCCTGGCCGGCCTCCTGTCCCAGCC
hide sequence
RefSeq Acc Id:
XM_013508109 ⟹ XP_013363563
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955542 1,629,691 - 1,886,160 (+) NCBI
Sequence:
GTGACCCGTGCCCGAGTCCAAGATGGAGGCTGCTGCCCGGCCTGGCCGGCCTCCTGTCCCAGCC
hide sequence
RefSeq Acc Id:
XM_013508110 ⟹ XP_013363564
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955542 1,749,399 - 1,886,160 (+) NCBI
Sequence:
TGGAGCTGATAAACTGGCAAAAGAACAAGACAAACCGAAGCAGATCTCATGTGGAATGCTGAGA
hide sequence
RefSeq Acc Id:
XM_013508111 ⟹ XP_013363565
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955542 1,629,692 - 1,886,160 (+) NCBI
Sequence:
TGACCCGTGCCCGAGTCCAAGATGGAGGCTGCTGCCCGGCCTGGCCGGCCTCCTGTCCCAGCCT
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RefSeq Acc Id:
XM_013508112 ⟹ XP_013363566
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955542 1,629,691 - 1,886,160 (+) NCBI
Sequence:
GTGACCCGTGCCCGAGTCCAAGATGGAGGCTGCTGCCCGGCCTGGCCGGCCTCCTGTCCCAGCC
hide sequence
RefSeq Acc Id:
XM_013508113 ⟹ XP_013363567
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955542 1,629,691 - 1,886,160 (+) NCBI
Sequence:
GTGACCCGTGCCCGAGTCCAAGATGGAGGCTGCTGCCCGGCCTGGCCGGCCTCCTGTCCCAGCC
hide sequence
RefSeq Acc Id:
XM_013508114 ⟹ XP_013363568
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955542 1,629,691 - 1,886,160 (+) NCBI
Sequence:
GTGACCCGTGCCCGAGTCCAAGATGGAGGCTGCTGCCCGGCCTGGCCGGCCTCCTGTCCCAGCC
hide sequence
RefSeq Acc Id:
XP_005411233 ⟸ XM_005411176
- Peptide Label:
isoform X1
- UniProtKB:
A0A8C2UTB3 (UniProtKB/TrEMBL)
- Sequence:
MSSQSHPDGLSGRDQPVELLNPARVNHMPSTVDVATALPLQVAPTAVPMDLRLDHQFSLPVAEPALREQQLQQELLALKQKQQIQRQILIAEFQRQHEQLSRQHEAQLHEHIKQQQEMLALKHQQELL
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RefSeq Acc Id:
XP_005411235 ⟸ XM_005411178
- Peptide Label:
isoform X4
- Sequence:
MPSTVDVATALPLQVAPTAVPMDLRLDHQFSLPVAEPALREQQLQQELLALKQKQQIQRQILIAEFQRQHEQLSRQHEAQLHEHIKQQQEMLALKHQQELLEHQRKLERHRQEQELEKQHREQKLQQL
hide sequence
RefSeq Acc Id:
XP_005411234 ⟸ XM_005411177
- Peptide Label:
isoform X4
- Sequence:
MPSTVDVATALPLQVAPTAVPMDLRLDHQFSLPVAEPALREQQLQQELLALKQKQQIQRQILIA
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RefSeq Acc Id:
XP_013363561 ⟸ XM_013508107
- Peptide Label:
isoform X1
- UniProtKB:
A0A8C2UTB3 (UniProtKB/TrEMBL)
- Sequence:
MSSQSHPDGLSGRDQPVELLNPARVNHMPSTVDVATALPLQVAPTAVPMDLRLDHQFSLPVAEPALREQQLQQELLALKQKQQIQRQILIAEFQRQHEQLSRQHEAQLHEHIKQQQEMLALKHQQELL
hide sequence
RefSeq Acc Id:
XP_013363563 ⟸ XM_013508109
- Peptide Label:
isoform X3
- Sequence:
MSSQSHPDGLSGRDQPVELLNPARVNHMPSTVDVATALPLQVAPTAVPMDLRLDHQFSLPVAEPALREQQLQQELLALKQKQQIQRQILIAEFQRQHEQLSRQHEAQLHEHIKQQQEMLALKHQQELL
hide sequence
RefSeq Acc Id:
XP_013363568 ⟸ XM_013508114
- Peptide Label:
isoform X8
- Sequence:
MSSQSHPDGLSGRDQPVELLNPARVNHMPSTVDVATALPLQVAPTAVPMDLRLDHQFSLPVAEPALREQQLQQELLALKQKQQIQRQILIAEFQRQHEQLSRQHEAQLHEHIKQQQEMLALKHQQELL
hide sequence
RefSeq Acc Id:
XP_013363567 ⟸ XM_013508113
- Peptide Label:
isoform X7
- UniProtKB:
A0A8C2UWW9 (UniProtKB/TrEMBL)
- Sequence:
MSSQSHPDGLSGRDQPVELLNPARVNHMPSTVDVATALPLQVAPTAVPMDLRLDHQFSLPVAEP
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RefSeq Acc Id:
XP_013363562 ⟸ XM_013508108
- Peptide Label:
isoform X2
- Sequence:
MSSQSHPDGLSGRDQPVELLNPARVNHMPSTVDVATALPLQVAPTAVPMDLRLDHQFSLPVAEPALREQQLQQELLALKQKQQIQRQILIAEFQRQHEQLSRQHEAQLHEHIKQQEMLALKHQQELLE
hide sequence
RefSeq Acc Id:
XP_013363566 ⟸ XM_013508112
- Peptide Label:
isoform X6
- Sequence:
MSSQSHPDGLSGRDQPVELLNPARVNHMPSTVDVATALPLQVAPTAVPMDLRLDHQFSLPVAEPALREQQLQQELLALKQKQQIQRQILIAEFQRQHEQLSRQHEAQLHEHIKQQEMLALKHQQELLE
hide sequence
RefSeq Acc Id:
XP_013363565 ⟸ XM_013508111
- Peptide Label:
isoform X5
- Sequence:
MSSQSHPDGLSGRDQPVELLNPARVNHMPSTVDVATALPLQVAPTAVPMDLRLDHQFSLPVAEP
hide sequence
RefSeq Acc Id:
XP_013363564 ⟸ XM_013508110
- Peptide Label:
isoform X4
- Sequence:
MPSTVDVATALPLQVAPTAVPMDLRLDHQFSLPVAEPALREQQLQQELLALKQKQQIQRQILIAEFQRQHEQLSRQHEAQLHEHIKQQQEMLALKHQQELLEHQRKLERHRQEQELEKQHREQKLQQL
hide sequence
Ensembl Acc Id:
ENSCLAP00000004480 ⟸ ENSCLAT00000004565
Ensembl Acc Id:
ENSCLAP00000004481 ⟸ ENSCLAT00000004566
